##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140315_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4560214 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.983358894999228 31.0 31.0 34.0 30.0 34.0 2 32.08890481894051 33.0 31.0 34.0 30.0 34.0 3 31.824990011433673 31.0 31.0 34.0 30.0 34.0 4 35.89081301886271 37.0 35.0 37.0 35.0 37.0 5 35.82846002402519 37.0 35.0 37.0 35.0 37.0 6 35.86815596811904 37.0 35.0 37.0 35.0 37.0 7 35.8522183388762 37.0 35.0 37.0 35.0 37.0 8 35.848172037540344 37.0 35.0 37.0 35.0 37.0 9 37.6240266355921 39.0 37.0 39.0 35.0 39.0 10-11 37.528251744326035 39.0 37.0 39.0 35.0 39.0 12-13 37.48204349620434 39.0 37.0 39.0 34.5 39.0 14-15 38.73724347146866 40.0 38.0 41.0 34.0 41.0 16-17 38.67266580033305 40.0 38.0 41.0 34.0 41.0 18-19 38.66781230003679 40.0 38.0 41.0 34.0 41.0 20-21 38.731842175548834 40.0 38.0 41.0 34.0 41.0 22-23 38.69079539062513 40.0 38.0 41.0 34.0 41.0 24-25 38.596872183117455 40.0 38.0 41.0 34.0 41.0 26-27 38.45123601155608 40.0 38.0 41.0 34.0 41.0 28-29 38.323837988436225 40.0 38.0 41.0 34.0 41.0 30-31 38.20418279840065 40.0 38.0 41.0 34.0 41.0 32-33 38.01986157953333 40.0 37.0 41.0 33.0 41.0 34-35 38.10668528449082 40.0 38.0 41.0 33.0 41.0 36-37 38.070138287149035 40.0 37.5 41.0 33.0 41.0 38-39 38.033007399023035 40.0 37.0 41.0 33.0 41.0 40-41 37.96999488672924 40.0 37.0 41.0 33.0 41.0 42-43 38.00066966495502 40.0 37.0 41.0 33.0 41.0 44-45 38.03103595299531 40.0 37.0 41.0 33.0 41.0 46-47 37.97943201593217 40.0 37.0 41.0 33.0 41.0 48-49 37.88596593639123 40.0 37.0 41.0 33.0 41.0 50-51 37.78415630196515 40.0 37.0 41.0 33.0 41.0 52-53 37.50987506899972 40.0 36.0 41.0 32.0 41.0 54-55 37.4467677463045 39.0 36.0 41.0 32.0 41.0 56-57 37.27288339231133 39.0 35.5 41.0 31.5 41.0 58-59 37.09614007206983 39.0 35.0 41.0 31.0 41.0 60-61 36.94066165725953 39.0 35.0 40.0 31.0 41.0 62-63 36.68633365579691 38.0 35.0 40.0 31.0 41.0 64-65 36.31924892100698 38.0 35.0 40.0 30.5 41.0 66-67 36.06526323148401 37.0 34.5 40.0 30.0 41.0 68-69 35.7749946118569 37.0 34.0 39.5 30.0 41.0 70-71 35.49851478343289 36.0 34.0 39.0 30.0 41.0 72-73 35.20763372205775 36.0 34.0 39.0 30.0 40.0 74-75 34.884623615858445 35.0 34.0 38.5 29.0 40.0 76-77 33.64537406473485 34.5 32.0 36.5 28.0 39.0 78-79 34.26622759250452 35.0 33.5 37.0 29.0 39.0 80-81 34.20195501537326 35.0 34.0 36.5 29.0 39.0 82-83 33.93543058529781 35.0 33.5 36.0 29.0 37.5 84-85 33.70952913438835 35.0 33.0 36.0 29.0 37.0 86-87 33.51764432143218 35.0 33.0 35.0 29.0 37.0 88-89 33.35638667325472 35.0 33.0 35.0 29.0 36.0 90-91 33.23049984444232 35.0 33.0 35.0 29.0 36.0 92-93 33.206775662580455 35.0 33.0 35.0 29.0 36.0 94-95 33.20358588544318 35.0 33.0 35.0 29.0 35.5 96-97 33.19597833640947 35.0 33.0 35.0 29.0 35.0 98-99 33.30425378550855 35.0 33.0 35.0 29.5 35.0 100 32.186293116068335 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 8.0 20 31.0 21 176.0 22 739.0 23 2519.0 24 6436.0 25 13661.0 26 24465.0 27 39267.0 28 56428.0 29 75042.0 30 95476.0 31 119250.0 32 147360.0 33 187246.0 34 250222.0 35 344657.0 36 533397.0 37 904054.0 38 1121219.0 39 615634.0 40 22926.