##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140318_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6902030 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.83829279212058 33.0 31.0 34.0 30.0 34.0 2 31.961398603019692 34.0 31.0 34.0 30.0 34.0 3 32.013897650401404 34.0 31.0 34.0 30.0 34.0 4 35.525668245429245 37.0 35.0 37.0 33.0 37.0 5 35.583084686679136 37.0 35.0 37.0 33.0 37.0 6 35.634766438279755 37.0 35.0 37.0 33.0 37.0 7 35.53253115387792 37.0 35.0 37.0 33.0 37.0 8 35.501019844886216 37.0 35.0 37.0 33.0 37.0 9 37.12313333903214 39.0 37.0 39.0 33.0 39.0 10-11 37.10108236272517 39.0 37.0 39.0 33.0 39.0 12-13 37.05284937909572 39.0 37.0 39.0 33.0 39.0 14-15 38.41975440558792 40.0 38.0 41.0 33.0 41.0 16-17 38.43265046660186 40.0 38.0 41.0 33.0 41.0 18-19 38.449319258247215 40.0 38.0 41.0 33.0 41.0 20-21 38.500460893855276 40.0 38.0 41.0 33.0 41.0 22-23 38.48247316660654 40.0 38.0 41.0 33.0 41.0 24-25 38.491040353055595 40.0 38.0 41.0 33.0 41.0 26-27 38.469112263766135 40.0 38.0 41.0 33.0 41.0 28-29 38.444355403623966 40.0 38.0 41.0 33.0 41.0 30-31 38.394525765530176 40.0 38.0 41.0 33.0 41.0 32-33 38.353240741759706 40.0 38.0 41.0 33.0 41.0 34-35 38.29955236600985 40.0 38.0 41.0 33.0 41.0 36-37 38.24287762701533 40.0 38.0 41.0 33.0 41.0 38-39 38.16611650042958 40.0 38.0 41.0 33.0 41.0 40-41 38.10167061683101 40.0 38.0 41.0 33.0 41.0 42-43 38.01958768081474 40.0 38.0 41.0 32.5 41.0 44-45 37.91039521057476 40.0 37.0 41.0 32.0 41.0 46-47 37.81261717513132 40.0 37.0 41.0 32.0 41.0 48-49 37.71774787507016 40.0 37.0 41.0 32.0 41.0 50-51 37.58528126463375 40.0 37.0 41.0 31.0 41.0 52-53 37.46884966485088 40.0 36.0 41.0 31.0 41.0 54-55 37.33187819216488 39.5 36.0 41.0 31.0 41.0 56-57 37.16031557571078 39.0 36.0 41.0 31.0 41.0 58-59 37.304775413164705 39.0 36.0 41.0 31.0 41.0 60-61 37.36320835836074 39.0 36.0 41.0 31.0 41.0 62-63 37.206897177861904 39.0 35.0 41.0 31.0 41.0 64-65 37.00368298858024 39.0 35.0 41.0 31.0 41.0 66-67 36.73773565194914 38.0 35.0 40.0 31.0 41.0 68-69 36.46846060790178 37.5 35.0 40.0 31.0 41.0 70-71 36.23815666523451 37.0 35.0 40.0 31.0 41.0 72-73 36.004440107940226 37.0 35.0 39.0 31.0 41.0 74-75 35.738705359946465 36.0 35.0 39.0 31.0 41.0 76-77 35.490463713054965 36.0 34.0 39.0 31.0 40.5 78-79 35.18719811108276 35.5 34.0 37.5 30.5 39.5 80-81 34.89370542477903 35.0 34.0 37.0 30.0 39.0 82-83 34.620795296825364 35.0 34.0 37.0 30.0 39.0 84-85 34.39066612756221 35.0 34.0 36.0 30.0 38.0 86-87 34.19463776680071 35.0 34.0 36.0 30.0 37.0 88-89 34.04159825476253 35.0 34.0 36.0 30.0 37.0 90-91 33.92034056692795 35.0 34.0 35.0 30.0 36.5 92-93 33.82547287599271 35.0 34.0 35.0 30.0 36.0 94-95 33.79135175035868 35.0 34.0 35.0 30.0 36.0 96-97 33.78555694463227 35.0 34.0 35.0 30.0 36.0 98-99 33.8129392782917 35.0 34.0 35.0 30.0 36.0 100 33.48277861306972 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 33.0 17 284.0 18 930.0 19 2825.0 20 7083.0 21 14725.0 22 24227.0 23 34215.0 24 44707.0 25 55204.0 26 64030.0 27 69699.0 28 79827.0 29 98060.0 30 115915.0 31 134855.0 32 169479.0 33 220116.0 34 298382.0 35 418128.0 36 641691.0 37 1182652.0 38 1857385.0 39 1290939.0 40 76637.