##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140303_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7963802 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.024894390895206 33.0 31.0 34.0 30.0 34.0 2 32.13285425730072 33.0 31.0 34.0 30.0 34.0 3 31.869279648087684 31.0 31.0 34.0 30.0 34.0 4 35.92180531359268 37.0 35.0 37.0 35.0 37.0 5 35.862491684248305 37.0 35.0 37.0 35.0 37.0 6 35.9060108475826 37.0 35.0 37.0 35.0 37.0 7 35.890790479220854 37.0 35.0 37.0 35.0 37.0 8 35.88938524589135 37.0 35.0 37.0 35.0 37.0 9 37.67110671510919 39.0 37.0 39.0 35.0 39.0 10-11 37.58322770957892 39.0 37.0 39.0 35.0 39.0 12-13 37.53900888043174 39.0 37.0 39.0 35.0 39.0 14-15 38.804691653559445 40.0 38.0 41.0 35.0 41.0 16-17 38.7467672476036 40.0 38.0 41.0 34.0 41.0 18-19 38.74480449162347 40.0 38.0 41.0 34.0 41.0 20-21 38.806919652009796 40.0 38.0 41.0 34.5 41.0 22-23 38.76752219581306 40.0 38.0 41.0 34.0 41.0 24-25 38.677906441156395 40.0 38.0 41.0 34.0 41.0 26-27 38.53643183736564 40.0 38.0 41.0 34.0 41.0 28-29 38.41413467485401 40.0 38.0 41.0 34.0 41.0 30-31 38.29669455515979 40.0 38.0 41.0 34.0 41.0 32-33 38.11298831690212 40.0 37.5 41.0 33.5 41.0 34-35 38.20121823148486 40.0 38.0 41.0 34.0 41.0 36-37 38.1629638209058 40.0 38.0 41.0 33.0 41.0 38-39 38.13010676455843 40.0 38.0 41.0 33.0 41.0 40-41 38.07155228149864 40.0 37.5 41.0 33.0 41.0 42-43 38.097762108753855 40.0 38.0 41.0 33.0 41.0 44-45 38.12546778205281 40.0 38.0 41.0 33.0 41.0 46-47 38.07050359710102 40.0 37.0 41.0 33.0 41.0 48-49 37.982785816623625 40.0 37.0 41.0 33.0 41.0 50-51 37.89121602279393 40.0 37.0 41.0 33.0 41.0 52-53 37.630436297363794 40.0 37.0 41.0 32.0 41.0 54-55 37.57823258020815 39.5 36.0 41.0 32.0 41.0 56-57 37.4165499737531 39.0 36.0 41.0 32.0 41.0 58-59 37.24919113529507 39.0 36.0 41.0 31.0 41.0 60-61 37.102023391673775 39.0 35.0 41.0 31.0 41.0 62-63 36.863373338387795 38.5 35.0 40.0 31.0 41.0 64-65 36.50817814884796 38.0 35.0 40.0 31.0 41.0 66-67 36.26394583072455 37.5 35.0 40.0 31.0 41.0 68-69 35.973858561501174 37.0 34.5 40.0 30.0 41.0 70-71 35.69745258840593 36.5 34.0 39.0 30.0 41.0 72-73 35.402500600272965 36.0 34.0 39.0 30.0 40.5 74-75 35.07825659414182 36.0 34.0 38.5 30.0 40.0 76-77 33.832440184334345 34.5 32.5 37.0 28.5 39.0 78-79 34.4358494188744 35.0 34.0 37.0 29.0 39.0 80-81 34.35868152532639 35.0 34.0 37.0 30.0 39.0 82-83 34.08033180251681 35.0 34.0 36.0 29.0 38.5 84-85 33.84045564319168 35.0 33.5 36.0 29.0 37.0 86-87 33.6356904117724 35.0 33.0 35.5 29.0 37.0 88-89 33.461987441374895 35.0 33.0 35.0 29.0 36.5 90-91 33.325604453437805 35.0 33.0 35.0 29.0 36.0 92-93 33.29497669589533 35.0 33.0 35.0 29.0 36.0 94-95 33.285903718324 35.0 33.0 35.0 29.0 36.0 96-97 33.26606755113656 35.0 33.0 35.0 29.0 35.0 98-99 33.36506758573597 35.0 33.0 35.0 29.5 35.0 100 32.24908419483346 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 8.0 20 36.0 21 215.0 22 1092.0 23 3702.0 24 9833.0 25 21628.0 26 39595.0 27 63525.0 28 92536.0 29 124132.0 30 159625.0 31 200038.0 32 249431.0 33 315321.0 34 422554.0 35 584121.0 36 899897.0 37 1544881.0 38 2022843.0 39 1161817.0 40 46971.