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.8854685328364 20.27130744302789 13.410445211562442 24.432778812573268 2 15.207395707826207 21.25160696639395 40.19159469401737 23.349402631762473 3 18.318061356177886 25.825733893701774 30.45664618829213 25.399558561828208 4 12.86753056171452 17.68508347990954 38.27407531995862 31.173310638417313 5 13.32643599620544 37.84728085129338 35.60074154414683 13.225541608354344 6 30.68057770973029 37.58795091633858 18.419025949220806 13.312445424710331 7 27.102850874980867 32.24054836023046 22.914165870285913 17.74243489450276 8 24.971722818271246 36.44076791133048 20.980967121279832 17.60654214911844 9 25.721336761827406 16.322435745340023 21.029320115240203 36.926907377592364 10-11 24.566972076310453 26.456587344365857 28.77802445236123 20.198416126962464 12-13 25.11968736554907 23.889920516888022 28.940900580542934 22.049491537019975 14-15 22.241738886547985 25.449828960558907 26.171167066922752 26.137265085970355 16-17 22.136264782101232 28.60042947654189 26.921951382641453 22.341354358715428 18-19 22.09082396593087 27.981586091655082 28.378437942694738 21.549151999719307 20-21 22.79226217483571 27.123232006028015 28.17040460820418 21.914101210932095 22-23 22.62639056349589 27.141606230031513 27.93915597614007 22.29284723033253 24-25 22.461301549034857 27.213470230737425 28.07754277861075 22.247685441616973 26-27 22.400387377999355 27.408650322776595 27.946836253902006 22.24412604532204 28-29 22.302175101454438 27.47408373634343 28.005356434145266 22.21838472805686 30-31 22.51556909155726 27.251301642071535 27.89253915929106 22.340590107080143 32-33 22.35800522848109 27.38157534488545 27.962537314751028 22.29788211188243 34-35 22.480863758029592 27.459319372848206 27.919314367503002 22.140502501619196 36-37 22.464317543484377 27.374940818891357 27.810585191952104 22.350156445672162 38-39 22.334862842387384 27.450347249782848 27.932550733595775 22.282239174233993 40-41 22.55688625341438 27.288905290496036 27.844824273529696 22.309384182559892 42-43 22.46948961619727 27.406766952953383 27.700464530232594 22.423278900616758 44-45 22.474297341443854 27.525156868259927 27.572059996056375 22.428485794239844 46-47 22.5855511072703 27.415389499303362 27.352145464806615 22.646913928619718 48-49 22.56486820673457 27.48063726225386 27.347132334141318 22.607362196870252 50-51 22.469060915435215 27.564579386658068 27.373393145806507 22.592966552100208 52-53 22.598909388499067 27.4742378206854 27.3179510797307 22.608901711084833 54-55 22.543735269966984 27.456689257690627 27.2986173072666 22.700958165075797 56-57 22.63404240216239 27.560073050922075 27.22357305683738 22.582311490078162 58-59 22.555978968256323 27.658235804323233 27.295888228797693 22.489896998622758 60-61 22.67325703934107 27.683075457324858 27.202825641643567 22.4408418616905 62-63 22.63236945323988 27.785325130072835 27.0584446774195 22.523860739267786 64-65 22.597715753136644 27.67050792533448 27.10158467451712 22.630191647011756 66-67 22.646419461576002 27.659827975538377 27.016903183292808 22.676849379592817 68-69 22.581973808897537 27.61387777539253 27.134250289700212 22.66989812600972 70-71 22.530865290023318 27.424344200228006 27.220431660709576 22.8243588490391 72-73 22.622603199453 27.45470149190952 27.178608383163176 