##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140304_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8388913 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03075785861648 33.0 31.0 34.0 30.0 34.0 2 32.13933116245216 33.0 31.0 34.0 30.0 34.0 3 31.8748218034923 31.0 31.0 34.0 30.0 34.0 4 35.9264795093238 37.0 35.0 37.0 35.0 37.0 5 35.868320484429866 37.0 35.0 37.0 35.0 37.0 6 35.91123081142932 37.0 35.0 37.0 35.0 37.0 7 35.896671594996874 37.0 35.0 37.0 35.0 37.0 8 35.89410022490399 37.0 35.0 37.0 35.0 37.0 9 37.674366273675744 39.0 37.0 39.0 35.0 39.0 10-11 37.586470321005834 39.0 37.0 39.0 35.0 39.0 12-13 37.541027127114084 39.0 37.0 39.0 35.0 39.0 14-15 38.80430486047477 40.0 38.0 41.0 35.0 41.0 16-17 38.74563516155192 40.0 38.0 41.0 34.0 41.0 18-19 38.74741030214523 40.0 38.0 41.0 34.0 41.0 20-21 38.80870852326484 40.0 38.0 41.0 34.5 41.0 22-23 38.76851625458479 40.0 38.0 41.0 34.0 41.0 24-25 38.67859130294145 40.0 38.0 41.0 34.0 41.0 26-27 38.53394678688784 40.0 38.0 41.0 34.0 41.0 28-29 38.409560454640555 40.0 38.0 41.0 34.0 41.0 30-31 38.292004372019505 40.0 38.0 41.0 34.0 41.0 32-33 38.10635735225471 40.0 37.5 41.0 33.5 41.0 34-35 38.19497719800035 40.0 38.0 41.0 33.5 41.0 36-37 38.152673708184594 40.0 38.0 41.0 33.0 41.0 38-39 38.11845369579798 40.0 38.0 41.0 33.0 41.0 40-41 38.05664385552397 40.0 37.0 41.0 33.0 41.0 42-43 38.08302674215062 40.0 37.0 41.0 33.0 41.0 44-45 38.10896735636565 40.0 37.5 41.0 33.0 41.0 46-47 38.054049616296 40.0 37.0 41.0 33.0 41.0 48-49 37.963629988532915 40.0 37.0 41.0 33.0 41.0 50-51 37.870279396824266 40.0 37.0 41.0 33.0 41.0 52-53 37.60742621979776 40.0 36.5 41.0 32.0 41.0 54-55 37.55056888329008 39.5 36.0 41.0 32.0 41.0 56-57 37.387075596644806 39.0 36.0 41.0 32.0 41.0 58-59 37.2190602836807 39.0 35.5 41.0 31.0 41.0 60-61 37.06957943598759 39.0 35.0 41.0 31.0 41.0 62-63 36.824375621370095 38.5 35.0 40.0 31.0 41.0 64-65 36.46906547276898 38.0 35.0 40.0 31.0 41.0 66-67 36.22356221805754 37.5 35.0 40.0 30.5 41.0 68-69 35.93435377110464 37.0 34.0 40.0 30.0 41.0 70-71 35.66451661342769 36.5 34.0 39.0 30.0 41.0 72-73 35.36728484067659 36.0 34.0 39.0 30.0 40.5 74-75 35.0451219604209 35.5 34.0 38.5 30.0 40.0 76-77 33.806338193394 34.5 32.5 36.5 28.5 39.0 78-79 34.4142684845708 35.0 33.5 37.0 29.0 39.0 80-81 34.33985116893504 35.0 34.0 37.0 30.0 39.0 82-83 34.063996782232486 35.0 34.0 36.0 29.0 38.5 84-85 33.82637542765956 35.0 33.0 36.0 29.0 37.0 86-87 33.62337564715193 35.0 33.0 35.5 29.0 37.0 88-89 33.452274945459166 35.0 33.0 35.0 29.0 36.5 90-91 33.31439559071933 35.0 33.0 35.0 29.0 36.0 92-93 33.283808273362155 35.0 33.0 35.0 29.0 36.0 94-95 33.2747554819524 35.0 33.0 35.0 29.0 36.0 96-97 33.2621318289154 35.0 33.0 35.0 29.0 35.0 98-99 33.360238922006694 35.0 33.0 35.0 29.5 35.0 100 32.236178385779695 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 10.0 20 51.0 21 245.0 22 1203.0 23 4051.0 24 10632.0 25 22866.0 26 42048.0 27 67923.0 28 97761.0 29 132101.0 30 169614.0 31 212370.0 32 265725.0 33 336900.0 34 452305.0 35 623406.0 36 962121.0 37 1652776.0 38 2119492.0 39 1169036.0 40 46273.