##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140306_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8787200 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00145279497451 31.0 31.0 34.0 30.0 34.0 2 32.1109105289512 33.0 31.0 34.0 30.0 34.0 3 31.84724371813547 31.0 31.0 34.0 30.0 34.0 4 35.90574141933722 37.0 35.0 37.0 35.0 37.0 5 35.84401231336489 37.0 35.0 37.0 35.0 37.0 6 35.8853700837582 37.0 35.0 37.0 35.0 37.0 7 35.87131862254188 37.0 35.0 37.0 35.0 37.0 8 35.86695204388201 37.0 35.0 37.0 35.0 37.0 9 37.64399899854334 39.0 37.0 39.0 35.0 39.0 10-11 37.55539398215586 39.0 37.0 39.0 35.0 39.0 12-13 37.51041537691187 39.0 37.0 39.0 35.0 39.0 14-15 38.76680643435907 40.0 38.0 41.0 34.5 41.0 16-17 38.707517525491625 40.0 38.0 41.0 34.0 41.0 18-19 38.709256759832485 40.0 38.0 41.0 34.0 41.0 20-21 38.771947095979485 40.0 38.0 41.0 34.0 41.0 22-23 38.73145966668719 40.0 38.0 41.0 34.0 41.0 24-25 38.64543349163908 40.0 38.0 41.0 34.0 41.0 26-27 38.499457134271246 40.0 38.0 41.0 34.0 41.0 28-29 38.37530346265453 40.0 38.0 41.0 34.0 41.0 30-31 38.258185920951526 40.0 38.0 41.0 34.0 41.0 32-33 38.07439294905775 40.0 37.5 41.0 33.0 41.0 34-35 38.16140148726308 40.0 38.0 41.0 33.0 41.0 36-37 38.12137473891376 40.0 38.0 41.0 33.0 41.0 38-39 38.08821155664887 40.0 37.5 41.0 33.0 41.0 40-41 38.02906613392592 40.0 37.0 41.0 33.0 41.0 42-43 38.061425639863586 40.0 37.0 41.0 33.0 41.0 44-45 38.09109643408769 40.0 37.0 41.0 33.0 41.0 46-47 38.04028317061724 40.0 37.0 41.0 33.0 41.0 48-49 37.95560023079502 40.0 37.0 41.0 33.0 41.0 50-51 37.86283073772589 40.0 37.0 41.0 33.0 41.0 52-53 37.600548066081814 40.0 36.5 41.0 32.0 41.0 54-55 37.54925577096875 39.5 36.0 41.0 32.0 41.0 56-57 37.39031767874194 39.0 36.0 41.0 31.5 41.0 58-59 37.22303725837263 39.0 35.5 41.0 31.0 41.0 60-61 37.07952096719457 39.0 35.0 41.0 31.0 41.0 62-63 36.84333638118534 38.5 35.0 40.0 31.0 41.0 64-65 36.49298810009215 38.0 35.0 40.0 31.0 41.0 66-67 36.24989878737753 37.5 35.0 40.0 30.5 41.0 68-69 35.963692213560634 37.0 34.5 40.0 30.0 41.0 70-71 35.69503441493278 36.5 34.0 39.0 30.0 41.0 72-73 35.39862505005883 36.0 34.0 39.0 30.0 40.5 74-75 35.07454425756737 36.0 34.0 39.0 29.5 40.0 76-77 33.829211255563536 34.5 32.5 37.0 28.5 39.0 78-79 34.43683237979309 35.0 33.5 37.0 29.0 39.0 80-81 34.35896378234255 35.0 34.0 37.0 30.0 39.0 82-83 34.0813979309287 35.0 34.0 36.0 29.0 38.5 84-85 33.83897862268911 35.0 33.0 36.0 29.0 37.0 86-87 33.62971683015763 35.0 33.0 35.5 29.0 37.0 88-89 33.45418912347007 35.0 33.0 35.0 29.0 36.5 90-91 33.31749915988701 35.0 33.0 35.0 29.0 36.0 92-93 33.28488958366893 35.0 33.0 35.0 29.0 36.0 94-95 33.2727394503749 35.0 33.0 35.0 29.0 36.0 96-97 33.25439345385769 35.0 33.0 35.0 29.0 35.5 98-99 33.35598522019735 35.0 33.0 35.0 29.5 35.0 100 32.27656090587331 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 5.0 20 50.0 21 305.0 22 1224.0 23 4333.0 24 11267.0 25 24541.0 26 44705.0 27 71547.0 28 102924.0 29 139487.0 30 178746.0 31 223628.0 32 279062.0 33 354100.0 34 472913.0 35 649632.0 36 994042.0 37 1694380.0 38 2216030.0 39 1274052.0 40 50222.