##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140310_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13194855 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69140865890531 31.0 31.0 34.0 30.0 34.0 2 31.804008986836156 31.0 31.0 34.0 30.0 34.0 3 31.51539277998887 31.0 31.0 34.0 30.0 34.0 4 35.679706218825444 37.0 35.0 37.0 35.0 37.0 5 35.59105477096944 37.0 35.0 37.0 33.0 37.0 6 35.642103153085046 37.0 35.0 37.0 33.0 37.0 7 35.62520596095978 37.0 35.0 37.0 33.0 37.0 8 35.617862492615494 37.0 35.0 37.0 33.0 37.0 9 37.35882031291742 39.0 37.0 39.0 34.0 39.0 10-11 37.236946370384516 39.0 37.0 39.0 33.5 39.0 12-13 37.18489324058506 39.0 37.0 39.0 33.0 39.0 14-15 38.33931801448368 40.0 38.0 41.0 33.0 41.0 16-17 38.257597487808695 40.0 38.0 41.0 33.0 41.0 18-19 38.24006690486557 40.0 38.0 41.0 33.5 41.0 20-21 38.3049660211242 40.0 38.0 41.0 34.0 41.0 22-23 38.25207686097336 40.0 38.0 41.0 33.5 41.0 24-25 38.1394099706457 40.0 37.5 41.0 33.0 41.0 26-27 37.95708409546302 40.0 37.0 41.0 33.0 41.0 28-29 37.80257827466124 40.0 37.0 41.0 33.0 41.0 30-31 37.65858575948639 40.0 37.0 41.0 32.0 41.0 32-33 37.44444271527672 39.0 36.5 41.0 32.0 41.0 34-35 37.55825857905915 39.5 37.0 41.0 32.0 41.0 36-37 37.51641629531841 40.0 36.5 41.0 32.0 41.0 38-39 37.47457008943994 39.0 36.5 41.0 32.0 41.0 40-41 37.399524449341136 39.0 36.0 41.0 31.0 41.0 42-43 37.43198077632515 39.0 36.0 41.0 31.0 41.0 44-45 37.463535465504876 40.0 36.0 41.0 32.0 41.0 46-47 37.39944450092657 39.5 36.0 41.0 31.0 41.0 48-49 37.29863198660885 39.0 36.0 41.0 31.0 41.0 50-51 37.18888746248813 39.0 36.0 41.0 31.0 41.0 52-53 36.876589137709914 39.0 35.0 40.0 30.0 41.0 54-55 36.817774942866365 39.0 35.0 40.0 30.5 41.0 56-57 36.64546417532945 38.5 35.0 40.0 30.0 41.0 58-59 36.461242106875275 38.0 35.0 40.0 30.0 41.0 60-61 36.31043578673899 38.0 35.0 40.0 30.0 41.0 62-63 36.05399068128639 38.0 34.0 40.0 29.0 41.0 64-65 35.66952492926176 37.0 34.0 40.0 29.0 41.0 66-67 35.42304717175119 37.0 34.0 39.5 28.5 41.0 68-69 35.12780718388883 36.0 34.0 39.0 28.0 41.0 70-71 34.853626019717254 36.0 33.0 39.0 28.0 40.0 72-73 34.56521104990408 35.5 33.0 38.5 28.0 40.0 74-75 34.24324804294099 35.0 33.0 38.0 28.0 40.0 76-77 33.05863383392867 34.0 31.5 36.0 26.5 39.0 78-79 33.76263041413531 35.0 32.5 37.0 28.0 39.0 80-81 33.725002189690265 35.0 33.0 36.0 28.5 39.0 82-83 33.453450574480726 35.0 33.0 36.0 28.0 37.5 84-85 33.21533200021911 35.0 32.0 35.5 28.0 37.0 86-87 33.01230229799478 35.0 32.0 35.0 27.5 37.0 88-89 32.83485854172591 34.0 32.0 35.0 27.0 36.0 90-91 32.69935135227641 34.0 32.0 35.0 27.0 36.0 92-93 32.68711268771388 34.0 32.0 35.0 27.0 36.0 94-95 32.697013808149066 34.0 32.0 35.0 28.0 35.0 96-97 32.71002873607273 34.0 32.0 35.0 29.0 35.0 98-99 32.86851586948812 34.0 32.0 35.0 29.0 35.0 100 31.57956305119856 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 4.0 19 18.0 20 111.0 21 636.0 22 3068.0 23 9970.0 24 25937.0 25 54635.0 26 97603.0 27 152394.0 28 215436.0 29 283902.0 30 356523.0 31 437658.0 32 537180.0 33 670191.0 34 872384.0 35 1172189.0 36 1729667.0 37 2606699.0 38 2731553.0 39 1212018.0 40 25077.