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.70641108355029 20.351636065286407 13.631416250680264 24.310536600483033 2 15.009738608465243 21.283587525037202 40.57596554127449 23.13070832522306 3 18.28412382888579 25.82689673098874 30.48033733614447 25.408642103981006 4 12.679035673529743 17.691908963788034 38.69266287750936 30.936392485172863 5 13.131529387596528 37.906128253816455 35.88051285052039 13.081829508066626 6 30.52803171148655 37.829368434825476 18.503963307977774 13.138636545710202 7 26.919504025840922 32.401295260731 23.081588417190684 17.5976122962374 8 24.67378018690068 36.72723154091476 21.143129876910553 17.455858395274014 9 25.558520917521555 16.53884664636313 21.308113888316157 36.594518547799154 10-11 24.360763866304058 26.71436331541141 28.94577238359266 19.979100434691873 12-13 24.910469898674027 24.140485913637733 29.129924375317216 21.819119812371028 14-15 21.95733162761303 25.708930583436956 26.562004201265456 25.771733587684558 16-17 21.746024152119855 28.876049078746966 27.31921163498759 22.058715134145586 18-19 21.762940215192458 28.25624065913395 28.752199678991904 21.22861944668169 20-21 22.481947672359798 27.39511667961739 28.678908914102763 21.444026733920044 22-23 22.256458964322746 27.335431618423566 28.462041673589578 21.94606774366411 24-25 22.055622176871996 27.395286845066646 28.579077227706357 21.970013750355 26-27 22.046227002607164 27.60667276864408 28.418389067910383 21.928711160838375 28-29 21.96871092504531 27.727680587083086 28.422746753456202 21.8808617344154 30-31 22.194606159778683 27.57115835092472 28.3486221660384 21.8856133232582 32-33 21.969235142241278 27.669479119785866 28.35407537248028 22.007210365492575 34-35 22.087472002514115 27.70606853472563 28.38190162361005 21.824557839150202 36-37 22.109139727929012 27.62974459314758 28.29155267773107 21.969563001192334 38-39 21.973168207223203 27.788041296871913 28.33770015978515 21.90109033611973 40-41 22.230200859915357 27.651668954190896 28.175666291031337 21.942463894862417 42-43 22.082953473750393 27.726494550979773 28.082337839253903 22.108214136015928 44-45 22.19074498666533 27.794728501175726 27.94230383135186 22.072222680807087 46-47 22.179888535955588 27.760579927067003 27.788835133882657 22.270696403094757 48-49 22.16091055519155 27.853859828717773 27.752914185221833 22.23231543086884 50-51 22.129616658062787 27.94504245144519 27.70292295245696 22.222417938035065 52-53 22.280299408152956 27.868737663792732 27.572644447173417 22.278318480880902 54-55 22.234118314407276 27.77658886860393 27.656384200748164 22.33290861624063 56-57 22.250826022970443 27.91022880506991 27.619532736342983 22.21941243561666 58-59 22.223118872760246 27.962964383057802 27.620647734137414 22.193269010044535 60-61 22.30947410451656 27.899210780762772 27.621382461129162 22.169932653591502 62-63 22.252602824356543 27.980250855807252 27.55412836430112 22.21301795553508 64-65 22.203970297225204 27.957038256196455 27.55591242856869 22.283079018009648 66-67 22.27858519206343 27.94019698289134 27.466631264193065 22.314586560852163 68-69 22.2414090475565 27.91935898387751 27.53153585346027 22.30769611510572 70-71 22.22719773799543 27.737693757398496 27.596665660333453 22.438442844272625 72-73 22.294795541125296 27.78849261949823 27.527842957777743 22.388868881598732 74-75 22.16683298474994 27.91600948666001 27.518785079443692 22.398372449146358 76-77 22.254968712329763 27.890734636598026 27.45948223249878 22.394814418573432 78-79 22.209656766906814 27.82051956283704 27.483406269962607 22.486417400293547 80-81 