##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140311_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7831368 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00469049596443 31.0 31.0 34.0 30.0 34.0 2 32.10493415709746 33.0 31.0 34.0 30.0 34.0 3 31.84622367382046 31.0 31.0 34.0 30.0 34.0 4 35.90514722332037 37.0 35.0 37.0 35.0 37.0 5 35.841550160840356 37.0 35.0 37.0 35.0 37.0 6 35.88293003214764 37.0 35.0 37.0 35.0 37.0 7 35.86578717792345 37.0 35.0 37.0 35.0 37.0 8 35.86353648557953 37.0 35.0 37.0 35.0 37.0 9 37.64309773209483 39.0 37.0 39.0 35.0 39.0 10-11 37.550055175545324 39.0 37.0 39.0 35.0 39.0 12-13 37.506865339491135 39.0 37.0 39.0 35.0 39.0 14-15 38.77001342549603 40.0 38.0 41.0 34.5 41.0 16-17 38.70822026241137 40.0 38.0 41.0 34.0 41.0 18-19 38.69937091450689 40.0 38.0 41.0 34.0 41.0 20-21 38.760177299667916 40.0 38.0 41.0 34.0 41.0 22-23 38.71700624247124 40.0 38.0 41.0 34.0 41.0 24-25 38.6272979995727 40.0 38.0 41.0 34.0 41.0 26-27 38.483303603382694 40.0 38.0 41.0 34.0 41.0 28-29 38.35807413966752 40.0 38.0 41.0 34.0 41.0 30-31 38.24380948576268 40.0 38.0 41.0 34.0 41.0 32-33 38.065908530060675 40.0 37.5 41.0 33.0 41.0 34-35 38.15870558022403 40.0 38.0 41.0 33.0 41.0 36-37 38.11981215966231 40.0 38.0 41.0 33.0 41.0 38-39 38.086484714465755 40.0 38.0 41.0 33.0 41.0 40-41 38.02700148943974 40.0 37.0 41.0 33.0 41.0 42-43 38.059029493216926 40.0 37.0 41.0 33.0 41.0 44-45 38.08720329955182 40.0 37.0 41.0 33.0 41.0 46-47 38.031928547326125 40.0 37.0 41.0 33.0 41.0 48-49 37.941473174103336 40.0 37.0 41.0 33.0 41.0 50-51 37.84367525002227 40.0 37.0 41.0 33.0 41.0 52-53 37.57020721305945 40.0 36.0 41.0 32.0 41.0 54-55 37.514019439403874 39.0 36.0 41.0 32.0 41.0 56-57 37.34521273693381 39.0 36.0 41.0 31.5 41.0 58-59 37.16922577526152 39.0 35.0 41.0 31.0 41.0 60-61 37.0153775287268 39.0 35.0 40.5 31.0 41.0 62-63 36.76477080732364 38.5 35.0 40.0 31.0 41.0 64-65 36.396728733294154 38.0 35.0 40.0 31.0 41.0 66-67 36.14401863364972 37.0 35.0 40.0 30.0 41.0 68-69 35.84912208972537 37.0 34.0 39.5 30.0 41.0 70-71 35.56914150075586 36.0 34.0 39.0 30.0 41.0 72-73 35.27117684756756 36.0 34.0 39.0 30.0 40.5 74-75 34.945719652876235 35.5 34.0 38.5 29.5 40.0 76-77 33.69869502883361 34.5 32.5 36.5 28.5 39.0 78-79 34.314184556223935 35.0 33.5 37.0 29.0 39.0 80-81 34.24172126700193 35.0 34.0 36.5 29.0 39.0 82-83 33.97418065712968 35.0 34.0 36.0 29.0 37.5 84-85 33.74675314713908 35.0 33.0 36.0 29.0 37.0 86-87 33.55346430398076 35.0 33.0 35.0 29.0 37.0 88-89 33.390832429478834 35.0 33.0 35.0 29.0 36.0 90-91 33.263187802760086 35.0 33.0 35.0 29.0 36.0 92-93 33.2439753910554 35.0 33.0 35.0 29.0 36.0 94-95 33.2402192402667 35.0 33.0 35.0 29.0 35.5 96-97 33.225586789410556 35.0 33.0 35.0 29.0 35.0 98-99 33.327959751823116 35.0 33.0 35.0 29.5 35.0 100 32.19573892271363 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 11.0 20 48.0 21 256.0 22 1160.0 23 3992.0 24 10506.0 25 22908.0 26 41165.0 27 65106.0 28 93755.0 29 125735.0 30 159872.0 31 199894.0 32 247700.0 33 312960.0 34 419389.0 35 581657.0 36 901135.0 37 1536277.0 38 1957106.0 39 1107891.0 40 42845.