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.447321103423164 20.503004369992716 13.821342407137655 24.228332119446467 2 14.958016934806606 21.43337993123329 40.55742666692009 23.05117646704002 3 18.232174917696074 25.864464368954664 30.669946229314764 25.233414484034494 4 12.603947028212048 17.888072698735247 38.82964340729573 30.67833686575698 5 13.096663328477787 37.90140203932994 35.90383739985433 13.098097232337945 6 30.257419883466863 38.0289853423161 18.631224963583396 13.082369810633649 7 26.728286598689 32.522692097596504 23.09334031318281 17.655680990531682 8 24.60428805535324 36.7235182993445 21.23996267297888 17.432230972323378 9 25.45150901310998 16.626320101966495 21.38639156955572 36.535779315367805 10-11 24.268225373270212 26.764418699927166 29.03026561361981 19.93709031318281 12-13 24.819601238164605 24.254222050254917 29.183397441733433 21.742779269847052 14-15 21.89179486797229 25.812542224109315 26.633293842132343 25.662369065786052 16-17 21.651357813159873 29.002321677452642 27.353715600031453 21.992604909356025 18-19 21.666384812562846 28.28726858564169 28.873380970090995 21.172965631704464 20-21 22.381787505725903 27.461386792157576 28.76030306737644 21.39652263474008 22-23 22.137063947904945 27.470905673745747 28.578651213810822 21.813379164538485 24-25 21.93753876042351 27.558594945142705 28.675430210461094 21.828436083972687 26-27 21.942086595333336 27.764173238502917 28.518414135109033 21.77532603105472 28-29 21.837577126322277 27.81812374386703 28.541216322584123 21.80308280722657 30-31 22.118588430082823 27.665893639291355 28.50461920406506 21.710898726560753 32-33 21.835903821793476 27.78850696964496 28.472391472589464 21.903197735972103 34-35 21.9689506579487 27.85907007384601 28.516048894525888 21.655930373679404 36-37 22.0121347649163 27.790183795196327 28.412290055429118 21.78539138445825 38-39 21.88373458135702 27.812850453592556 28.5015725862944 21.801842378756024 40-41 22.07769455144107 27.711336080304182 28.375396262990236 21.83557310526451 42-43 21.998378699493728 27.776268401683225 28.256289755048137 21.96906314377491 44-45 22.039964004303513 27.919980801973555 28.109542616910776 21.93051257681216 46-47 22.10247185378774 27.833505071277354 27.869574925380718 22.194448149554187 48-49 22.07133444727712 27.93944266206843 27.904025976852527 22.085196913801923 50-51 22.039608860640673 28.041462107897715 27.810991293415118 22.107937738046495 52-53 22.111562612545665 28.00960819552755 27.72996866532702 22.14886052659977 54-55 22.13934104661873 27.939348319002537 27.73308229763106 22.188228336747667 56-57 22.17410148258792 28.01716983624501 27.696531821620802 22.112196859546273 58-59 22.080314673802174 28.14156944095491 27.749961501517394 22.028154383725518 60-61 22.22105513848133 28.085865073522303 27.680020165087747 22.01305962290862 62-63 22.136049585154208 28.182233952053252 27.597720701882295 22.083995760910245 64-65 22.101430164285908 28.133949713398998 27.63471494546289 22.1299051768522 66-67 22.179558471374683 28.110196705875374 27.556550544655146 22.1536942780948 68-69 22.114598058592197 28.05802608007796 27.671167463844625 22.156208397485212 70-71 22.07167864810231 27.883812837363198 27.73718204806807 22.307326466466424 72-73 22.171663942574956 