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.194116949371555 20.823942362382912 13.795975779953626 24.185964908291908 2 15.251601130487066 21.77592790761287 40.07364279364518 22.89882816825488 3 18.273079829292897 26.15628597608251 30.769561325791823 24.801072868832765 4 12.90137072781998 18.01167352478985 38.59978332397991 30.487172423410257 5 13.045130090478448 38.02334318944771 35.98238859009818 12.94913812997566 6 30.451823835881488 38.152378332312104 18.450077700740174 12.945720131066238 7 26.763590808690207 32.44480519111426 23.23083504896416 17.56076895123137 8 24.62419632500698 36.885073765494205 21.09915569363968 17.391574215859134 9 25.523183089166196 16.391457124765676 21.222415858302345 36.862943927765784 10-11 24.348604058172675 26.666170261060085 29.094355337743387 19.890870343023852 12-13 24.88441138610466 24.15780241616903 29.237892345160294 21.71989385256602 14-15 21.9089924546262 25.738133239963503 26.538086100324065 25.81478820508623 16-17 21.74777101035114 28.877506394837337 27.3090428227403 22.065679772071224 18-19 21.78678604255794 28.293238973691103 28.720030218367725 21.199944765383236 20-21 22.44736579031596 27.473842150462364 28.600880855204586 21.47791120401709 22-23 22.23001789766981 27.411973750690688 28.41806058055943 21.939947771080075 24-25 22.060986383478937 27.491642450015437 28.48833127408397 21.959039892421657 26-27 22.08441204359694 27.64749434470037 28.338801934022772 21.929291677679913 28-29 22.049906773072905 27.798037679469427 28.32188494521779 21.830170602239875 30-31 22.22596690007295 27.62150476171934 28.30903065716168 21.843497681046024 32-33 22.053165586551877 27.704042216212304 28.26260311287579 21.980189084360028 34-35 22.15236705370276 27.76040601065015 28.27455278338375 21.81267415226334 36-37 22.176373994153934 27.71412253624898 28.173209220797357 21.936294248799726 38-39 22.075391465966575 27.784381165510318 28.251035382367867 21.889191986155232 40-41 22.288995336534338 27.668879788757522 28.123753965019755 21.918370909688385 42-43 22.17057893455858 27.767941222777587 27.973041539085692 22.088438303578144 44-45 22.231167452063445 27.839590635571977 27.846556478389772 22.08268543397481 46-47 22.225682195103172 27.832905615144902 27.678032158382376 22.26338003136955 48-49 22.228151425353964 27.882884022249165 27.68570595731023 22.20325859508664 50-51 22.2011529810333 27.97955005622249 27.583580533289933 22.235716429454282 52-53 22.31447383244513 27.925170643880847 27.50818026749135 22.252175256182674 54-55 22.314966206123113 27.82019198346803 27.584376349401314 22.280465461007548 56-57 22.314396742560398 27.92716679427748 27.541049569593813 22.217386893568307 58-59 22.316495139722996 27.99191713463996 27.57978746046934 22.111800265167698 60-61 22.407567828066256 27.92698890546396 27.52673175186024 22.138711514609547 62-63 22.370301940968538 28.014126265660384 27.44654614263929 22.169025650731797 64-65 22.296530846117857 27.9572168402332 27.511278619244727 22.23497369440421 66-67 22.330591860823485 27.94988295662426 27.4071235658711 22.312401616681154 68-69 22.25344991604427 27.9451063700613 27.505238692618217 22.296205021276215 70-71 22.25497643972515 27.774140026045025 27.52999465145203 22.440888882777795 72-73 22.346164193467978 27.77668727035631 27.51765045857928 22.359498077596427 74-75 22.18133912595839 27.957916257548547 27.504280466054276 