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.1247986303287 20.035669374750363 13.216694707744548 24.62283728717639 2 15.260766104429035 21.22144616328431 40.11294471246246 23.404843019824195 3 18.455800224156466 25.51005045627474 30.341839250162522 25.692310069406272 4 12.792752483394557 17.47368929134142 38.391575771993395 31.341982453270635 5 13.337222819818964 37.761384728696186 35.726669976433236 13.174722475051611 6 30.984905829990367 37.51026640556286 18.363560491602488 13.141267272844285 7 27.2980914700982 32.10634463863784 22.853542318532345 17.74202157273161 8 24.939269869580897 36.49827207711348 20.973551491897712 17.588906561407917 9 25.70802444732517 16.290053027772412 20.92225777156686 37.079664753335564 10-11 24.59429821201098 26.385639137376764 28.897084136513566 20.122978514098687 12-13 25.12630615749381 23.775258677666532 28.992769845574873 22.105665319264784 14-15 22.16716575028606 25.415799798578863 26.21112213943108 26.205912311703994 16-17 22.17641910958979 28.519141442552883 26.94893233863836 22.355507109218973 18-19 22.144771638682556 27.985220712455135 28.281240622482034 21.588767026380275 20-21 22.810143199004987 27.21417662487581 28.107765743079483 21.86791443303972 22-23 22.641598831497586 27.09990500234764 27.908103420432713 22.350392745722054 24-25 22.44632205064351 27.161240683083733 28.00501385701988 22.387423409252886 26-27 22.452734651160785 27.347751124270147 27.86829051837024 22.331223706198827 28-29 22.415045219926988 27.467829244634455 27.853771520254472 22.263354015184085 30-31 22.622067367579067 27.293218422981063 27.801625418453213 22.283088790986664 32-33 22.37902508945179 27.40375666335386 27.82036356046963 22.39685468672472 34-35 22.535268306007154 27.42302984519258 27.795837204094653 22.24586464470561 36-37 22.55457122310886 27.379052813474214 27.687036763617378 22.37933919979955 38-39 22.390468406486754 27.498288145830745 27.803005735671338 22.308237712011163 40-41 22.596293243137428 27.353425407400927 27.705902076317717 22.344379273143925 42-43 22.523204160097734 27.411407428855057 27.554591334322193 22.510797076725016 44-45 22.582292730580654 27.4909682511802 27.45775651576165 22.4689825024775 46-47 22.572200723498195 27.46915154048593 27.30230128042751 22.65634645558837 48-49 22.5683386647062 27.52953174686244 27.305066423582197 22.597063164849164 50-51 22.50654812556675 27.579267995485502 27.312053973673585 22.602129905274165 52-53 22.63090165969847 27.53395710762756 27.186826492380316 22.64831474029365 54-55 22.626767517785353 27.419428530313795 27.240292480236 22.71351147166485 56-57 22.641690439230146 27.5062915376424 27.23579311470612 22.616224908421334 58-59 22.58932669290289 27.600723978668995 27.267086761980835 22.542862566447276 60-61 22.70249093469687 27.51315110512016 27.22481406388479 22.559543896298177 62-63 22.70004211667772 27.605999690176162 27.10106852915975 22.59288966398637 64-65 22.59414543108207 27.528291503808553 27.170310576574174 22.7072524885352 66-67 22.6468376210545 27.54135516494818 27.07547774372234 22.736329470274974 68-69 22.585851425047046 27.52167785782137 27.190837880784223 22.701632836347358 70-71 22.578644292865597 