27.942295539180005 27.673356442269387 22.212684075975652 74-75 22.04367444144103 28.03897204897572 27.655228858481735 22.262124651101516 76-77 22.134057125862235 27.984654884484094 27.553313977486155 22.327974012167516 78-79 22.119822566659224 28.017761119800998 27.56693749629927 22.295478817240504 80-81 22.073671276882237 28.017368858923557 27.640239078790447 22.26872078540376 82-83 22.09074843535407 28.000705939531677 27.749123538427412 22.159422086686845 84-85 22.231623343174764 28.016779236741442 27.60995390446083 22.141643515622967 86-87 22.072133656101446 27.998082519096418 27.711550039509824 22.21823378529231 88-89 22.172320103778574 27.9369462690006 27.686257388089047 22.20447623913178 90-91 22.121043126461853 28.066439119614234 27.656349280812776 22.156168473111137 92-93 22.175214247146833 28.0293415909437 27.67621040820188 22.119233753707583 94-95 22.002903826757958 28.07879047694169 27.759278715400594 22.159026980899764 96-97 22.020304244546896 28.221090701280747 27.839502911052243 21.91910214312011 98-99 23.106518507496496 30.171140616788605 28.06182955313889 18.660511322576014 100 29.41561116246113 41.636582463055454 28.947806374483413 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1542.0 1 1387.5 2 1909.5 3 2741.0 4 3571.5 5 5705.5 6 7698.5 7 9006.0 8 9719.0 9 9529.5 10 8812.0 11 8086.0 12 8634.0 13 11219.5 14 17387.5 15 25941.5 16 33373.0 17 38399.0 18 40845.0 19 40918.5 20 39601.0 21 38348.0 22 38648.0 23 42356.5 24 50425.5 25 62739.0 26 78739.5 27 96860.0 28 117165.5 29 140676.5 30 163997.5 31 186074.5 32 208366.0 33 229933.0 34 250650.5 35 270443.5 36 291069.0 37 310043.0 38 324493.0 39 335225.5 40 346091.5 41 357729.5 42 365324.5 43 371783.0 44 379854.5 45 386250.0 46 389406.0 47 391197.0 48 389377.5 49 382164.0 50 374364.0 51 362545.5 52 344138.5 53 324326.5 54 303674.0 55 281124.5 56 257762.0 57 232875.5 58 206036.5 59 176881.0 60 147290.5 61 120511.5 62 96547.0 63 75078.0 64 57406.5 65 44575.0 66 34379.0 67 26684.5 68 20520.5 69 14916.5 70 10814.0 71 8014.0 72 5801.0 73 3981.5 74 2689.0 75 1858.0 76 1273.5 77 846.0 78 570.5 79 370.5 80 234.0 81 147.5 82 112.5 83 90.0 84 70.5 85 54.0 86 39.5 87 27.5 88 19.0 89 12.5 90 8.5 91 7.0 92 5.0 93 3.0 94 1.0 95 0.0 96 0.0 97 0.0 98 1.0 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00774990895848507 3 0.0029133284777858705 4 3.641660597232338E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.1949198834668608E-4 16-17 2.1622359796067005E-4 18-19 0.0016842680262199564 20-21 6.25936735663673E-5 22-23 0.0016560421980039172 24-25 2.4476462693487865E-4 26-27 0.0024430056463612087 28-29 0.005494166665431809 30-31 0.0026269448243361995 32-33 0.001999923899743872 34-35 0.0021757032313164506 36-37 0.002815169523600331 38-39 0.0 40-41 6.670130412264823E-4 42-43 0.006094115564943594 44-45 0.003944148683549915 46-47 4.641544510579668E-4 48-49 0.015863267781233297 50-51 0.010555278298854321 52-53 0.014986457829649927 54-55 0.012664357902677541 56-57 0.011230024521149686 58-59 0.017431717756409674 60-61 0.008946596237330484 62-63 0.019918279446559918 64-65 0.014269368668221857 66-67 0.03077077250219987 68-69 0.02124228350584316 70-71 0.021710536696865117 72-73 