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.799575225061936 20.276619867198526 13.699259963716395 24.22454494402314 2 15.00496889197047 21.23972424080147 40.57611727348028 23.17918959374778 3 18.326434958684256 25.87193878043666 30.461820562945995 25.339805697933087 4 12.730287108785493 17.600462803360067 38.689259443100596 30.97999064475384 5 13.12451327126649 37.98566035909539 35.78326536465452 13.106561004983602 6 30.589195525093654 37.738655771015864 18.45516814872201 13.21698055516847 7 26.928697436723926 32.478355658236055 23.01043055280225 17.58251635223777 8 24.845483556689647 36.647787383180635 20.99473435950522 17.511994700624502 9 25.644323644791644 16.563719280435976 21.273066009863257 36.51889106490913 10-11 24.511626238107368 26.632806896435806 28.802748341769668 20.052818523687158 12-13 25.02841548124292 24.099528747049824 29.075411796498546 21.796643975208706 14-15 22.074607865797915 25.649092771508446 26.524314686750984 25.75198467594265 16-17 21.779378545873087 28.782415121810818 27.26623708656551 22.171969245750585 18-19 21.814997252572535 28.17551683613656 28.797527976881916 21.211957934408993 20-21 22.561865246802356 27.291733597819416 28.667697033889468 21.47870412148876 22-23 22.334517747706325 27.238371186725495 28.49136821290297 21.935742852665207 24-25 22.1214777400559 27.34868855253556 28.62360696661728 21.906226740791254 26-27 22.095772413011446 27.52027893603441 28.440207114181238 21.943741536772908 28-29 21.99099820041615 27.713143528826027 28.415652827471877 21.880205443285945 30-31 22.267738487410554 27.47914156754382 28.37570196820176 21.87741797684387 32-33 22.047262274384437 27.573550114659735 28.351445586987122 22.027742023968706 34-35 22.137593989307348 27.62815508873785 28.41421245460053 21.820038467354276 36-37 22.1635819067094 27.607929274114255 28.29068719144961 21.937801627726735 38-39 22.035771645949925 27.703538947676247 28.350359534889424 21.9103298714844 40-41 22.224365689953032 27.552179337483867 28.222818085739735 22.000636886823365 42-43 22.16572456291938 27.678860299756785 28.03866183635898 22.116753300964856 44-45 22.19504943830192 27.74337892376077 27.967143474369365 22.094428163567947 46-47 22.208814363275184 27.736386644833367 27.752986246823646 22.301812745067807 48-49 22.19217428264172 27.80254081965779 27.728757615210288 22.2765272824902 50-51 22.15136845843815 27.905628753575783 27.632453335640548 22.31054945234552 52-53 22.28372003556698 27.820298702874474 27.555374238154627 22.340607023403923 54-55 22.262568214973825 27.7576584574325 27.604838386802932 22.37493494079074 56-57 22.319428653537255 27.828208338473086 27.541403245792917 22.31095976219674 58-59 22.200389936765678 27.999716670395458 27.578104899741707 22.221788493097154 60-61 22.334351621173663 27.897347227579843 27.574027099814213 22.19427405143228 62-63 22.339529807990818 27.97014635463676 27.430737904727543 22.25958593264488 64-65 22.24459299808314 27.919772642857538 27.510419847998236 22.325214511061088 66-67 22.286811542540878 27.906294719936298 27.44026083517105 22.36663290235178 68-69 22.219295511523406 27.892051224871413 27.536688690542753 22.351964573062435 70-71 22.198924732352676 27.72808928015906 27.542833617407492 22.53015237008077 72-73 22.279448062025068 27.769861222504595 27.53328973292658 22.417400982543757 74-75 22.165489811756466 27.913361386651726 