27.331097409369626 27.199661877150984 22.89059642061379 72-73 22.67571376806764 27.374106691647587 27.17257075268765 22.777608787597117 74-75 22.530161358510394 27.521859541523614 27.13856401689257 22.80941508307342 76-77 22.65932310631209 27.431022200436317 27.06317766239878 22.84647703085281 78-79 22.593014893439246 27.427890260604688 27.081249233779197 22.89784561217687 80-81 22.566075984820795 27.506421444893412 27.109709361305327 22.817793208980458 82-83 22.626051334175852 27.415037430555998 27.215365620672614 22.743545614595533 84-85 22.707115137472826 27.419991774814257 27.140553578219652 22.732339509493265 86-87 22.56059987418674 27.44483881649804 27.208287028553034 22.786274280762182 88-89 22.647412655220126 27.38563361745896 27.138882668348767 22.828071058972142 90-91 22.63730166223735 27.454179503008387 27.20212126917691 22.70639756557736 92-93 22.689994002386808 27.451003096334887 27.154087823847345 22.704915077430964 94-95 22.528378379937447 27.49962792854844 27.23561102592886 22.736382665585257 96-97 22.52654263488226 27.627021171044923 27.325249457653406 22.52118673641941 98-99 23.700543453198726 29.579861343737196 27.487085808354006 19.232509394710075 100 30.517059765860317 41.00669552542101 28.476244708718674 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 978.0 1 882.5 2 1263.5 3 1828.5 4 2316.5 5 3762.0 6 5162.0 7 6071.0 8 6540.5 9 6332.0 10 5775.5 11 5214.5 12 5614.0 13 7299.5 14 11083.0 15 16470.0 16 21395.5 17 24934.5 18 26737.5 19 27125.5 20 26878.0 21 26790.0 22 27858.5 23 31032.5 24 37046.0 25 46519.5 26 59583.0 27 75089.0 28 92281.0 29 112334.5 30 132244.5 31 150929.5 32 170828.5 33 189826.0 34 208674.0 35 228169.5 36 247241.5 37 264371.0 38 278783.5 39 290779.5 40 303122.0 41 315254.0 42 323700.5 43 331685.0 44 341470.5 45 350179.5 46 354554.0 47 357994.5 48 359338.0 49 354345.5 50 349109.5 51 341961.5 52 327965.0 53 311312.0 54 293345.5 55 273804.5 56 253758.5 57 231578.5 58 206401.0 59 177547.5 60 148560.0 61 122349.5 62 99447.0 63 78859.0 64 59942.5 65 45635.0 66 34651.5 67 26809.5 68 20664.5 69 15538.0 70 11784.0 71 8769.5 72 6574.0 73 4751.5 74 3276.5 75 2231.0 76 1518.5 77 1029.0 78 682.0 79 450.5 80 301.5 81 204.0 82 144.0 83 96.0 84 65.5 85 45.0 86 34.0 87 24.5 88 17.0 89 10.5 90 6.5 91 6.0 92 6.0 93 3.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008095648167727528 3 0.002949676225149935 4 6.512272185395961E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.9153741721752827E-4 16-17 2.873061258262924E-4 18-19 0.00176214423840126 20-21 5.107862737426229E-5 22-23 0.001596359075304536 24-25 2.554694900132825E-4 26-27 0.0025236939723965383 28-29 0.005351940951402458 30-31 0.0028255425458151152 32-33 0.00213461952303727 34-35 0.002376816480380446 36-37 0.0027370111915802514 38-39 0.0 40-41 6.099895738195126E-4 42-43 0.005828041817472831 44-45 0.004011540225448561 46-47 4.872618764935263E-4 48-49 0.01614927601350257 50-51 0.01095659283437422 52-53 0.01531945654192357 54-55 0.01281280584189127 56-57 0.011252808285795984 58-59 0.017481855935787154 60-61 0.009330207626626754 62-63 0.02035073905096586 64-65 0.014943946801999211 66-67 0.03157401710457034 