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.81255804451734 20.758037852631762 14.402733688494546 24.026670414356353 2 13.8877547620048 21.059891075524156 42.46552101338302 22.586833149088022 3 17.79741612250309 26.37828291096967 30.40870584451241 25.415595122014828 4 12.10235249629457 18.203658923534093 40.05462161132304 29.639366968848297 5 13.146646680221169 38.163268647355096 35.9012757296388 12.788808942784936 6 29.206928975967937 38.308120944128035 19.66018693051175 12.824763149392279 7 26.240004752225072 32.6818921389794 23.764544633970004 17.313558474825523 8 23.792362536818878 37.25402526503072 21.74867394085508 17.204938257295318 9 25.006758881082813 17.76972861607382 21.889849797813106 35.333662705030264 10-11 23.639856679846364 27.242419983685963 29.509854347199305 19.607868989268372 12-13 24.345657283159724 24.755247430046403 29.376683338352393 21.522411948441484 14-15 21.654729595417464 26.334252773242877 26.71279368904328 25.29822394229638 16-17 21.537224888590618 29.390669864570125 27.38093996223136 21.6911652846079 18-19 21.578330572162542 29.094677188600027 28.384690820228187 20.942301419009244 20-21 22.5242564064802 28.16419705699371 28.087770677666075 21.22377585886001 22-23 22.22970404821419 28.103790791030136 27.870481107035634 21.796024053720043 24-25 21.985450168962313 28.201858367749434 27.986965183690092 21.82572627959816 26-27 21.919212014151984 28.375170677027533 27.829200296369187 21.876417012451295 28-29 21.87088210815121 28.444646298858256 27.86712889582291 21.817342697167625 30-31 22.15798053966267 28.19959210517594 27.836865962212006 21.80556139294939 32-33 21.92488761356386 28.322148601717483 27.85480824682709 21.89815553789157 34-35 22.088155280416572 28.29865271610067 27.88295112243385 21.730240881048907 36-37 22.005731531521327 28.18751991851731 27.906069843837354 21.90067870612401 38-39 21.878296576188966 28.287071912632577 28.00866209903996 21.825969412138495 40-41 22.114105757940248 28.11423191505381 27.943301686565704 21.828360640440238 42-43 21.92454634788403 28.192077606386846 27.903707096154236 21.979668949574886 44-45 21.953114836508675 28.2249188581773 27.907781120825152 21.914185184488876 46-47 21.933969463295508 28.161253639803114 27.821306514715676 22.083470382185702 48-49 21.849734090630484 28.196233845496305 27.909787244103057 22.04424481977015 50-51 21.86140128666558 28.26464722749779 27.84321339100771 22.030738094828923 52-53 21.984116601888186 28.177202574987504 27.782014301115183 22.056666522009124 54-55 21.99091014559918 28.07899062065678 27.88261362278647 22.04748561095757 56-57 21.96827874787616 28.135696387996784 27.877813589097155 22.018211275029902 58-59 21.9596920706287 28.20644392336028 27.878116006845687 21.955747999165332 60-61 22.015448483475218 28.169925225779302 27.875764736348042 21.938861554397437 62-63 21.978808758244988 28.24341967204571 27.79518079079847 21.982590778910833 64-65 21.930810495472027 28.222960722734207 27.815479155040286 22.03074962675348 66-67 21.98205574676454 28.23187933743194 27.761937364549894 22.024127551253624 68-69 21.951497963412518 28.171067459567965 27.8304569838987 22.046977593120822 70-71 21.96460076610447 27.98257426510371 