27.48900262614427 22.43214617544754 76-77 22.255021337520372 27.85883318279858 27.416150439166042 22.469995040515 78-79 22.19811820517166 27.783928878409075 27.47934652603447 22.538606390384796 80-81 22.204778469142273 27.886162671631805 27.499703377235562 22.409355481990364 82-83 22.216477057971876 27.873457127090322 27.609152594886716 22.300913220051086 84-85 22.389091250347157 27.843156434361287 27.47831034331086 22.289441971980697 86-87 22.195702884770576 27.902980191867027 27.517614441925573 22.38370248143682 88-89 22.27858924980633 27.812474929852655 27.5097645285005 22.399171291840517 90-91 22.27776117299683 27.898232415294487 27.520463718184118 22.303542693524562 92-93 22.313357530015665 27.86408085781098 27.538062044788912 22.284499567384444 94-95 22.092356359325834 27.971079119733982 27.630336274949524 22.30622824599066 96-97 22.140248036105614 28.09945698821823 27.69910520777809 22.061189767898064 98-99 23.215829609304052 30.050301757034877 27.908743730521508 18.825124903139567 100 22.246922300081163 31.04405329103755 21.56864081419387 25.140383594687414 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1493.0 1 1379.5 2 1981.5 3 2869.5 4 3744.5 5 5909.5 6 7875.5 7 9215.0 8 10078.0 9 9867.0 10 9058.0 11 8177.5 12 8548.5 13 11038.5 14 16974.0 15 25228.0 16 32324.0 17 36961.0 18 38877.0 19 38304.0 20 36498.5 21 34823.0 22 34634.0 23 37519.0 24 44124.0 25 54318.5 26 68140.0 27 84249.0 28 101834.0 29 122308.5 30 143250.0 31 163937.5 32 185085.5 33 204919.5 34 224434.0 35 243470.5 36 264691.0 37 285656.5 38 299747.0 39 309846.0 40 320238.5 41 329158.0 42 336364.5 43 344044.0 44 351894.5 45 361325.0 46 367729.0 47 370018.0 48 369920.5 49 365023.0 50 357310.5 51 346668.5 52 331779.0 53 314390.0 54 296759.0 55 275861.5 56 253983.5 57 230719.0 58 205285.0 59 178768.0 60 149097.0 61 121714.5 62 98153.0 63 77494.5 64 59693.0 65 45470.0 66 34744.5 67 26764.0 68 20717.5 69 15370.0 70 11164.5 71 8210.5 72 6022.5 73 4211.0 74 2867.0 75 1922.0 76 1250.0 77 837.5 78 563.5 79 359.5 80 235.5 81 159.5 82 120.0 83 86.0 84 58.5 85 40.5 86 28.0 87 20.0 88 13.5 89 12.0 90 11.5 91 9.0 92 7.0 93 3.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008642359266331645 3 0.002646350009828449 4 4.410583349714081E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.4304594647721343E-4 16-17 2.80131645184543E-4 18-19 0.0018655575519736587 20-21 6.55651678727578E-5 22-23 0.0014783352061893127 24-25 2.2657320959017617E-4 26-27 0.0024576309201465607 28-29 0.005748547432202061 30-31 0.002660824890396437 32-33 0.002080917340326175 34-35 0.002173011569510878 36-37 0.002614656468941543 38-39 0.0 40-41 7.50720861246663E-4 42-43 0.006346113818731146 44-45 0.004027449136046291 46-47 5.964653211255073E-4 48-49 0.016137671858184578 50-51 0.011180269392611762 52-53 0.015066262733612229 54-55 0.01324666582016811 56-57 0.011678481374695045 58-59 0.01787741813556183 60-61 0.00922728941088853 62-63 0.020346718597135938 64-65 0.015404392216663372 66-67 0.03194239925834206 68-69 0.022624554294848005 70-71 0.022429319362615743 72-73 0.020855998907647787 74-75 0.010438103162633819 76-77 0.012854042758157165 78-79 0.013043881078814297 80-81 0.010365273152753077 82-83 0.0050121913723583595 84-85 0.0035488524146606187 