##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140308_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8215405 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02505439476204 33.0 31.0 34.0 30.0 34.0 2 32.13479189400888 33.0 31.0 34.0 30.0 34.0 3 31.871048597117245 31.0 31.0 34.0 30.0 34.0 4 35.924426854184304 37.0 35.0 37.0 35.0 37.0 5 35.866990489208995 37.0 35.0 37.0 35.0 37.0 6 35.908465498657705 37.0 35.0 37.0 35.0 37.0 7 35.89385270720068 37.0 35.0 37.0 35.0 37.0 8 35.89071056143915 37.0 35.0 37.0 35.0 37.0 9 37.669881886529026 39.0 37.0 39.0 35.0 39.0 10-11 37.58395550797557 39.0 37.0 39.0 35.0 39.0 12-13 37.53903331606902 39.0 37.0 39.0 35.0 39.0 14-15 38.80462837802884 40.0 38.0 41.0 35.0 41.0 16-17 38.74606181922863 40.0 38.0 41.0 34.0 41.0 18-19 38.74726942859178 40.0 38.0 41.0 34.0 41.0 20-21 38.8088671309594 40.0 38.0 41.0 34.5 41.0 22-23 38.76945482525361 40.0 38.0 41.0 34.0 41.0 24-25 38.68299930521858 40.0 38.0 41.0 34.0 41.0 26-27 38.541871332143074 40.0 38.0 41.0 34.0 41.0 28-29 38.42031503796234 40.0 38.0 41.0 34.0 41.0 30-31 38.30004608915195 40.0 38.0 41.0 34.0 41.0 32-33 38.117044449127874 40.0 37.5 41.0 33.5 41.0 34-35 38.201257035892155 40.0 38.0 41.0 34.0 41.0 36-37 38.16264816654625 40.0 38.0 41.0 33.0 41.0 38-39 38.12993865158588 40.0 38.0 41.0 33.0 41.0 40-41 38.07205208064347 40.0 37.5 41.0 33.0 41.0 42-43 38.09849343410738 40.0 37.5 41.0 33.0 41.0 44-45 38.12680492212793 40.0 37.5 41.0 33.0 41.0 46-47 38.07361547787808 40.0 37.0 41.0 33.0 41.0 48-49 37.984208484804775 40.0 37.0 41.0 33.0 41.0 50-51 37.8895151037366 40.0 37.0 41.0 33.0 41.0 52-53 37.63097024637145 40.0 36.5 41.0 32.0 41.0 54-55 37.5760877600067 39.5 36.0 41.0 32.0 41.0 56-57 37.411479615636125 39.0 36.0 41.0 32.0 41.0 58-59 37.243283012034894 39.0 35.5 41.0 32.0 41.0 60-61 37.09565327169236 39.0 35.0 41.0 31.0 41.0 62-63 36.85033667462436 38.5 35.0 40.0 31.0 41.0 64-65 36.498946491468885 38.0 35.0 40.0 31.0 41.0 66-67 36.25710729537714 37.5 35.0 40.0 31.0 41.0 68-69 35.97072458615614 37.0 34.5 40.0 30.0 41.0 70-71 35.69783837905164 36.5 34.0 39.0 30.0 41.0 72-73 35.40507554574288 36.0 34.0 39.0 30.0 40.5 74-75 35.0779032059657 35.5 34.0 38.5 30.0 40.0 76-77 33.836481517107266 34.5 32.5 37.0 28.5 39.0 78-79 34.44470919764022 35.0 34.0 37.0 29.0 39.0 80-81 34.368128680640595 35.0 34.0 37.0 30.0 39.0 82-83 34.09110516704114 35.0 34.0 36.0 29.0 38.5 84-85 33.8499564017349 35.0 33.5 36.0 29.0 37.0 86-87 33.64169615480567 35.0 33.0 35.5 29.0 37.0 88-89 33.46913017188864 35.0 33.0 35.0 29.0 36.5 90-91 33.3310779435632 35.0 33.0 35.0 29.0 36.0 92-93 33.2972497482685 35.0 33.0 35.0 29.0 36.0 94-95 33.28430518855603 35.0 33.0 35.0 29.0 36.0 96-97 33.26683603525752 35.0 33.0 35.0 29.0 35.0 98-99 33.367527825981256 35.0 33.0 35.0 29.5 35.0 100 32.290699099874 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 5.0 20 39.0 21 276.0 22 1077.0 23 3708.0 24 9711.0 25 21463.0 26 39292.0 27 63853.0 28 92329.0 29 126017.0 30 162961.0 31 205041.0 32 257610.0 33 329477.0 34 440192.0 35 607921.0 36 939023.0 37 1596176.0 38 2074358.0 39 1197986.0 40 46888.