##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140314_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11622126 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.922630334587666 31.0 31.0 34.0 30.0 34.0 2 32.0341860860913 33.0 31.0 34.0 30.0 34.0 3 31.76764896543025 31.0 31.0 34.0 30.0 34.0 4 35.85034605544631 37.0 35.0 37.0 35.0 37.0 5 35.77812648047354 37.0 35.0 37.0 35.0 37.0 6 35.81946168885108 37.0 35.0 37.0 35.0 37.0 7 35.79945674311223 37.0 35.0 37.0 35.0 37.0 8 35.79347410275882 37.0 35.0 37.0 33.0 37.0 9 37.563305887408205 39.0 37.0 39.0 35.0 39.0 10-11 37.46396188614716 39.0 37.0 39.0 34.5 39.0 12-13 37.414291584861495 39.0 37.0 39.0 34.0 39.0 14-15 38.642913912652475 40.0 38.0 41.0 34.0 41.0 16-17 38.56800322075324 40.0 38.0 41.0 34.0 41.0 18-19 38.56364691795632 40.0 38.0 41.0 34.0 41.0 20-21 38.63196188869032 40.0 38.0 41.0 34.0 41.0 22-23 38.585290355161554 40.0 38.0 41.0 34.0 41.0 24-25 38.48637399959665 40.0 38.0 41.0 34.0 41.0 26-27 38.329793198669904 40.0 38.0 41.0 34.0 41.0 28-29 38.196982455421576 40.0 38.0 41.0 33.0 41.0 30-31 38.07766980052583 40.0 37.5 41.0 33.0 41.0 32-33 37.8756068837478 40.0 37.0 41.0 33.0 41.0 34-35 37.95969951551939 40.0 37.0 41.0 33.0 41.0 36-37 37.92721070452959 40.0 37.0 41.0 33.0 41.0 38-39 37.867461701340225 40.0 37.0 41.0 33.0 41.0 40-41 37.82525613942167 40.0 37.0 41.0 33.0 41.0 42-43 37.87263144699175 40.0 37.0 41.0 33.0 41.0 44-45 37.90927681360491 40.0 37.0 41.0 33.0 41.0 46-47 37.8600657567647 40.0 37.0 41.0 33.0 41.0 48-49 37.77389836652708 40.0 37.0 41.0 33.0 41.0 50-51 37.66144404305466 40.0 37.0 41.0 32.0 41.0 52-53 37.39709708739314 39.5 36.0 41.0 31.0 41.0 54-55 37.332002693481144 39.0 36.0 41.0 31.0 41.0 56-57 37.15999751087729 39.0 35.5 41.0 31.0 41.0 58-59 36.986652411271564 39.0 35.0 40.5 31.0 41.0 60-61 36.82130059665958 39.0 35.0 40.0 31.0 41.0 62-63 36.57389506313141 38.0 35.0 40.0 31.0 41.0 64-65 36.22562742685761 38.0 35.0 40.0 30.0 41.0 66-67 35.98492861807039 37.0 34.0 40.0 30.0 41.0 68-69 35.70489260483425 37.0 34.0 39.5 29.5 41.0 70-71 35.435514754375106 36.0 34.0 39.0 29.0 41.0 72-73 35.14281208881795 36.0 34.0 39.0 29.0 40.0 74-75 34.8171651294446 35.5 34.0 38.5 29.0 40.0 76-77 33.57597475350664 34.5 31.5 36.5 28.0 39.0 78-79 34.21482777819138 35.0 33.0 37.0 29.0 39.0 80-81 34.15146149204654 35.0 33.5 36.5 29.0 39.0 82-83 33.88204878218865 35.0 33.0 36.0 29.0 38.0 84-85 33.648446089558334 35.0 33.0 36.0 29.0 37.0 86-87 33.44697815350585 35.0 33.0 35.0 29.0 37.0 88-89 33.27765074699229 35.0 33.0 35.0 29.0 36.0 90-91 33.14608394767602 35.0 33.0 35.0 29.0 36.0 92-93 33.124532555775794 35.0 33.0 35.0 29.0 36.0 94-95 33.12250184505849 35.0 33.0 35.0 29.0 35.5 96-97 33.11624605035976 35.0 33.0 35.0 29.0 35.0 98-99 33.23083356254089 34.0 33.0 35.0 29.0 35.0 100 32.08634441262045 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 14.0 20 84.0 21 444.0 22 2021.0 23 6890.0 24 17857.0 25 38165.0 26 68643.0 27 107277.0 28 154465.0 29 204676.0 30 259228.0 31 320959.0 32 395820.0 33 499397.0 34 659459.0 35 902864.0 36 1372906.0 37 2285580.0 38 2814550.0 39 1460314.0 40 50510.