0.01938251875153466 74-75 0.009641040588203136 76-77 0.01169464898500101 78-79 0.012611451479515172 80-81 0.010278153274313091 82-83 0.004594796830733171 84-85 0.003098127510275199 86-87 0.013661948526198685 88-89 0.001210119689594746 90-91 1.7000023638128107E-4 92-93 0.0011207510350465441 94-95 0.002581523807073224 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 229.0 20-21 692.0 22-23 1474.0 24-25 3570.0 26-27 5632.0 28-29 13540.0 30-31 28574.0 32-33 35758.0 34-35 48961.0 36-37 72875.0 38-39 84764.0 40-41 84415.0 42-43 90799.0 44-45 103246.0 46-47 100899.0 48-49 93677.0 50-51 86961.0 52-53 83866.0 54-55 90370.0 56-57 92850.0 58-59 91107.0 60-61 88586.0 62-63 86335.0 64-65 90060.0 66-67 93655.0 68-69 93302.0 70-71 90640.0 72-73 85568.0 74-75 86990.0 76-77 87075.0 78-79 92122.0 80-81 94007.0 82-83 90615.0 84-85 91135.0 86-87 96897.0 88-89 102781.0 90-91 107423.0 92-93 116688.0 94-95 143157.0 96-97 316976.0 98-99 1787458.0 100-101 3731471.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.26970746129419 #Duplication Level Percentage of deduplicated Percentage of total 1 90.01163275224528 76.75265592897401 2 6.883202577004679 11.738573402760306 3 1.7205612928554765 4.401352743330378 4 0.6276839798213305 2.140897173500229 5 0.2955607730328392 1.2601190326772083 6 0.1544642112359741 0.7902670863198636 7 0.09071515219650643 0.5414678143072017 8 0.050451216919815696 0.3441568406255183 9 0.039266521678397476 0.3013420334885567 >10 0.1246838893568029 1.5923606817101956 >50 0.0015753099992319938 0.08758350667694263 >100 1.8083499307201066E-4 0.0350415074551404 >500 2.1488660628023397E-5 0.01418224817446617 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1380189366351057E-5 2 0.0 2.2760378732702113E-5 0.0 1.1380189366351057E-5 1.1380189366351057E-5 3 0.0 2.2760378732702113E-5 0.0 2.2760378732702113E-5 1.1380189366351057E-5 4 0.0 5.690094683175528E-5 0.0 2.2760378732702113E-5 1.1380189366351057E-5 5 0.0 6.828113619810633E-5 0.0 2.2760378732702113E-5 1.1380189366351057E-5 6 0.0 6.828113619810633E-5 0.0 3.414056809905317E-5 2.2760378732702113E-5 7 0.0 6.828113619810633E-5 0.0 3.414056809905317E-5 2.2760378732702113E-5 8 0.0 6.828113619810633E-5 0.0 6.828113619810633E-5 2.2760378732702113E-5 9 0.0 1.9346321922796795E-4 0.0 1.1380189366351056E-4 3.414056809905317E-5 10-11 0.0 1.9346321922796795E-4 0.0 1.5932265112891477E-4 3.414056809905317E-5 12-13 0.0 1.9915331391114348E-4 0.0 2.0484340859431901E-4 3.414056809905317E-5 14-15 0.0 2.446740713765477E-4 0.0 2.4467407137654775E-4 3.414056809905317E-5 16-17 0.0 2.6174435542607427E-4 0.0 3.1295520757465404E-4 3.414056809905317E-5 18-19 0.0 3.0726511289147853E-4 0.0 3.755462490895848E-4 4.552075746540423E-5 20-21 0.0 3.8123634377276033E-4 0.0 3.9830662782228696E-4 6.259104151493081E-5 22-23 0.0 4.267571012381646E-4 0.0 4.6089766933721775E-4 8.535142024763292E-5 24-25 0.0 4.893481427530954E-4 0.0 5.462490895848507E-4 1.0811179898033503E-4 26-27 0.0 5.234887108521485E-4 0.0 6.316005098324837E-4 1.194919883466861E-4 28-29 0.0 5.348689002184995E-4 0.0 0.0010299071376547707 1.2518208302986163E-4 30-31 0.0 6.600509832483612E-4 0.0 0.0027141751638747273 1.422523670793882E-4 32-33 0.0 6.600509832483612E-4 