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.62674877258029 20.481278768362607 13.706494080328358 24.185478378728742 2 14.977596893572247 21.37373338483445 40.63573037097236 23.012939350620943 3 18.247751364421383 26.027643379275787 30.623828696158977 25.10077656014385 4 12.652030602642439 17.825310098669945 38.812632761839424 30.710026536848194 5 13.067243793823922 37.97174941466672 35.90268526019107 13.058321531318299 6 30.26343801675024 37.937009800490664 18.63819251759347 13.161359665165625 7 26.653415138998014 32.58321409595754 23.198272026759483 17.565098738284966 8 24.59253073950706 36.68760091559698 21.260802115050932 17.45906622984503 9 25.475530421202606 16.55142990515988 21.433088204415974 36.53995146922154 10-11 24.317723837108456 26.724701947134683 28.960933757982716 19.996640457774145 12-13 24.859492623918115 24.18675037931788 29.187197709668606 21.7665592870954 14-15 21.955332402722888 25.753049518245984 26.620378372509375 25.671239706521753 16-17 21.69650095309042 28.853181471824797 27.422225143572177 22.028092431512604 18-19 21.669130067888844 28.259950147697566 28.887872488631682 21.18304729578191 20-21 22.400736164341055 27.41409371999206 28.768382425664914 21.41678769000197 22-23 22.19896994275451 27.340825451930634 28.562713495765983 21.897491109548874 24-25 21.9692199935791 27.459094171126015 28.682133445458557 21.889552389836325 26-27 21.95994374264881 27.667500537539112 28.501840424281294 21.870715295530783 28-29 21.890838163845665 27.791000950922335 28.48122742260542 21.836933462626583 30-31 22.141945701036818 27.605080322948517 28.441847446142464 21.811126529872197 32-33 21.88884526844311 27.745685008832528 28.424811211473553 21.940658511250806 34-35 22.042209088185018 27.78057008465144 28.471299635409974 21.705921191753564 36-37 22.01014398664328 27.753772910220114 28.374718331064525 21.86136477207208 38-39 21.897463739761662 27.841085705574315 28.41470113488852 21.846749419775506 40-41 22.13407984603997 27.690234297938392 28.291817600129814 21.883868255891823 42-43 22.02006745511155 27.780824905701145 28.146258905187015 22.052848734000293 44-45 22.11281669708819 27.913380690148728 27.976064527213374 21.997738085549713 46-47 22.1134366858802 27.839083350167414 27.797680664599127 22.249799299353256 48-49 22.129672798604215 27.929476425036558 27.799373305728153 22.141477470631077 50-51 22.10512574312258 27.96982985314198 27.72819606373551 22.196848339999924 52-53 22.18957763053198 27.957099464759526 27.63834667228521 22.21497623242329 54-55 22.143928195129433 27.899919153775272 27.69605380708331 22.260098844011985 56-57 22.2137027297798 27.958803134338666 27.594723017450555 22.23277111843098 58-59 22.14749153467426 28.05907707137216 27.688097290177012 22.10533410377657 60-61 22.287371318764958 27.998038926792184 27.61055805704997 22.10403169739289 62-63 22.248342779196303 28.080106988167337 27.525533845764755 22.146016386871604 64-65 22.126904603869782 28.047466076953526 27.552027711597205 22.273601607579486 66-67 22.21772136628725 27.99247808652407 27.48955586065262 22.30024468653606 68-69 22.16156282125715 27.969195520505213 27.594476375476955 22.27476528276068 70-71 22.14327342073005 27.78815339804037 27.60275071588258 22.465822465346996 72-73 22.22742945850755 27.88868630599779 27.59409786771317 22.289786367781495 74-75 22.18775260879686 27.988426131685472 27.533487576279203 