22.744086925474306 74-75 22.529173549575727 27.54064355182267 27.185420507864077 22.744762390737527 76-77 22.63642756989149 27.50516699557086 27.054387394299233 22.804018040238407 78-79 22.53422186482636 27.473636000724987 27.113163588142307 22.878978546306346 80-81 22.565692892916307 27.541060194370765 27.14374875185649 22.749498160856447 82-83 22.60615157485398 27.470948568575455 27.28228154455246 22.640618312018105 84-85 22.69653152158867 27.49212287639407 27.13515131335276 22.6761942886645 86-87 22.538793960400536 27.53478504738476 27.238373051113147 22.68804794110156 88-89 22.598305764720404 27.440717195407977 27.19647265769658 22.76450438217504 90-91 22.62492693459304 27.560726692370626 27.169438286336028 22.64490808670031 92-93 22.66837816970416 27.463133681068975 27.235245879364612 22.63324226986225 94-95 22.445763791782053 27.535010686648153 27.2969112518589 22.722314269710893 96-97 22.4606499858671 27.695802838706385 27.37092243093982 22.472624744486698 98-99 23.625023398461742 29.64348582214587 27.50727772844506 19.224213050947327 100 30.409341327707924 41.14324260848593 28.44741606380615 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 742.0 1 680.0 2 895.5 3 1246.5 4 1634.5 5 2647.0 6 3596.0 7 4209.0 8 4467.0 9 4258.0 10 3849.0 11 3484.5 12 3801.5 13 5010.5 14 7729.5 15 11536.5 16 14834.0 17 17115.5 18 18240.0 19 18264.0 20 17688.0 21 17179.5 22 17327.0 23 18949.0 24 22568.0 25 28125.5 26 35871.0 27 45183.0 28 55493.0 29 67162.0 30 78210.0 31 88625.0 32 99588.0 33 110117.5 34 120150.5 35 130663.5 36 141199.5 37 151162.5 38 159872.5 39 165437.5 40 170933.0 41 178153.5 42 183932.5 43 188395.0 44 193214.5 45 198227.5 46 202335.0 47 205380.0 48 207223.0 49 205722.5 50 202504.0 51 198016.0 52 190662.5 53 181600.5 54 171444.5 55 160303.5 56 148332.5 57 134963.0 58 120278.0 59 103992.5 60 86875.0 61 71115.0 62 57285.5 63 44929.5 64 34256.0 65 26148.0 66 19718.5 67 14991.5 68 11458.0 69 8528.5 70 6390.5 71 4636.5 72 3345.0 73 2385.0 74 1637.5 75 1121.5 76 776.5 77 521.5 78 341.5 79 240.0 80 167.0 81 113.5 82 81.5 83 61.0 84 42.5 85 28.5 86 18.0 87 12.0 88 6.5 89 4.0 90 3.5 91 2.5 92 2.5 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00833294226981453 3 0.002609526658178761 4 3.289319317032051E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.8639476129848293E-4 16-17 2.52181147639124E-4 18-19 0.0016227308630691454 20-21 7.675363694367456E-5 22-23 0.0016997086370420247 24-25 2.8517164481301296E-4 26-27 0.0027211400874736814 28-29 0.005830942848085051 30-31 0.003025703627378547 32-33 0.0022741609174185932 34-35 0.0023617929756506906 36-37 0.0028564564787055074 38-39 0.0 40-41 7.276075921304691E-4 42-43 0.00662569986107848 44-45 0.004064230636495676 46-47 6.231479718943804E-4 48-49 0.01624506266131258 50-51 0.01141280126243881 52-53 0.015710184933579747 54-55 0.013164776618963012 56-57 0.01136854918883596 58-59 0.0173338977670662 60-61 0.009227848600487634 62-63 0.02054226674740596 64-65 0.015221983997300846 66-67 0.03218226636555689 68-69 0.022362299607269667 70-71 0.02243106462896052 72-73 0.02007546776460356 74-75 0.01005365720631487 76-77 0.01281593000295502 78-79 0.013448333309915838 80-81 0.010514935134630437 