86-87 0.014140453679867859 88-89 0.001390211065932886 90-91 2.8267307968745335E-4 92-93 0.0012947833180117308 94-95 0.0032116012707235696 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 197.0 20-21 636.0 22-23 1363.0 24-25 3682.0 26-27 4843.0 28-29 10733.0 30-31 23207.0 32-33 28933.0 34-35 40277.0 36-37 60327.0 38-39 71650.0 40-41 72207.0 42-43 78352.0 44-45 90237.0 46-47 88468.0 48-49 84075.0 50-51 78353.0 52-53 75029.0 54-55 80240.0 56-57 83305.0 58-59 82314.0 60-61 81164.0 62-63 78830.0 64-65 81754.0 66-67 85784.0 68-69 86329.0 70-71 85307.0 72-73 80950.0 74-75 82189.0 76-77 83734.0 78-79 88225.0 80-81 89724.0 82-83 87255.0 84-85 87135.0 86-87 93442.0 88-89 98778.0 90-91 104236.0 92-93 112069.0 94-95 138837.0 96-97 308940.0 98-99 533713.0 100-101 4842090.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.08359415611449 #Duplication Level Percentage of deduplicated Percentage of total 1 89.18954379922938 74.993774037834 2 7.268417764917241 12.22309379004788 3 1.9378762909902778 4.888308107291487 4 0.7537502535239741 2.535121216495129 5 0.3264213669649429 1.3723340871882186 6 0.18091386738984855 0.9127132921692683 7 0.10688826390460489 0.6291284581544521 8 0.07185251732920202 0.48332943249630445 9 0.03897537369367773 0.29494705533678883 >10 0.12351160771869468 1.507374403175483 >50 0.0015329011059314064 0.08580746244599151 >100 2.465827141510823E-4 0.037630800406919976 >500 6.941051810462603E-5 0.03643785695816053 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 1.1920495539767787E-5 5.960247769883893E-5 0.0 0.0 0.0 3 1.1920495539767787E-5 7.152297323860671E-5 0.0 0.0 0.0 4 1.1920495539767787E-5 1.0728445985791008E-4 0.0 1.1920495539767787E-5 0.0 5 1.1920495539767787E-5 1.1920495539767786E-4 0.0 1.1920495539767787E-5 0.0 6 5.960247769883893E-5 1.1920495539767786E-4 0.0 1.1920495539767787E-5 0.0 7 5.960247769883893E-5 1.1920495539767786E-4 0.0 1.1920495539767787E-5 0.0 8 7.152297323860671E-5 1.1920495539767786E-4 0.0 2.3840991079535573E-5 0.0 9 7.152297323860671E-5 1.788074330965168E-4 0.0 9.53639643181423E-5 0.0 10-11 7.152297323860671E-5 1.788074330965168E-4 0.0 9.53639643181423E-5 0.0 12-13 7.152297323860671E-5 1.788074330965168E-4 0.0 1.1920495539767786E-4 0.0 14-15 8.344346877837451E-5 2.4437015856523965E-4 0.0 1.1920495539767786E-4 5.960247769883893E-6 16-17 1.6688693755674902E-4 2.5033040633512353E-4 0.0 1.2516520316756177E-4 1.1920495539767787E-5 18-19 1.6688693755674902E-4 2.80131645184543E-4 0.0 1.3112545093744564E-4 1.7880743309651682E-5 20-21 1.728471853266329E-4 3.099328840339624E-4 0.0 1.6092668978686512E-4 2.3840991079535573E-5 22-23 1.907279286362846E-4 3.576148661930336E-4 0.0 2.3244966302547184E-4 3.5761486619303364E-5 24-25 2.0264842417605237E-4 3.814558572725692E-4 0.0 2.622509018748913E-4 4.768198215907115E-5 26-27 2.1456891971582015E-4 4.0529684835210474E-4 0.0 3.1589313180384635E-4 4.768198215907115E-5 28-29 2.3840991079535572E-4 4.112570961219886E-4 0.0 7.450309712354866E-4 5.364222992895504E-5 30-31 2.3840991079535572E-4 4.529788305111759E-4 0.0 0.0022470134092462276 5.960247769883893E-5 32-33 2.3840991079535572E-4 4.7681982159071144E-4 0.0 0.00511389258656038 8.344346877837451E-5 34-35 2.3840991079535572E-4 5.364222992895503E-4 0.0 