22.29033368323846 76-77 22.194705088976487 27.92243511221023 27.485064164061306 22.397795634751972 78-79 22.170138797933404 27.884688505190375 27.519091125724316 22.4260815711519 80-81 22.11862837555258 27.978450283872697 27.56406237916469 22.338858961410036 82-83 22.18166747572162 27.935594493008143 27.668120844005472 22.214617187264764 84-85 22.342325081494234 27.894356472698647 27.526801021709847 22.236517424097276 86-87 22.113851159546964 27.962237881373607 27.59912703005167 22.32478392902776 88-89 22.21103072470802 27.889386006858157 27.59093060961008 22.30865265882374 90-91 22.200690150591857 27.970573996958155 27.58034574756553 22.248390104884454 92-93 22.221300273933274 27.936952492778676 27.627836262219024 22.21391097106903 94-95 22.08538802031655 28.005378333774424 27.660430205531366 22.24880344037766 96-97 22.07929805037424 28.134636536882766 27.777311205732747 22.00875420701025 98-99 23.146639127356206 30.11203516774269 27.980238004815867 18.761087700085234 100 29.610134879660215 41.554109048085095 28.835756072254686 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1485.0 1 1358.5 2 1860.0 3 2634.5 4 3561.0 5 5931.0 6 8022.0 7 9236.5 8 9767.0 9 9264.5 10 8300.5 11 7488.5 12 8028.0 13 10608.0 14 16815.5 15 25481.0 16 32746.0 17 37234.0 18 39152.0 19 39050.0 20 37744.0 21 36325.0 22 36349.5 23 39454.5 24 46210.5 25 57117.5 26 71899.5 27 89118.5 28 107570.5 29 128524.5 30 149909.0 31 169637.0 32 189356.5 33 209937.5 34 229542.5 35 248027.0 36 267391.5 37 285372.5 38 300063.0 39 311504.0 40 322389.5 41 333638.0 42 342496.0 43 349057.0 44 357234.0 45 366019.0 46 371241.0 47 374248.0 48 372164.5 49 364175.5 50 355677.5 51 343915.5 52 327420.0 53 308275.5 54 286378.5 55 263472.0 56 241203.0 57 217784.0 58 193126.5 59 165227.5 60 136675.0 61 111473.0 62 89357.5 63 70323.5 64 53792.0 65 41070.0 66 31426.5 67 24423.0 68 18598.0 69 13605.5 70 9985.0 71 7255.0 72 5210.5 73 3689.5 74 2608.5 75 1811.0 76 1265.5 77 858.5 78 565.5 79 374.0 80 245.5 81 160.0 82 117.5 83 83.5 84 61.5 85 46.5 86 35.0 87 26.5 88 16.5 89 10.0 90 6.5 91 3.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008471889091286431 3 0.002446623142742202 4 4.3820115989412576E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.0955028997353144E-4 16-17 3.043063610375873E-4 18-19 0.0016736849857067302 20-21 6.695054509307891E-5 22-23 0.0017774194803105443 24-25 3.044224731245186E-4 26-27 0.0025764666993506394 28-29 0.006029013269986225 30-31 0.002926058025013459 32-33 0.002121036649919468 34-35 0.0022784048112027564 36-37 0.003099083526623173 38-39 0.0 40-41 6.571668148451456E-4 42-43 0.006199580918545488 44-45 0.0038881198047259645 46-47 5.952949846920875E-4 48-49 0.01654500107827309 50-51 0.011397848640992494 52-53 0.015369583965886432 54-55 0.012811851489893018 56-57 0.010918786055463137 58-59 0.01713776469835045 60-61 0.009012516327202316 62-63 0.019772011619108062 64-65 0.014439513365156916 66-67 0.03126655198832696 68-69 0.021518363752260395 70-71 0.02109731066635056 72-73 0.01942400712529432 74-75 0.009491329705123648 76-77 0.01238509320468086 78-79 0.013103810033962757 80-81 0.009929387890250493 82-83 0.004920182883932152 84-85 0.0031931549346900547 86-87 0.013962883734910288 88-89 