68-69 0.022278534349152744 70-71 0.022116262522187992 72-73 0.02130841933773788 74-75 0.010713250400171412 76-77 0.01275905527906327 78-79 0.013233831967519987 80-81 0.009861751899667988 82-83 0.004948433595444322 84-85 0.003429974778252131 86-87 0.014295729077271854 88-89 0.0012889741064164315 90-91 2.679202872475025E-4 92-93 0.0012520366777084378 94-95 0.0027688271594256066 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 187.0 20-21 611.0 22-23 1316.0 24-25 2556.0 26-27 4745.0 28-29 11898.0 30-31 26104.0 32-33 32669.0 34-35 44658.0 36-37 68468.0 38-39 78428.0 40-41 76110.0 42-43 82335.0 44-45 92096.0 46-47 91631.0 48-49 87127.0 50-51 80843.0 52-53 78770.0 54-55 84199.0 56-57 86671.0 58-59 85602.0 60-61 82744.0 62-63 80123.0 64-65 83243.0 66-67 86286.0 68-69 86750.0 70-71 84913.0 72-73 80634.0 74-75 82227.0 76-77 82715.0 78-79 86807.0 80-81 87190.0 82-83 84733.0 84-85 84357.0 86-87 89729.0 88-89 94904.0 90-91 99738.0 92-93 106377.0 94-95 131119.0 96-97 286839.0 98-99 1597485.0 100-101 3215431.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.25776881719591 #Duplication Level Percentage of deduplicated Percentage of total 1 90.06396979993877 76.78653115962094 2 6.8439194191376345 11.669945992807083 3 1.7003776193242452 4.349112059108414 4 0.6412523097233963 2.1868696470356093 5 0.29537496414441367 1.2591505203705975 6 0.150632351245634 0.7705546907334551 7 0.08444127017676296 0.5039492003952585 8 0.0552503499947026 0.3768417253534012 9 0.03668999996628377 0.28152967815255125 >10 0.12562419745506156 1.6348357719791606 >50 0.0020511842257421938 0.11819662791975026 >100 3.919417071607753E-4 0.05149600413623488 >500 2.4592960181222747E-5 0.010986922387584652 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2769161147835218E-5 0.0 0.0 0.0 3 0.0 1.2769161147835218E-5 0.0 0.0 0.0 4 0.0 1.2769161147835218E-5 0.0 0.0 0.0 5 0.0 1.2769161147835218E-5 0.0 1.2769161147835218E-5 0.0 6 0.0 1.2769161147835218E-5 0.0 1.2769161147835218E-5 0.0 7 0.0 1.2769161147835218E-5 0.0 2.5538322295670436E-5 0.0 8 0.0 1.2769161147835218E-5 0.0 2.5538322295670436E-5 0.0 9 0.0 1.2769161147835218E-5 0.0 3.830748344350566E-5 0.0 10-11 0.0 1.2769161147835218E-5 0.0 6.384580573917609E-5 0.0 12-13 0.0 1.2769161147835218E-5 0.0 7.02303863130937E-5 6.384580573917609E-6 14-15 0.0 3.192290286958805E-5 0.0 8.299954746092892E-5 1.915374172175283E-5 16-17 0.0 3.830748344350566E-5 0.0 8.938412803484653E-5 2.5538322295670436E-5 18-19 0.0 3.830748344350566E-5 0.0 9.576870860876414E-5 2.5538322295670436E-5 20-21 0.0 3.830748344350566E-5 0.0 1.2769161147835217E-4 2.5538322295670436E-5 22-23 0.0 3.830748344350566E-5 0.0 1.5322993377402263E-4 5.107664459134087E-5 24-25 0.0 5.107664459134087E-5 0.0 2.1707573951319873E-4 6.384580573917609E-5 26-27 0.0 5.107664459134087E-5 0.0 3.128444481219629E-4 6.384580573917609E-5 28-29 0.0 5.107664459134087E-5 0.0 8.8107211920063E-4 6.384580573917609E-5 30-31 0.0 7.661496688701131E-5 0.0 0.0026432163576018903 7.02303863130937E-5 32-33 0.0 7.661496688701131E-5 0.0 0.0060908898675173994 7.661496688701131E-5 34-35 0.0 8.938412803484653E-5 0.0 0.010668634139016326 7.661496688701131E-5 