27.9071355330118 22.145689435780017 72-73 21.969510275403923 28.026528524763254 27.890876763893928 22.113084435938895 74-75 21.836978796122953 28.170140852701238 27.916533752084447 22.07634659909136 76-77 22.020689262380415 28.085309047579056 27.812522570220093 22.081479119820433 78-79 21.934871034986124 28.097079117096595 27.817195784851933 22.15085406306534 80-81 21.9233819898078 28.16569514734765 27.855707428338295 22.055215434506263 82-83 21.95200223815759 28.121287431119203 27.961482615901183 21.965227714822024 84-85 22.05302183681709 28.12960158522587 27.859334170225296 21.958042407731742 86-87 21.86890923336064 28.22202019811577 27.902048207279705 22.00702236124388 88-89 21.974250444599107 28.11731191019676 27.89740803256654 22.01102961263759 90-91 21.932729262752602 28.26542929782011 27.865130047479745 21.936711391947544 92-93 21.967820808113718 28.268104115023938 27.89262130208772 21.871453774774626 94-95 21.8082653408429 28.30567243470022 27.963844412111154 21.922217812345725 96-97 21.85096183393154 28.445299545622294 27.978120637685716 21.725617982760447 98-99 22.926144788720265 30.41407264245165 28.154849356081872 18.504933212746213 100 21.88587581663927 31.33377971254116 22.04153412658229 24.738810344237276 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1789.0 1 1374.0 2 1054.0 3 1140.5 4 1124.5 5 1210.5 6 1429.0 7 1704.0 8 1973.5 9 2241.0 10 2546.0 11 2814.5 12 3094.5 13 3520.5 14 4125.5 15 4942.0 16 5998.0 17 7388.5 18 9079.5 19 11294.5 20 14242.5 21 17984.5 22 22995.5 23 30005.5 24 39396.0 25 51173.0 26 65889.0 27 82718.0 28 100512.5 29 119834.0 30 137926.0 31 155127.5 32 172870.0 33 188485.5 34 204495.0 35 218840.0 36 233108.0 37 247754.5 38 257084.5 39 262962.5 40 269995.0 41 277325.0 42 281473.0 43 285762.0 44 289743.5 45 292221.5 46 292715.0 47 291841.5 48 289394.5 49 282456.5 50 273656.5 51 264860.5 52 253451.0 53 238808.0 54 223927.5 55 207959.5 56 190835.5 57 172704.0 58 154214.5 59 134986.5 60 112905.5 61 91746.5 62 73331.0 63 57289.5 64 43809.0 65 33342.0 66 25266.5 67 19290.5 68 15112.0 69 11625.0 70 8966.0 71 6837.5 72 5163.0 73 3934.5 74 3009.5 75 2292.5 76 1701.5 77 1269.0 78 984.0 79 778.5 80 594.0 81 429.5 82 334.0 83 241.5 84 170.0 85 134.5 86 115.0 87 88.5 88 51.5 89 27.5 90 18.0 91 14.5 92 14.0 93 10.0 94 7.5 95 7.0 96 4.0 97 3.5 98 2.0 99 2.5 100 16.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 2.752813302752958E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 1.2315217407052708E-4 14-15 2.8976982134241662E-5 16-17 1.1590792853696665E-4 18-19 9.634846559635354E-4 20-21 5.073323292018604E-4 22-23 0.0 24-25 1.0160080781350853E-4 26-27 1.6705420821897988E-4 28-29 0.0 30-31 0.0 32-33 5.8414772044384125E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 5.418774924913197E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 1.9101460358739316E-4 76-77 3.5103124643209646E-5 78-79 5.058748488698889E-4 80-81 3.5914567145964525E-5 82-83 2.7250287899291658E-5 84-85 4.960696128975895E-4 86-87 1.4866837734412865E-4 88-89 2.8212087186634242E-5 90-91 9.526623960716775E-6 92-93 6.276999547862894E-4 94-95 3.6249902517154043E-4 96-97 