82-83 0.004308156535392317 84-85 0.0031275561037175416 86-87 0.014077435920331735 88-89 0.001249830077114516 90-91 2.1974510196015771E-4 92-93 0.0012148753170265097 94-95 0.0030355165225122716 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 100.0 20-21 356.0 22-23 769.0 24-25 1547.0 26-27 2815.0 28-29 6790.0 30-31 14515.0 32-33 18486.0 34-35 24977.0 36-37 37855.0 38-39 43656.0 40-41 43044.0 42-43 46386.0 44-45 52967.0 46-47 52228.0 48-49 49008.0 50-51 45071.0 52-53 44106.0 54-55 47665.0 56-57 49426.0 58-59 48796.0 60-61 48022.0 62-63 46327.0 64-65 48546.0 66-67 51190.0 68-69 50026.0 70-71 47667.0 72-73 45858.0 74-75 46046.0 76-77 46234.0 78-79 49350.0 80-81 49489.0 82-83 47696.0 84-85 48196.0 86-87 51035.0 88-89 54249.0 90-91 56872.0 92-93 61809.0 94-95 75459.0 96-97 167820.0 98-99 938758.0 100-101 1899002.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.62847047722617 #Duplication Level Percentage of deduplicated Percentage of total 1 91.72998762969719 81.2988850051494 2 6.12160075970538 10.850962244098273 3 1.2814559863795898 3.4072045217012468 4 0.4458100874367981 1.5804586469136752 5 0.16941605403718213 0.7507542871801275 6 0.08912071868745568 0.47391797910602074 7 0.04860781836594992 0.30156256165062756 8 0.03071011520523063 0.2177432431055198 9 0.018568701216548265 0.14811440288141534 >10 0.06352184986364592 0.8472407465456139 >50 7.080873801582099E-4 0.045390610519657905 >100 4.92192024847841E-4 0.07776575114842363 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.1928795446880345E-5 0.0 3 0.0 0.0 0.0 2.1928795446880345E-5 0.0 4 0.0 0.0 0.0 2.1928795446880345E-5 0.0 5 0.0 2.1928795446880345E-5 0.0 2.1928795446880345E-5 0.0 6 2.1928795446880345E-5 2.1928795446880345E-5 0.0 2.1928795446880345E-5 0.0 7 2.1928795446880345E-5 2.1928795446880345E-5 0.0 2.1928795446880345E-5 0.0 8 2.1928795446880345E-5 2.1928795446880345E-5 0.0 2.1928795446880345E-5 0.0 9 2.1928795446880345E-5 8.771518178752138E-5 0.0 6.578638634064103E-5 0.0 10-11 2.1928795446880345E-5 9.867957951096155E-5 0.0 8.771518178752138E-5 0.0 12-13 2.1928795446880345E-5 1.0964397723440172E-4 0.0 8.771518178752138E-5 0.0 14-15 2.1928795446880345E-5 1.5350156812816241E-4 0.0 9.867957951096155E-5 1.0964397723440172E-5 16-17 4.385759089376069E-5 1.5350156812816241E-4 0.0 1.0964397723440172E-4 2.1928795446880345E-5 18-19 6.578638634064103E-5 1.7543036357504276E-4 0.0 1.0964397723440172E-4 2.1928795446880345E-5 20-21 6.578638634064103E-5 1.7543036357504276E-4 0.0 1.0964397723440172E-4 2.1928795446880345E-5 22-23 8.771518178752138E-5 2.1928795446880345E-4 0.0 1.3157277268128207E-4 2.1928795446880345E-5 24-25 1.206083749578419E-4 2.412167499156838E-4 0.0 1.8639476129848293E-4 2.1928795446880345E-5 26-27 1.3157277268128207E-4 2.412167499156838E-4 0.0 3.3989632942664537E-4 2.1928795446880345E-5 28-29 1.3157277268128207E-4 2.6314554536256414E-4 0.0 9.429382042158548E-4 2.1928795446880345E-5 30-31 1.5350156812816241E-4 2.6314554536256414E-4 0.0 0.002927494192158526 2.1928795446880345E-5 32-33 2.1928795446880345E-4 2.6314554536256414E-4 0.0 0.006118133929679616 2.1928795446880345E-5 34-35 2.3025235219224362E-4 2.960387385328847E-4 0.0 0.010317498257757202 2.1928795446880345E-5 