22.356464150438786 76-77 22.315812687916385 27.85011230646769 27.42824341778416 22.405831587831766 78-79 22.234573611117973 27.812769485311755 27.435633709145396 22.517023194424876 80-81 22.23804525532983 27.88921945452255 27.494792859564043 22.377942430583573 82-83 22.276984914222044 27.873680582100768 27.589141654660708 22.26019284901648 84-85 22.3846734100685 27.857165512680183 27.488340661530163 22.269820415721156 86-87 22.222004367163994 27.87945125215566 27.53948324676448 22.359061133915866 88-89 22.28913044716503 27.866684415412635 27.495901579687615 22.34828355773472 90-91 22.27712045288811 27.963881365247612 27.49906643822872 22.25993174363556 92-93 22.29328134749571 27.882962809098654 27.577778027452055 22.245977815953584 94-95 22.104521866054093 27.976089487579298 27.655961200624425 22.263427445742185 96-97 22.107102181308523 28.12485282043037 27.723230950874562 22.044814047386545 98-99 23.215126720114228 30.08618230671582 27.933859697008085 18.76483127616187 100 29.69668283832288 41.518700394868894 28.784616766808224 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2202.0 1 1995.5 2 2774.0 3 3944.5 4 5095.0 5 8206.0 6 11097.5 7 12908.5 8 13993.5 9 13602.0 10 12299.0 11 10961.0 12 11358.0 13 14790.5 14 23221.0 15 35096.0 16 45560.0 17 52901.5 18 56837.0 19 57480.5 20 56397.0 21 55267.0 22 56096.0 23 61534.5 24 72935.0 25 90357.0 26 113922.5 27 142092.5 28 173086.5 29 208289.0 30 243841.0 31 277220.0 32 309327.5 33 339744.5 34 369315.0 35 399460.5 36 430495.5 37 459289.5 38 481327.5 39 496998.5 40 514786.0 41 534455.5 42 547772.0 43 557880.5 44 569111.5 45 577039.5 46 579901.0 47 581379.5 48 578778.0 49 568096.0 50 555839.0 51 541738.5 52 519138.5 53 491708.0 54 462015.5 55 428436.5 56 393090.0 57 356156.0 58 317184.0 59 271691.5 60 223664.5 61 181301.0 62 145265.0 63 113566.5 64 85825.0 65 65102.0 66 49400.5 67 37861.0 68 29050.5 69 21524.5 70 15953.0 71 11817.0 72 8669.5 73 6191.5 74 4373.5 75 3068.0 76 2111.5 77 1436.0 78 953.0 79 630.5 80 413.0 81 273.0 82 192.5 83 126.5 84 90.5 85 66.5 86 49.0 87 37.5 88 26.5 89 15.5 90 11.0 91 11.5 92 10.0 93 6.5 94 3.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006790525549541847 3 0.0024630812540190855 4 3.031484620331182E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.1368067326241934E-4 16-17 2.387294138510806E-4 18-19 0.0017506823682412577 20-21 8.336975075627733E-5 22-23 0.0016751662403520185 24-25 2.502027210683201E-4 26-27 0.0025903925639424942 28-29 0.005541684474705246 30-31 0.0028138161720205985 32-33 0.0021169298201147465 34-35 0.00225195535215105 36-37 0.00263884667376266 38-39 0.0 40-41 6.467140615312762E-4 42-43 0.005839996673259348 44-45 0.003982607998852241 46-47 5.542578818707345E-4 48-49 0.015043123757847613 50-51 0.01058222946642066 52-53 0.014858654696149916 54-55 0.01245892724581983 56-57 0.010716024330201497 58-59 0.01680838642558169 60-61 0.008711792528027121 62-63 0.01967048380459079 64-65 0.013935863542314039 66-67 0.02907238889023693 68-69 0.019232429387757273 70-71 0.019743085380275464 72-73 0.018167291874902153 74-75 0.008941004896545857 76-77 0.01076983733347706 78-79 0.011515949859505412 80-81 0.00828867074126014 82-83 0.003498224537795196 84-85 0.002293227725685019 86-87 0.011316808131090338 