2.8979998005376686E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2158.0 20-21 4193.0 22-23 4758.0 24-25 5297.0 26-27 7115.0 28-29 10220.0 30-31 16278.0 32-33 19334.0 34-35 25936.0 36-37 38036.0 38-39 43971.0 40-41 43348.0 42-43 46349.0 44-45 52680.0 46-47 54748.0 48-49 55178.0 50-51 53564.0 52-53 52498.0 54-55 56286.0 56-57 58275.0 58-59 58426.0 60-61 58278.0 62-63 56058.0 64-65 58418.0 66-67 61721.0 68-69 63043.0 70-71 61870.0 72-73 60231.0 74-75 60810.0 76-77 62794.0 78-79 64884.0 80-81 65068.0 82-83 62014.0 84-85 61593.0 86-87 63124.0 88-89 67499.0 90-91 70423.0 92-93 72389.0 94-95 85249.0 96-97 220183.0 98-99 407432.0 100-101 4410301.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.56442837285073 #Duplication Level Percentage of deduplicated Percentage of total 1 89.7848895704864 76.82392752618196 2 7.18161796176097 12.289820713805494 3 1.7525202705935055 4.49860185495501 4 0.613924186670653 2.1012028838696692 5 0.26834632275576364 1.148044985627671 6 0.14229952392208176 0.7305466453273035 7 0.07867678847410345 0.47123541023988474 8 0.04906972123337528 0.33588981181991134 9 0.03127869093873591 0.24087089793816036 >10 0.09591468203782852 1.2253215806648072 >50 0.0011052190384455293 0.06466108038197103 >100 3.049100774008357E-4 0.0390863656187105 >500 5.2152010704930186E-5 0.03079024356937768 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4488491067120833E-5 2 0.0 0.0 0.0 0.0 1.4488491067120833E-5 3 0.0 0.0 0.0 0.0 1.4488491067120833E-5 4 0.0 4.34654732013625E-5 0.0 1.4488491067120833E-5 2.8976982134241666E-5 5 2.8976982134241666E-5 4.34654732013625E-5 0.0 1.4488491067120833E-5 2.8976982134241666E-5 6 2.8976982134241666E-5 4.34654732013625E-5 0.0 1.4488491067120833E-5 5.795396426848333E-5 7 2.8976982134241666E-5 5.795396426848333E-5 0.0 5.795396426848333E-5 5.795396426848333E-5 8 2.8976982134241666E-5 7.244245533560416E-5 0.0 7.244245533560416E-5 5.795396426848333E-5 9 2.8976982134241666E-5 1.4488491067120833E-4 0.0 1.8835038387257083E-4 7.244245533560416E-5 10-11 7.244245533560416E-5 1.4488491067120833E-4 0.0 2.0283887493969166E-4 7.244245533560416E-5 12-13 7.244245533560416E-5 1.4488491067120833E-4 0.0 2.4630434814105416E-4 7.244245533560416E-5 14-15 7.244245533560416E-5 2.8976982134241666E-4 0.0 3.042583124095375E-4 1.2315217407052708E-4 16-17 7.244245533560416E-5 3.042583124095375E-4 0.0 3.1150255794309793E-4 1.303964196040875E-4 18-19 7.244245533560416E-5 3.259910490102187E-4 0.0 3.549680311444604E-4 1.5937340173832916E-4 20-21 7.244245533560416E-5 3.549680311444604E-4 0.0 3.9843350434582293E-4 1.5937340173832916E-4 22-23 8.6930946402725E-5 4.7812020521498743E-4 0.0 4.7087595968142704E-4 1.811061383390104E-4 24-25 1.2315217407052708E-4 5.722953971512728E-4 0.0 6.954475712218E-4 2.0283887493969166E-4 26-27 1.303964196040875E-4 6.08516624819075E-4 0.0 0.0013908951424436 2.173273660068125E-4 28-29 1.303964196040875E-4 6.302493614197561E-4 0.0 0.00487537724408616 2.245716115403729E-4 30-31 1.303964196040875E-4 6.954475712218E-4 0.0 0.016951534548531374 2.3181585707393332E-4 32-33 1.303964196040875E-4 7.026918167553604E-4 0.0 0.04773957806616314 2.4630434814105416E-4 34-35 1.6661764727188958E-4 8.041112542252061E-4 0.0 