36-37 0.0 1.0215328918268174E-4 0.0 0.017027676390638263 8.938412803484653E-5 38-39 0.0 1.0215328918268174E-4 0.0 0.026553470606923337 1.1492245033051697E-4 40-41 0.0 1.1492245033051697E-4 0.0 0.035721728311069026 1.1492245033051697E-4 42-43 0.0 1.1492245033051697E-4 0.0 0.04490275517636255 1.1492245033051697E-4 44-45 0.0 1.2130703090443458E-4 0.0 0.05437747274805628 1.1492245033051697E-4 46-47 0.0 1.2769161147835217E-4 0.0 0.06538448965749023 1.1492245033051697E-4 48-49 1.2769161147835218E-5 1.2769161147835217E-4 0.0 0.07628935327774151 1.2769161147835217E-4 50-51 1.2769161147835218E-5 1.5322993377402263E-4 0.0 0.08656852800174886 1.2769161147835217E-4 52-53 1.2769161147835218E-5 1.5322993377402263E-4 0.0 0.09641355124672982 1.404607726261874E-4 54-55 1.2769161147835218E-5 1.5322993377402263E-4 0.0 0.10598403752703231 1.5322993377402263E-4 56-57 1.2769161147835218E-5 1.5322993377402263E-4 0.0 0.11558006212963048 1.5961451434794025E-4 58-59 1.2769161147835218E-5 1.5322993377402263E-4 0.0 0.1259613901428205 1.6599909492185784E-4 60-61 1.2769161147835218E-5 1.5322993377402263E-4 0.0 0.13562126055115786 1.6599909492185784E-4 62-63 1.2769161147835218E-5 1.5322993377402263E-4 0.0 0.14446390464603376 1.6599909492185784E-4 64-65 1.2769161147835218E-5 1.6599909492185784E-4 0.0 0.15300008887336158 1.6599909492185784E-4 66-67 1.2769161147835218E-5 1.6599909492185784E-4 0.0 0.16150435019781983 1.6599909492185784E-4 68-69 1.2769161147835218E-5 1.6599909492185784E-4 0.0 0.1695808446238256 1.6599909492185784E-4 70-71 1.2769161147835218E-5 1.6599909492185784E-4 0.0 0.1765719603522654 1.7876825606969306E-4 72-73 1.2769161147835218E-5 1.6599909492185784E-4 0.0 0.18235639035223478 2.2984490066103394E-4 74-75 1.2769161147835218E-5 1.6599909492185784E-4 0.0 0.1864680602418377 2.2984490066103394E-4 76-77 1.2769161147835218E-5 1.6599909492185784E-4 0.0 0.19119903444711064 2.2984490066103394E-4 78-79 1.2769161147835218E-5 1.7876825606969306E-4 0.0 0.19395717325504305 2.2984490066103394E-4 80-81 1.2769161147835218E-5 1.7876825606969306E-4 0.0 0.19467224627932184 2.3622948123495154E-4 82-83 1.2769161147835218E-5 1.7876825606969306E-4 0.0 0.19518939730580914 2.489986423827868E-4 84-85 1.2769161147835218E-5 1.7876825606969306E-4 0.0 0.19543839594819196 2.5538322295670435E-4 86-87 1.2769161147835218E-5 1.7876825606969306E-4 0.0 0.19555331839852247 2.5538322295670435E-4 88 1.2769161147835218E-5 1.9153741721752827E-4 0.0 0.19555970297909636 2.5538322295670435E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6930 0.0 39.40884 1 GTATCAA 11875 0.0 31.395416 1 ATCAACG 12930 0.0 27.760857 3 TCAACGC 13055 0.0 27.4313 4 CAACGCA 13305 0.0 27.160385 5 AACGCAG 13745 0.0 26.320543 6 TATCAAC 14295 0.0 25.85271 2 ACGCAGA 16615 0.0 21.725065 7 GTACATG 19510 0.0 21.195362 1 CGCAGAG 17070 0.0 21.122145 8 TACATGG 19765 0.0 20.365911 2 ACATGGG 20000 0.0 19.49388 3 GCAGAGT 21075 0.0 17.146807 9 CATGGGG 15770 0.0 16.773445 4 GAGTACT 10905 0.0 16.177328 12-13 AGAGTAC 18250 0.0 15.765014 10-11 GAGTACA 14215 0.0 15.117899 1 CAGAGTA 20685 0.0 15.060087 10-11 TATACCG 550 0.0 14.798072 5 GTGGTAT 4405 0.0 14.783541 1 >>END_MODULE