0.0 0.005826656955571741 1.7070284049526584E-4 34-35 0.0 8.421340131099782E-4 0.0 0.010008876547705754 1.9346321922796795E-4 36-37 0.0 0.001024217042971595 0.0 0.016148488710852147 1.9346321922796795E-4 38-39 0.0 0.0010811179898033503 0.0 0.025246950109249818 2.1053350327749455E-4 40-41 0.0 0.0011778495994173343 0.0 0.03543790968681719 2.1622359796067005E-4 42-43 0.0 0.0012461307356154408 0.0 0.044604652221412966 2.1622359796067005E-4 44-45 0.0 0.0013428623452294247 0.0 0.05454524763292061 2.1622359796067005E-4 46-47 0.0 0.001411143481427531 0.0 0.06550436999271668 2.219136926438456E-4 48-49 0.0 0.0014168335761107066 0.0 0.07606518572469045 2.2760378732702112E-4 50-51 0.0 0.001519255280407866 0.0 0.08630166605972323 2.2760378732702112E-4 52-53 0.0 0.0015306354697742172 0.0 0.09674867989803351 2.5036416605972325E-4 54-55 0.0 0.0015477057538237436 0.0 0.10581869082301529 2.7312454479242533E-4 56-57 5.690094683175528E-6 0.0015590859431900946 0.0 0.11385310451565914 2.7312454479242533E-4 58-59 1.1380189366351057E-5 0.0015590859431900946 0.0 0.12203546067006554 2.788146394756009E-4 60-61 1.1380189366351057E-5 0.0015761562272396212 0.0 0.1300698743627094 2.845047341587764E-4 62-63 1.1380189366351057E-5 0.0016046067006554989 0.0 0.13735888565185725 2.845047341587764E-4 64-65 1.1380189366351057E-5 0.0016615076474872541 0.0 0.1443690823015295 2.845047341587764E-4 66-67 1.1380189366351057E-5 0.0016728878368536051 0.0 0.15195966860888566 3.0726511289147853E-4 68-69 1.1380189366351057E-5 0.0017127184996358338 0.0 0.1589755553532411 3.1864530225782955E-4 70-71 1.1380189366351057E-5 0.0017297887836853604 0.0 0.1648989439184268 3.300254916241806E-4 72-73 1.1380189366351057E-5 0.0017297887836853604 0.0 0.16979811544064094 3.414056809905317E-4 74-75 1.1380189366351057E-5 0.0017809996358339403 0.0 0.1736161689730517 3.414056809905317E-4 76-77 1.1380189366351057E-5 0.001866351056081573 0.0 0.17740008193736345 3.414056809905317E-4 78-79 1.1380189366351057E-5 0.0018891114348142753 0.0 0.17963059905316825 3.414056809905317E-4 80-81 1.7070284049526587E-5 0.0018948015294974509 0.0 0.18039307174071378 3.584759650400583E-4 82-83 2.2760378732702113E-5 0.001917561908230153 0.0 0.18096208120903132 3.755462490895848E-4 84-85 2.2760378732702113E-5 0.0019346321922796795 0.0 0.18121813546977422 3.755462490895848E-4 86-87 2.2760378732702113E-5 0.0019346321922796795 0.0 0.18130348689002185 3.8123634377276033E-4 88 2.2760378732702113E-5 0.0019346321922796795 0.0 0.1813205571740714 3.869264384559359E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9075 0.0 43.092144 1 GTATCAA 15515 0.0 33.0441 1 ATCAACG 17580 0.0 28.01922 3 TCAACGC 17625 0.0 27.970276 4 CAACGCA 17850 0.0 27.548895 5 AACGCAG 18565 0.0 26.532003 6 TATCAAC 19390 0.0 25.891312 2 ACGCAGA 21880 0.0 22.512188 7 CGCAGAG 22325 0.0 22.063583 8 GTACATG 22010 0.0 20.66976 1 TACATGG 22075 0.0 19.996754 2 ACATGGG 22345 0.0 19.258907 3 TATACCG 600 0.0 18.425186 5 GCAGAGT 26785 0.0 18.313316 9 GAGTACT 14970 0.0 17.327576 12-13 AGAGTAC 23930 0.0 16.716822 10-11 CATGGGG 16430 0.0 16.67201 4 CAGAGTA 26100 0.0 16.621197 10-11 GTACTTT 17075 0.0 15.132005 14-15 GTGGTAT 5345 0.0 14.709399 1 >>END_MODULE