0.08161367018109165 2.680370847417354E-4 36-37 2.0283887493969166E-4 9.05530691695052E-4 0.0 0.12090645795512334 2.752813302752958E-4 38-39 2.0283887493969166E-4 9.272634282957333E-4 0.0 0.15898945672505044 3.042583124095375E-4 40-41 2.173273660068125E-4 9.707289014970957E-4 0.0 0.19220432249642497 3.187468034766583E-4 42-43 2.173273660068125E-4 9.997058836313374E-4 0.0 0.22110161792979746 3.187468034766583E-4 44-45 2.3181585707393332E-4 0.001130102303235425 0.0 0.24363122153917036 3.259910490102187E-4 46-47 2.535485936746146E-4 0.0012315217407052707 0.0 0.2608870144001113 3.549680311444604E-4 48-49 2.60792839208175E-4 0.0012315217407052707 0.0 0.27366586352131184 3.622122766780208E-4 50-51 2.60792839208175E-4 0.0013908951424436 0.0 0.2832137791345445 3.7670076774514165E-4 52-53 2.60792839208175E-4 0.0014053836335107207 0.0 0.2904362919315042 4.274104864800646E-4 54-55 2.60792839208175E-4 0.001412627879044281 0.0 0.2964779927064936 4.926086962821083E-4 56-57 2.60792839208175E-4 0.0014343606156449625 0.0 0.3022806333788755 5.2158567841635E-4 58-59 2.60792839208175E-4 0.001441604861178523 0.0 0.3086700579394758 5.2158567841635E-4 60-61 2.60792839208175E-4 0.001463337597779204 0.0 0.31377725104063586 5.2158567841635E-4 62-63 2.60792839208175E-4 0.0014923145799134456 0.0 0.31842805667318164 5.2158567841635E-4 64-65 2.60792839208175E-4 0.0017675959101887415 0.0 0.32170245565435096 5.2158567841635E-4 66-67 2.60792839208175E-4 0.0018183056289236645 0.0 0.3247305502873792 5.2158567841635E-4 68-69 2.60792839208175E-4 0.001847282611057906 0.0 0.32788904134001157 5.2158567841635E-4 70-71 2.60792839208175E-4 0.0018545268565914666 0.0 0.33043177152229125 5.505626605505916E-4 72-73 2.60792839208175E-4 0.0018545268565914666 0.0 0.33292379198583605 6.230051158861958E-4 74-75 2.60792839208175E-4 0.0018835038387257082 0.0 0.33507533290930347 6.230051158861958E-4 76-77 2.60792839208175E-4 0.0019342135574606312 0.0 0.33725585081490517 6.230051158861958E-4 78-79 2.60792839208175E-4 0.0019631905395948728 0.0 0.3389582485152919 6.230051158861958E-4 80-81 2.60792839208175E-4 0.0019704347851284333 0.0 0.3398203137337856 6.230051158861958E-4 82-83 2.60792839208175E-4 0.0019849232761955543 0.0 0.34029843393900056 6.664705890875583E-4 84-85 2.60792839208175E-4 0.001999411767262675 0.0 0.3405085170594738 6.664705890875583E-4 86-87 2.60792839208175E-4 0.002013900258329796 0.0 0.3405592267782087 6.737148346211187E-4 88 2.60792839208175E-4 0.0021877621511352456 0.0 0.34056647102374227 6.809590801546791E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5610 0.0 35.267063 1 GTATCAA 9035 0.0 31.256086 1 TCAACGC 9060 0.0 28.97675 4 ATCAACG 9215 0.0 28.535227 3 CAACGCA 9260 0.0 28.350903 5 AACGCAG 9825 0.0 26.677324 6 TATCAAC 10720 0.0 25.396704 2 ACGCAGA 11820 0.0 22.210443 7 CGCAGAG 12085 0.0 21.618471 8 GTACATG 20050 0.0 19.651142 1 TACATGG 19745 0.0 19.376608 2 ACATGGG 20210 0.0 18.32416 3 TATACCG 600 0.0 16.910105 5 GCAGAGT 15810 0.0 16.498194 9 CATGGGG 15175 0.0 16.157925 4 GGACCGA 1115 0.0 15.924198 6 ACCGAAC 960 0.0 15.853108 8 AGGACCG 1400 0.0 15.098306 5 AGAGTAC 13240 0.0 14.687726 10-11 CAGAGTA 15340 0.0 14.578573 10-11 >>END_MODULE