0.0012099281592374523 90-91 2.5989736826192246E-4 92-93 0.0010581228653473403 94-95 0.002788581281387281 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 231.0 20-21 742.0 22-23 1487.0 24-25 3033.0 26-27 5378.0 28-29 12968.0 30-31 27405.0 32-33 34069.0 34-35 46928.0 36-37 69877.0 38-39 81006.0 40-41 80528.0 42-43 86281.0 44-45 97624.0 46-47 95964.0 48-49 89168.0 50-51 82015.0 52-53 78386.0 54-55 83724.0 56-57 86799.0 58-59 85027.0 60-61 82460.0 62-63 80040.0 64-65 82930.0 66-67 86862.0 68-69 86534.0 70-71 84584.0 72-73 79645.0 74-75 81069.0 76-77 81626.0 78-79 85313.0 80-81 86728.0 82-83 84111.0 84-85 84321.0 86-87 88998.0 88-89 94888.0 90-91 100039.0 92-93 107630.0 94-95 132726.0 96-97 294727.0 98-99 1678355.0 100-101 3483179.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.20488739770533 #Duplication Level Percentage of deduplicated Percentage of total 1 89.47027390525393 75.33834339633762 2 6.997365768204809 11.784247931844877 3 1.9212680001337124 4.853404668362214 4 0.7570106790041032 2.549759959376039 5 0.3380825765835202 1.4234102646170703 6 0.17291931143419828 0.8736390688923243 7 0.10074862307527409 0.5938468523069117 8 0.06598372130297037 0.4444921457918552 9 0.0427949508142846 0.3243189613056456 >10 0.13119011106193268 1.600515814567665 >50 0.0017397119252640595 0.09786595205310404 >100 5.753553191563149E-4 0.08967673670326055 >500 4.728588688340578E-5 0.026478247841429978 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.4344508883006984E-5 2 0.0 0.0 0.0 0.0 2.4344508883006984E-5 3 0.0 0.0 0.0 1.2172254441503492E-5 2.4344508883006984E-5 4 0.0 2.4344508883006984E-5 0.0 2.4344508883006984E-5 2.4344508883006984E-5 5 0.0 2.4344508883006984E-5 0.0 2.4344508883006984E-5 2.4344508883006984E-5 6 0.0 2.4344508883006984E-5 0.0 2.4344508883006984E-5 6.0861272207517464E-5 7 0.0 2.4344508883006984E-5 0.0 2.4344508883006984E-5 7.303352664902096E-5 8 0.0 2.4344508883006984E-5 0.0 3.651676332451048E-5 7.303352664902096E-5 9 0.0 8.520578109052445E-5 0.0 8.520578109052445E-5 1.2172254441503493E-4 10-11 0.0 8.520578109052445E-5 0.0 9.12919083112762E-5 1.2172254441503493E-4 12-13 0.0 9.737803553202794E-5 0.0 1.0346416275277968E-4 1.2172254441503493E-4 14-15 0.0 1.582393077395454E-4 0.0 1.2172254441503493E-4 1.6432543496029716E-4 16-17 0.0 1.704115621810489E-4 0.0 1.3389479885653842E-4 1.825838166225524E-4 18-19 0.0 2.0084219828480764E-4 0.0 1.582393077395454E-4 2.1301445272631111E-4 20-21 0.0 2.3127283438856635E-4 0.0 1.825838166225524E-4 2.4344508883006986E-4 22-23 0.0 2.6170347049232507E-4 0.0 2.6778959771307683E-4 2.6778959771307683E-4 24-25 0.0 2.6778959771307683E-4 0.0 3.4690925158284956E-4 2.9213410659608384E-4 26-27 0.0 2.6778959771307683E-4 0.0 4.4428728711487747E-4 3.164786154790908E-4 28-29 0.0 2.6778959771307683E-4 0.0 8.520578109052445E-4 3.2256474269984255E-4 30-31 0.0 2.9213410659608384E-4 0.0 0.002714412740455279 3.286508699205943E-4 32-33 1.2172254441503492E-5 2.9213410659608384E-4 0.0 0.006000921439661222 3.286508699205943E-4 34-35 1.2172254441503492E-5 3.3473699714134603E-4 0.0 0.009950818005929105 3.286508699205943E-4 36-37 1.2172254441503492E-5 3.773398876866083E-4 0.0 0.016353423842159945 3.286508699205943E-4 38-39 1.2172254441503492E-5 3.773398876866083E-4 0.0 