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.84639935929106 20.63522629164406 13.645618710380528 24.872755638684353 2 14.810555982171838 21.34280180539574 40.63316721113307 23.21347500129935 3 17.926875543696646 26.032647182070296 31.073798188409224 24.966679085823834 4 12.567383609659444 18.272353556081242 38.031739077275084 31.12852375698423 5 12.979518549360074 37.848144134730596 36.09170989886016 13.08062741704917 6 30.13688717537566 37.92363806759624 18.441169885785097 13.498304871243006 7 26.45588251237338 32.3792910178396 22.78041900423382 18.384407465553203 8 24.60641022133128 36.65963525089988 21.326674654878115 17.407279872890726 9 25.09563224490941 16.42492087936407 20.899067864175624 37.580379011550896 10-11 24.136423060634517 26.552009503252677 29.03276904759078 20.27879838852203 12-13 24.80631340599818 23.88017906534484 28.993636792442278 22.3198707362147 14-15 21.9456655484389 25.56418216811826 26.02559578142025 26.46455650202259 16-17 22.02667608780311 28.93640337102763 26.7483381222007 22.28858241896856 18-19 22.071691015849236 27.959854986051567 28.2315786729323 21.736875325166896 20-21 22.48305426378601 27.089265685481113 28.080152955839765 22.34752709489311 22-23 22.26658314642682 27.44664806192798 27.958608257230406 22.328160534414792 24-25 22.3288627021347 27.544688523111365 28.075329229038193 22.051119545715743 26-27 22.23683590726226 27.59508949181319 28.097397239830553 22.070677361093995 28-29 21.889904642607032 27.36127977815055 28.400065725381413 22.348749853861 30-31 22.232728925445155 27.203371362380185 27.937448584116215 22.62645112805845 32-33 22.35319159348306 27.293394214472848 28.332821226721617 22.02059296532248 34-35 22.30929524253488 27.735816401609302 28.189476732758518 21.7654116230973 36-37 22.0933967551765 27.498424901357026 27.94604468595204 22.462133657514435 38-39 22.082391218237525 27.343530966510844 28.235438642613214 22.33863917263842 40-41 22.21496912030439 27.23428183963356 28.320386368346938 22.23036267171511 42-43 22.40905145975986 27.192742748025978 28.217254519301516 22.180951272912647 44-45 22.103119098022937 27.561512255767788 28.073203690728533 22.26216495548074 46-47 22.561923307789478 27.153063505259507 27.598973345153084 22.686039841797935 48-49 22.330172042392014 27.28446733399574 27.64594873890534 22.739411884706904 50-51 22.11936396377992 27.40549202520908 27.945771177425154 22.529372833585846 52-53 22.214335620363475 27.503377468500183 28.11236386809194 22.169923043044403 54-55 22.188370358273122 27.525539465005465 27.71734572643233 22.56874445028908 56-57 22.564428747173586 27.836336676844258 27.25889927524654 22.34033530073562 58-59 22.008998256794907 28.226560894422025 27.808957862158884 21.955482986624183 60-61 22.515705412988915 28.495933417848974 27.038798577701574 21.949562591460538 62-63 22.176932174958914 28.743049379640016 27.033889382962133 22.046129062438936 64-65 22.171933621575015 28.47549823607017 27.133923648219575 22.21864449413524 66-67 22.295843607083548 28.214039132380947 27.189447624255674 22.300669636279828 68-69 22.311016063553275 27.910259185783037 