36-37 2.412167499156838E-4 3.2893193170320517E-4 0.0 0.016391774596543056 2.1928795446880345E-5 38-39 2.412167499156838E-4 3.2893193170320517E-4 0.0 0.025053648798060792 2.1928795446880345E-5 40-41 2.412167499156838E-4 3.6182512487352566E-4 0.0 0.03361684342006757 2.1928795446880345E-5 42-43 2.412167499156838E-4 3.7278952259696586E-4 0.0 0.04260764955328851 2.1928795446880345E-5 44-45 2.412167499156838E-4 4.0568271576728635E-4 0.0 0.05158749128878601 2.1928795446880345E-5 46-47 2.412167499156838E-4 4.6050470438448724E-4 0.0 0.061422556046711846 2.1928795446880345E-5 48-49 2.412167499156838E-4 5.043622952782479E-4 0.0 0.0718606626794269 2.1928795446880345E-5 50-51 2.412167499156838E-4 5.262910907251283E-4 0.0 0.08165186984645896 2.1928795446880345E-5 52-53 2.850743408094445E-4 5.262910907251283E-4 0.0 0.09128957544536287 2.1928795446880345E-5 54-55 2.850743408094445E-4 5.262910907251283E-4 0.0 0.10072992188524485 2.1928795446880345E-5 56-57 2.850743408094445E-4 5.482198861720086E-4 0.0 0.11024701910919094 2.1928795446880345E-5 58-59 2.850743408094445E-4 5.482198861720086E-4 0.0 0.11910625246973058 2.1928795446880345E-5 60-61 2.850743408094445E-4 5.482198861720086E-4 0.0 0.12788873504620615 3.289319317032052E-5 62-63 2.850743408094445E-4 5.482198861720086E-4 0.0 0.1361120333387863 4.385759089376069E-5 64-65 2.850743408094445E-4 6.3593506795953E-4 0.0 0.14417086566551482 4.385759089376069E-5 66-67 2.850743408094445E-4 6.688282611298505E-4 0.0 0.15251477233305277 4.385759089376069E-5 68-69 3.0700313625632483E-4 6.797926588532906E-4 0.0 0.16038720989848282 4.385759089376069E-5 70-71 3.0700313625632483E-4 6.797926588532906E-4 0.0 0.16670270298718437 4.385759089376069E-5 72-73 3.0700313625632483E-4 6.797926588532906E-4 0.0 0.17165861075817934 4.385759089376069E-5 74-75 3.0700313625632483E-4 7.126858520236112E-4 0.0 0.1763952305747055 4.385759089376069E-5 76-77 3.0700313625632483E-4 7.675078406408121E-4 0.0 0.18050687972099555 4.385759089376069E-5 78-79 3.0700313625632483E-4 7.894366360876924E-4 0.0 0.18276554565202424 4.385759089376069E-5 80-81 3.0700313625632483E-4 7.894366360876924E-4 0.0 0.18362076867445257 4.385759089376069E-5 82-83 3.2893193170320517E-4 7.894366360876924E-4 0.0 0.18428959693558242 4.385759089376069E-5 84-85 3.508607271500855E-4 7.894366360876924E-4 0.0 0.18451984928777465 4.385759089376069E-5 86-87 3.508607271500855E-4 7.894366360876924E-4 0.0 0.1845856356741153 5.482198861720086E-5 88 3.7278952259696586E-4 8.332942269814531E-4 0.0 0.18459660007183873 6.578638634064103E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4450 0.0 42.84006 1 GTATCAA 7625 0.0 32.298386 1 TCAACGC 8445 0.0 27.899382 4 ATCAACG 8615 0.0 27.349442 3 CAACGCA 8660 0.0 27.111967 5 AACGCAG 9075 0.0 26.007355 6 TATCAAC 9335 0.0 25.768381 2 ACGCAGA 10700 0.0 22.09587 7 CGCAGAG 10810 0.0 21.833185 8 GTACATG 12555 0.0 21.635927 1 TACATGG 12640 0.0 20.84313 2 ACATGGG 12565 0.0 20.249262 3 TGCGCGA 420 1.4927307E-5 18.67331 94 CATGGGG 9535 0.0 18.532536 4 GCAGAGT 13690 0.0 17.29984 9 GTGGTAT 2700 0.0 16.3638 1 GAGTACT 6950 0.0 16.27363 12-13 TATAGCG 280 1.9257823E-7 16.069473 5 GAGTACA 9190 0.0 16.025482 1 CAGAGTA 13050 0.0 15.907157 10-11 >>END_MODULE