0.026158174794791003 3.4690925158284956E-4 40-41 1.2172254441503492E-5 4.5037341433562923E-4 0.0 0.03632200725344642 3.5299537880360127E-4 42-43 1.2172254441503492E-5 4.56459541556381E-4 0.0 0.04525644201350998 3.5908150602435303E-4 44-45 1.2172254441503492E-5 4.929763048808914E-4 0.0 0.05543853285382766 3.773398876866083E-4 46-47 1.2172254441503492E-5 5.234069409846501E-4 0.0 0.06599796358183194 3.773398876866083E-4 48-49 1.2172254441503492E-5 5.294930682054019E-4 0.0 0.07683127003477004 3.773398876866083E-4 50-51 1.2172254441503492E-5 5.903543404129194E-4 0.0 0.08720811694615177 3.955982693488635E-4 52-53 1.2172254441503492E-5 5.964404676336711E-4 0.0 0.09710415980709411 4.199427782318705E-4 54-55 1.2172254441503492E-5 6.025265948544228E-4 0.0 0.1070062887952572 4.5645954155638095E-4 56-57 1.2172254441503492E-5 6.086127220751746E-4 0.0 0.11510692412607777 4.8689017766013966E-4 58-59 1.2172254441503492E-5 6.086127220751746E-4 0.0 0.12297020049528903 4.990624321016432E-4 60-61 1.2172254441503492E-5 6.268711037374299E-4 0.0 0.1303526728140609 5.173208137638984E-4 62-63 1.2172254441503492E-5 6.329572309581816E-4 0.0 0.13734563299070468 5.416653226469055E-4 64-65 1.2172254441503492E-5 7.059907576072025E-4 0.0 0.14495937814386511 5.477514498676572E-4 66-67 1.2172254441503492E-5 7.120768848279543E-4 0.0 0.15210449150102764 5.477514498676572E-4 68-69 1.2172254441503492E-5 7.303352664902096E-4 0.0 0.15922526034930717 5.477514498676572E-4 70-71 1.2172254441503492E-5 7.42507520931713E-4 1.2172254441503492E-5 0.16530530144283817 5.477514498676572E-4 72-73 1.2172254441503492E-5 7.42507520931713E-4 1.2172254441503492E-5 0.17065500726987898 6.086127220751746E-4 74-75 1.2172254441503492E-5 7.668520298147201E-4 1.2172254441503492E-5 0.17473879863500338 6.086127220751746E-4 76-77 1.2172254441503492E-5 7.790242842562235E-4 1.2172254441503492E-5 0.17847568074854497 6.086127220751746E-4 78-79 1.2172254441503492E-5 7.790242842562235E-4 1.2172254441503492E-5 0.18094664840017016 6.086127220751746E-4 80-81 1.2172254441503492E-5 7.790242842562235E-4 1.2172254441503492E-5 0.18171958655720563 6.451294853996851E-4 82-83 1.2172254441503492E-5 7.790242842562235E-4 1.2172254441503492E-5 0.18211518482655448 6.938185031656991E-4 84-85 1.2172254441503492E-5 7.790242842562235E-4 1.2172254441503492E-5 0.1822916825159563 7.059907576072025E-4 86-87 1.2172254441503492E-5 7.972826659184788E-4 1.2172254441503492E-5 0.18237688829704682 7.181630120487061E-4 88 1.2172254441503492E-5 8.520578109052445E-4 1.2172254441503492E-5 0.18237688829704682 7.181630120487061E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10065 0.0 36.382217 1 GTATCAA 16375 0.0 30.607983 1 ATCAACG 18275 0.0 26.617828 3 CAACGCA 18270 0.0 26.489468 5 TCAACGC 18405 0.0 26.38472 4 AACGCAG 19015 0.0 25.623737 6 TATCAAC 20010 0.0 24.70016 2 ACGCAGA 21960 0.0 22.168772 7 GTACATG 22385 0.0 21.80536 1 CGCAGAG 22385 0.0 21.711329 8 TACATGG 22200 0.0 21.397308 2 ACATGGG 22345 0.0 20.835794 3 CATGGGG 16765 0.0 19.668404 4 CTCGATA 960 0.0 18.094006 94 GCAGAGT 26665 0.0 18.057678 9 GAGTACT 15015 0.0 16.906462 12-13 AGAGTAC 23580 0.0 16.707424 10-11 ATGGGGG 11720 0.0 16.685043 5 CAGAGTA 25600 0.0 16.172144 10-11 GTACTTT 17040 0.0 14.970405 14-15 >>END_MODULE