27.362414578455162 22.416310172208522 70-71 22.325414472819542 27.672262709113976 27.448767913996726 22.55355490406976 72-73 22.3804563448412 27.667162190600386 27.405884946969376 22.546496517589034 74-75 22.270177047872345 27.798339096525954 27.41351719836595 22.517966657235753 76-77 22.41334187631117 27.72637968043555 27.319304077252898 22.540974366000388 78-79 22.32254880951038 27.710368707774556 27.324229368042317 22.642853114672743 80-81 22.320242502997957 27.75358716835395 27.39080235408763 22.535367974560465 82-83 22.33369720548967 27.75659248684007 27.504688129789884 22.405022177880376 84-85 22.46613520474899 27.73590544817247 27.379018694286415 22.418940652792127 86-87 22.30790144317431 27.763425777578842 27.428388257719007 22.500284521527842 88-89 22.400501126608066 27.70955494604778 27.351567562289336 22.538376365054816 90-91 22.37243328993265 27.799996944539444 27.387823940420493 22.43974582510741 92-93 22.411083043026476 27.721854203266073 27.49025068309833 22.37681207060912 94-95 22.242626184670023 27.84854156892822 27.487975969552036 22.42085627684972 96-97 22.267914627810928 27.93329012815244 27.570481336001425 22.228313908035208 98-99 23.388527250095137 29.914995689740714 27.733031042992934 18.963446017171215 100 29.957749005586038 41.37603385028425 28.666217144129707 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1877.0 1 1687.0 2 2346.0 3 3404.5 4 4407.5 5 6884.5 6 9186.0 7 10714.5 8 11741.0 9 11672.0 10 10776.5 11 9614.0 12 9917.0 13 12817.5 14 19836.5 15 29688.0 16 38426.5 17 44503.5 18 47374.0 19 47268.5 20 45912.5 21 44746.5 22 45845.0 23 51137.5 24 61284.5 25 76734.0 26 97226.5 27 121211.0 28 147369.0 29 176886.5 30 205604.0 31 232741.5 32 260296.5 33 285857.5 34 309940.5 35 334272.0 36 361688.5 37 388096.5 38 407826.5 39 422307.0 40 438761.5 41 457047.5 42 470381.5 43 482189.0 44 493829.5 45 502896.0 46 519303.5 47 539148.0 48 560101.5 49 559407.5 50 535915.5 51 515394.5 52 488855.0 53 455006.0 54 419230.5 55 386143.0 56 354119.5 57 320357.0 58 283391.0 59 240944.0 60 198372.0 61 161020.0 62 129008.0 63 101358.5 64 77243.0 65 59021.0 66 45344.5 67 35118.5 68 27131.0 69 20288.0 70 15151.0 71 11315.0 72 8324.5 73 5962.5 74 4165.0 75 2935.0 76 2009.0 77 1334.5 78 899.5 79 581.0 80 381.5 81 263.0 82 194.0 83 130.0 84 82.0 85 60.0 86 46.5 87 35.0 88 23.5 89 14.5 90 10.0 91 6.5 92 4.5 93 3.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008277315183125704 3 0.002546866210192524 4 4.216096091197084E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.3336630492562205E-4 16-17 2.75336887588381E-4 18-19 0.001802596185930182 20-21 6.883696421071579E-5 22-23 0.0016780643089318115 24-25 2.8835109353709225E-4 26-27 0.002609210979766473 28-29 0.005614697321276601 30-31 0.0028621121152774148 32-33 0.0022302665796501814 34-35 0.002339454093170629 36-37 0.0024670796867176234 38-39 0.0 40-41 7.033441342657243E-4 42-43 0.006340332893089855 44-45 0.0038280708484639764 46-47 5.926684432630689E-4 48-49 0.01585189358792531 50-51 0.011223428392342305 52-53 0.01472922808591806 54-55 0.012947249146088384 56-57 0.011233268728283783 58-59 0.017425571445900068 