88-89 9.809531594866345E-4 90-91 8.057200970280369E-5 92-93 5.754654419300563E-4 94-95 0.002126326099542021 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 384.0 20-21 1240.0 22-23 2697.0 24-25 5464.0 26-27 8496.0 28-29 18068.0 30-31 38682.0 32-33 49414.0 34-35 68086.0 36-37 99840.0 38-39 117250.0 40-41 117984.0 42-43 127584.0 44-45 144435.0 46-47 142850.0 48-49 134468.0 50-51 125311.0 52-53 121727.0 54-55 130373.0 56-57 135507.0 58-59 133293.0 60-61 131012.0 62-63 128265.0 64-65 133069.0 66-67 138398.0 68-69 140080.0 70-71 138721.0 72-73 132455.0 74-75 134566.0 76-77 134553.0 78-79 143540.0 80-81 147214.0 82-83 144259.0 84-85 146562.0 86-87 156819.0 88-89 168814.0 90-91 181872.0 92-93 201037.0 94-95 255163.0 96-97 533035.0 98-99 2706020.0 100-101 5476248.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.12168316328943 #Duplication Level Percentage of deduplicated Percentage of total 1 88.86738500109949 73.86806619611453 2 7.304192265828943 12.142735105679654 3 2.008671414631295 5.008924467184167 4 0.7870144232259368 2.616718541293012 5 0.4093143383297646 1.7011448372419076 6 0.22366618154912163 1.1154905686241317 7 0.12704390610697303 0.7392072317875353 8 0.07464350407645687 0.49635949568327614 9 0.04872051328978971 0.36447579623040594 >10 0.1473949930327768 1.7980883593641406 >50 0.0015678657092107824 0.08722429740451655 >100 3.699141533605428E-4 0.05323725847682445 >500 1.5678966854041048E-5 0.008327844915931937 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.515742310165591E-5 0.0 0.0 0.0 3 0.0 1.515742310165591E-5 0.0 0.0 7.578711550827955E-6 4 0.0 8.33658270591075E-5 0.0 0.0 7.578711550827955E-6 5 0.0 1.364168079149032E-4 0.0 0.0 7.578711550827955E-6 6 8.33658270591075E-5 1.364168079149032E-4 0.0 0.0 7.578711550827955E-6 7 8.33658270591075E-5 1.4399551946573115E-4 0.0 2.2736134652483866E-5 7.578711550827955E-6 8 9.094453860993546E-5 1.515742310165591E-4 0.0 3.031484620331182E-5 1.515742310165591E-5 9 9.094453860993546E-5 2.0462521187235478E-4 0.0 1.66731654118215E-4 3.031484620331182E-5 10-11 9.473389438534945E-5 2.0462521187235478E-4 0.0 1.856784329952849E-4 3.031484620331182E-5 12-13 9.852325016076342E-5 2.0462521187235478E-4 0.0 2.0841456764776877E-4 3.4104201978725795E-5 14-15 1.0231260593617739E-4 2.576761927281505E-4 0.0 2.576761927281505E-4 6.0629692406623646E-5 16-17 1.515742310165591E-4 2.6525490427897844E-4 0.0 3.1830588513477413E-4 7.578711550827955E-5 18-19 1.5915294256738707E-4 2.879910389314623E-4 0.0 3.599887986643279E-4 1.0610196171159138E-4 20-21 1.5915294256738707E-4 3.1072717358394616E-4 0.0 3.9788235641846767E-4 1.1368067326241934E-4 22-23 1.5915294256738707E-4 3.44831375562672E-4 0.0 4.357759141726074E-4 1.1747002903783331E-4 24-25 1.6294229834280105E-4 3.9788235641846767E-4 0.0 5.229310970071289E-4 1.2125938481324728E-4 26-27 1.66731654118215E-4 4.0925042374470957E-4 0.0 6.290330587187203E-4 1.2125938481324728E-4 28-29 1.66731654118215E-4 4.0925042374470957E-4 0.0 9.89021857383048E-4 1.2504874058866125E-4 30-31 1.66731654118215E-4 4.6988011615133323E-4 0.0 0.002387294138510806 1.2883809636407524E-4 32-33 1.66731654118215E-4 4.6988011615133323E-4 0.0 0.005202785479643391 1.515742310165591E-4 34-35 1.66731654118215E-4 5.418778758841988E-4 