0.00866620025741118 9.53639643181423E-5 36-37 2.5033040633512353E-4 5.960247769883893E-4 0.0 0.014113866719085058 9.53639643181423E-5 38-39 2.741713974146591E-4 5.960247769883893E-4 0.0 0.02227344591605611 9.53639643181423E-5 40-41 2.741713974146591E-4 6.317862636076927E-4 0.0 0.030671435023822517 1.0728445985791008E-4 42-43 2.9801238849419466E-4 6.496670069173443E-4 0.0 0.03798465903747005 1.0728445985791008E-4 44-45 2.9801238849419466E-4 7.211899801559511E-4 0.0 0.046835626975747634 1.0728445985791008E-4 46-47 3.099328840339624E-4 7.629117145451384E-4 0.0 0.05618129547892557 1.0728445985791008E-4 48-49 3.3377387511349804E-4 7.629117145451384E-4 0.0 0.0660514657858533 1.0728445985791008E-4 50-51 3.456943706532658E-4 8.403949355536289E-4 0.0 0.07601700005709917 1.0728445985791008E-4 52-53 3.6953536173280136E-4 8.463551833235129E-4 0.0 0.08546995302013502 1.1324470762779397E-4 54-55 3.754956095026853E-4 8.642359266331646E-4 0.0 0.09449972839150914 1.1920495539767786E-4 56-57 3.8741610504245305E-4 9.059576610223518E-4 0.0 0.10220036851019912 1.2516520316756177E-4 58-59 3.993366005822208E-4 9.178781565621195E-4 0.0 0.10974604218687212 1.3112545093744564E-4 60-61 4.4105833497140806E-4 9.238384043320034E-4 0.0 0.11719635189922699 1.3112545093744564E-4 62-63 4.887403171304792E-4 9.357588998717712E-4 0.0 0.12413408030337184 1.4304594647721343E-4 64-65 5.006608126702471E-4 0.0010490036074995652 0.0 0.1305175056649175 1.4304594647721343E-4 66-67 5.245018037497826E-4 0.0010490036074995652 0.0 0.13750291605122142 1.4304594647721343E-4 68-69 5.245018037497826E-4 0.0010609241030393331 0.0 0.14436912148212766 1.4304594647721343E-4 70-71 5.423825470594343E-4 0.0010907253418887524 0.0 0.15068698411820458 1.549664420169812E-4 72-73 5.841042814486216E-4 0.0011086060851984041 0.0 0.1556757115015974 1.6688693755674902E-4 74-75 5.960247769883893E-4 0.0011443675718177074 0.0 0.15964523651634008 1.6688693755674902E-4 76-77 6.13905520298041E-4 0.0011920495539767787 0.0 0.1633346298858982 1.6688693755674902E-4 78-79 6.198657680679248E-4 0.001227811040596082 0.0 0.16590349667471815 1.6688693755674902E-4 80-81 6.198657680679248E-4 0.001227811040596082 0.0 0.16656508417717528 1.728471853266329E-4 82-83 6.198657680679248E-4 0.001227811040596082 0.0 0.16702402325545634 1.788074330965168E-4 84-85 6.198657680679248E-4 0.001233771288365966 0.0 0.16720879093632274 1.788074330965168E-4 86-87 6.258260158378088E-4 0.0012516520316756177 0.0 0.16728627415733122 1.788074330965168E-4 88 6.317862636076927E-4 0.0012993340138346887 0.0 0.1672922344051011 1.788074330965168E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9180 0.0 43.64427 1 GTATCAA 15935 0.0 33.957413 1 ATCAACG 18310 0.0 28.712614 3 TCAACGC 18390 0.0 28.632254 4 CAACGCA 18600 0.0 28.264103 5 TATCAAC 19370 0.0 27.400784 2 AACGCAG 19385 0.0 27.247768 6 CGCAGAG 22830 0.0 23.081697 8 ACGCAGA 22830 0.0 23.063553 7 GTACATG 23420 0.0 21.60092 1 TACATGG 23440 0.0 21.03453 2 ACATGGG 24020 0.0 20.007114 3 GCAGAGT 27935 0.0 18.655998 9 CATGGGG 18685 0.0 18.557695 4 ACCGAAC 1300 0.0 18.164274 8 GAGTACT 15025 0.0 17.578037 12-13 CAGAGTA 26700 0.0 17.067425 10-11 AGAGTAC 24830 0.0 16.384052 10-11 GTGGTAT 5345 0.0 16.123493 1 ACGGGCG 875 0.0 16.097462 5 >>END_MODULE