60-61 0.00900852017666864 62-63 0.020011517987283747 64-65 0.014596297858335269 66-67 0.03023293201618578 68-69 0.0214910983014153 70-71 0.020986788835199964 72-73 0.019269679159841988 74-75 0.00959859616407992 76-77 0.012068125458851784 78-79 0.01230378368978406 80-81 0.009461515158462084 82-83 0.0044699313630733924 84-85 0.0029510420940876874 86-87 0.01386626467818666 88-89 0.0012175469228046176 90-91 2.2176680628940517E-4 92-93 0.0010413549659144445 94-95 0.0028307988610453707 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 291.0 20-21 910.0 22-23 2033.0 24-25 4747.0 26-27 7333.0 28-29 16314.0 30-31 34785.0 32-33 44052.0 34-35 60216.0 36-37 89771.0 38-39 104544.0 40-41 103240.0 42-43 112238.0 44-45 126616.0 46-47 125865.0 48-49 118472.0 50-51 110694.0 52-53 107922.0 54-55 119672.0 56-57 130106.0 58-59 132972.0 60-61 136405.0 62-63 138122.0 64-65 146484.0 66-67 156112.0 68-69 139057.0 70-71 119091.0 72-73 111255.0 74-75 112864.0 76-77 113002.0 78-79 120146.0 80-81 122389.0 82-83 119409.0 84-85 120032.0 86-87 127234.0 88-89 135499.0 90-91 143937.0 92-93 156533.0 94-95 194762.0 96-97 430367.0 98-99 2377043.0 100-101 4849590.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.33850621583157 #Duplication Level Percentage of deduplicated Percentage of total 1 89.33045599839231 75.33997218483479 2 7.266861860324222 12.257525483530877 3 1.8655365553697647 4.720096991127417 4 0.7168213881651969 2.4182258040564593 5 0.333065488621541 1.404512289119341 6 0.1714351496187433 0.8675150659039437 7 0.09807933101242297 0.5790304987765086 8 0.05932596464328302 0.4002770590262184 9 0.037302063610047016 0.28314002912753655 >10 0.11826028863985212 1.518351425875083 >50 0.0023019006563701223 0.12893919241719162 >100 5.370291129111604E-4 0.0710707743719856 >500 1.6981833303379518E-5 0.01134320183261725 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.604277737136906E-6 2 0.0 8.604277737136906E-6 0.0 8.604277737136906E-6 8.604277737136906E-6 3 0.0 8.604277737136906E-6 0.0 8.604277737136906E-6 8.604277737136906E-6 4 0.0 3.4417110948547624E-5 0.0 8.604277737136906E-6 8.604277737136906E-6 5 0.0 3.4417110948547624E-5 0.0 8.604277737136906E-6 8.604277737136906E-6 6 0.0 3.4417110948547624E-5 0.0 8.604277737136906E-6 2.5812833211410718E-5 7 0.0 3.4417110948547624E-5 0.0 2.5812833211410718E-5 2.5812833211410718E-5 8 0.0 3.4417110948547624E-5 0.0 2.5812833211410718E-5 2.5812833211410718E-5 9 0.0 1.1185561058277978E-4 0.0 3.4417110948547624E-5 2.5812833211410718E-5 10-11 0.0 1.1615774945134824E-4 0.0 4.302138868568453E-5 2.5812833211410718E-5 12-13 0.0 1.2045988831991668E-4 0.0 4.302138868568453E-5 3.011497207997917E-5 14-15 0.0 1.8499197134844348E-4 0.0 5.1625666422821435E-5 4.732352755425298E-5 16-17 0.0 1.9789838795414885E-4 0.0 6.022994415995834E-5 6.022994415995834E-5 18-19 0.0 2.0650266569128574E-4 0.0 6.883422189709525E-5 6.022994415995834E-5 20-21 0.0 2.194090822969911E-4 0.0 9.464705510850596E-5 6.022994415995834E-5 22-23 0.0 2.581283321141072E-4 0.0 1.290641660570536E-4 6.45320830285268E-5 24-25 0.0 2.925454430626548E-4 0.0 1.763876936113066E-4 6.883422189709525E-5 