0.0 0.008654888591045524 1.5915294256738707E-4 36-37 1.66731654118215E-4 6.138756356170644E-4 0.0 0.013789465666731466 1.66731654118215E-4 38-39 1.70521009893629E-4 6.214543471678923E-4 0.0 0.02214120579574387 1.66731654118215E-4 40-41 1.7431036566904298E-4 6.82084039574516E-4 0.0 0.030602837242243282 1.66731654118215E-4 42-43 1.7431036566904298E-4 7.048201742269999E-4 0.0 0.03838996336071901 1.70521009893629E-4 44-45 1.7809972144445694E-4 8.071327801631772E-4 0.0 0.046923592566951285 1.7431036566904298E-4 46-47 1.8188907721987093E-4 8.791305398960428E-4 0.0 0.0557376341005642 1.7809972144445694E-4 48-49 1.8188907721987093E-4 8.829198956714567E-4 0.0 0.06421821232594069 1.8946778877069887E-4 50-51 2.0841456764776877E-4 9.208134534255965E-4 0.0 0.07270257990709258 2.008358560969408E-4 52-53 2.1220392342318276E-4 9.359708765272524E-4 0.0 0.08127031331530357 2.1599327919859674E-4 54-55 2.1599327919859674E-4 9.96600568933876E-4 0.0 0.09014498454132311 2.3115070230025263E-4 56-57 2.197826349740107E-4 0.001030704770912602 0.0 0.09871650730530954 2.4251876962649456E-4 58-59 2.197826349740107E-4 0.0010572302613404997 0.0 0.1071402451940548 2.500974811773225E-4 60-61 2.690442600543924E-4 0.0010648089728913278 0.0 0.11505242005311919 2.500974811773225E-4 62-63 3.3346330823643E-4 0.0010761770402175697 0.0 0.12260839546929467 2.576761927281505E-4 64-65 3.3346330823643E-4 0.0011330173768487792 0.0 0.13019847508744886 2.576761927281505E-4 66-67 3.37252664011844E-4 0.0011481747999504354 0.0 0.1376369804745865 2.576761927281505E-4 68-69 3.41042019787258E-4 0.001193647069255403 0.0 0.14496559454423713 2.6525490427897844E-4 70-71 3.713568659905698E-4 0.0012391193385603706 0.0 0.1510361424964503 2.842016831560483E-4 72-73 4.395652699480214E-4 0.0012656448289882685 0.0 0.15600777727379345 3.3346330823643E-4 74-75 4.4714398149884937E-4 0.0012808022520899246 0.0 0.15955840363535634 3.3346330823643E-4 76-77 4.5472269304967734E-4 0.0012959596751915803 0.0 0.1626315711692171 3.37252664011844E-4 78-79 4.5472269304967734E-4 0.0013186958098440641 0.0 0.16518938631762153 3.44831375562672E-4 80-81 4.5472269304967734E-4 0.0013186958098440641 0.0 0.16601546587666177 3.599887986643279E-4 82-83 4.5472269304967734E-4 0.0013186958098440641 0.0 0.16670512862778714 3.713568659905698E-4 84-85 4.5472269304967734E-4 0.0013376425887211341 0.0 0.16701585580137107 3.713568659905698E-4 86-87 4.585120488250913E-4 0.0013869042138015158 0.0 0.16718258745548928 3.8651428909222576E-4 88 4.6230140460050526E-4 0.0014172190600048277 0.0 0.16719395552281552 4.0167171219388165E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11875 0.0 41.99482 1 GTATCAA 20885 0.0 33.515503 1 TCAACGC 24420 0.0 27.803953 4 ATCAACG 24470 0.0 27.747772 3 CAACGCA 24995 0.0 27.164131 5 AACGCAG 26260 0.0 26.058918 6 TATCAAC 26785 0.0 25.688208 2 ACGCAGA 31050 0.0 21.840448 7 CGCAGAG 31675 0.0 21.383646 8 GTACATG 31640 0.0 21.227161 1 TACATGG 31850 0.0 20.648691 2 ACATGGG 32310 0.0 19.679916 3 GCAGAGT 38860 0.0 17.239668 9 CATGGGG 25240 0.0 17.233995 4 AGAGTAC 34170 0.0 16.69693 10-11 GAGTACT 22130 0.0 16.213366 12-13 GTGGTAT 7855 0.0 15.636359 1 TGGTATC 6950 0.0 15.426462 2 CAGAGTA 37870 0.0 15.233713 10-11 CGTCGAA 675 3.167832E-6 14.705243 94 >>END_MODULE