26-27 0.0 3.183582762740655E-4 0.0 2.28013360034128E-4 7.743849963423215E-5 28-29 0.0 3.183582762740655E-4 0.0 5.678823306510359E-4 7.743849963423215E-5 30-31 0.0 3.7858822043402386E-4 0.0 0.0017896897693244766 7.743849963423215E-5 32-33 0.0 3.8719249817116075E-4 0.0 0.004401088062545527 7.743849963423215E-5 34-35 0.0 4.517245811996876E-4 0.0 0.007752454241160353 7.743849963423215E-5 36-37 0.0 5.162566642282144E-4 0.0 0.012398764219214282 7.743849963423215E-5 38-39 0.0 5.291630808339197E-4 0.0 0.0196650767682264 7.743849963423215E-5 40-41 0.0 5.850908861253097E-4 0.0 0.027249747593512584 7.743849963423215E-5 42-43 0.0 6.022994415995834E-4 0.0 0.03467523928066173 7.743849963423215E-5 44-45 0.0 6.797379412338156E-4 0.0 0.04224270155047364 7.743849963423215E-5 46-47 0.0 7.485721631309108E-4 0.0 0.0507437279547649 8.604277737136906E-5 48-49 0.0 7.485721631309108E-4 0.0 0.059352307830770376 1.0325133284564287E-4 50-51 0.0 8.088021072908692E-4 0.0 0.06731126473762201 1.0325133284564287E-4 52-53 0.0 8.174063850280061E-4 0.0 0.0755369542543249 1.0755347171421132E-4 54-55 0.0 8.518234959765537E-4 0.0 0.08337545127285662 1.1185561058277978E-4 56-57 0.0 8.776363291879644E-4 0.0 0.09111930123627983 1.1185561058277978E-4 58-59 0.0 8.819384680565328E-4 0.0 0.09914709236502856 1.1185561058277978E-4 60-61 0.0 9.464705510850597E-4 0.0 0.10648654127480635 1.1185561058277978E-4 62-63 0.0 9.679812454279019E-4 0.0 0.11372704099060706 1.2045988831991668E-4 64-65 0.0 0.0010411176061935657 0.0 0.12080836156827073 1.2045988831991668E-4 66-67 0.0 0.0010411176061935657 0.0 0.12819943614447132 1.2045988831991668E-4 68-69 0.0 0.0010497218839307025 0.0 0.13489356422396384 1.2045988831991668E-4 70-71 0.0 0.0010669304394049764 0.0 0.14073156666861125 1.290641660570536E-4 72-73 0.0 0.0010798368560106816 0.0 0.1451111440368139 1.290641660570536E-4 74-75 0.0 0.0011099518280906608 0.0 0.1490820182125026 1.290641660570536E-4 76-77 0.0 0.001148671077907777 0.0 0.15286359827797427 1.290641660570536E-4 78-79 0.0 0.0011615774945134823 0.0 0.15514803401718413 1.290641660570536E-4 80-81 0.0 0.0011701817722506193 0.0 0.1559009083191836 1.376684437941905E-4 82-83 0.0 0.0011787860499877561 0.0 0.1563913521502004 1.548769992684643E-4 84-85 0.0 0.0011787860499877561 0.0 0.15659785481589167 1.548769992684643E-4 86-87 0.0 0.0011959946054620298 0.0 0.1567183147042116 1.548769992684643E-4 88 0.0 0.0012218074386734406 0.0 0.1567183147042116 1.548769992684643E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 14670 0.0 44.95008 1 GGTATCA 10795 0.0 41.645744 1 TATACAC 19200 0.0 37.451748 3 TTATACA 19185 0.0 35.117805 2 GTATCAA 18865 0.0 32.4609 1 TCAACGC 20725 0.0 28.261517 4 ATCAACG 21005 0.0 27.826845 3 CAACGCA 21115 0.0 27.60392 5 TACACAT 25885 0.0 27.28922 5 AACGCAG 22095 0.0 26.453627 6 TATCAAC 22710 0.0 26.280506 2 ACACATC 26030 0.0 25.880127 6 ACATCTC 26485 0.0 25.080317 8 ATACACA 32580 0.0 23.275854 4 CACATCT 28625 0.0 23.14816 7 ACGCAGA 26465 0.0 22.008226 7 CGCAGAG 26865 0.0 21.619638 8 CATCTCC 30765 0.0 21.537985 9 GTACATG 28140 0.0 20.802288 1 TACATGG 28065 0.0 20.09994 2 >>END_MODULE