22.19693034316369 27.88291140806119 27.498437466502416 22.421720782272708 82-83 22.22566417802944 27.89383759036249 27.57414003482408 22.306358196783986 84-85 22.331997647309812 27.835836468174485 27.52639881493118 22.30576706958452 86-87 22.185398689065376 27.860823583385546 27.589312955794586 22.364464771754488 88-89 22.265883648992585 27.877037730158904 27.5106633123769 22.346415308471613 90-91 22.20867613428701 27.939419219764922 27.53514966458519 22.316754981362877 92-93 22.270017180611347 27.88021001245583 27.593766734545728 22.2560060723871 94-95 22.104007059762715 27.9774577947056 27.62453447166544 22.29400067386624 96-97 22.12076161418182 28.062776405074814 27.749673730301627 22.066788250441743 98-99 23.221259072980118 30.05225585093309 27.948499081206617 18.777985994880172 100 29.715185852094983 41.42993864616345 28.85487550174156 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1484.0 1 1322.5 2 1690.0 3 2353.5 4 3059.5 5 4971.0 6 6766.0 7 7964.5 8 8662.0 9 8490.0 10 7779.0 11 7030.5 12 7530.5 13 9811.5 14 15162.0 15 22590.0 16 29002.5 17 33298.0 18 35295.0 19 35289.0 20 34311.5 21 33384.0 22 33834.0 23 36925.0 24 43349.5 25 53815.5 26 68104.0 27 84517.5 28 102157.5 29 122421.5 30 143333.5 31 163717.0 32 183995.0 33 203406.0 34 222765.5 35 241475.0 36 260936.5 37 278543.5 38 291680.5 39 302242.0 40 311718.5 41 320228.5 42 327623.5 43 335003.5 44 341839.0 45 346459.5 46 347828.5 47 347957.0 48 345340.0 49 340004.0 50 334678.5 51 325335.5 52 311250.5 53 294840.5 54 276848.0 55 257588.0 56 236555.0 57 213785.5 58 190551.5 59 165373.5 60 139215.0 61 114736.5 62 92601.0 63 72800.0 64 55479.0 65 42314.0 66 31872.0 67 24473.5 68 18973.5 69 14073.0 70 10406.5 71 7607.0 72 5415.5 73 3734.0 74 2570.5 75 1797.5 76 1231.5 77 792.5 78 529.0 79 354.5 80 237.5 81 163.0 82 116.0 83 83.5 84 60.0 85 41.0 86 29.0 87 21.5 88 16.0 89 12.5 90 10.0 91 6.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008187044328826859 3 0.002913181417619373 4 3.2647722783665393E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.3812498100781512E-4 16-17 3.6414767720242163E-4 18-19 0.0017579543037358287 20-21 3.767178806253869E-5 22-23 0.0017518891675795012 24-25 2.8889855791888535E-4 26-27 0.002557085359970079 28-29 0.005482414432682332 30-31 0.00283402298757917 32-33 0.002052843345945161 34-35 0.0023017617227678285 36-37 0.002856882494573677 38-39 0.0 40-41 6.616985217200919E-4 42-43 0.006424453631653264 44-45 0.004057594274198321 46-47 6.162785697031828E-4 48-49 0.016387762936166613 50-51 0.01106776066855031 52-53 0.01569950034453028 54-55 0.013446049633211924 56-57 0.011690209587543774 58-59 0.017956860398451697 60-61 0.009412106623070291 62-63 0.020598964784646553 64-65 0.015333917199815934 66-67 0.031052717172874056 68-69 0.02219990558188305 70-71 0.022261419255726552 72-73 0.019737671807994177 74-75 0.0097573251159721 76-77 0.012122768041657423 78-79 0.012906081356913537 80-81 0.010083302257579646 82-83 0.005094355579494658 84-85 0.0029955084345201373 86-87 0.014322890312756633 88-89 0.0014439830408129993 90-91 1.7806846465363233E-4 92-93 0.0011789143015454205 94-95 0.0027776072635540983 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 184.0 20-21 549.0 22-23 1185.0 24-25 2711.0 26-27 4433.0 28-29 10322.0 30-31 22156.0 32-33 28492.0 34-35 39191.0 36-37 59948.0 38-39 69933.0 40-41 71344.0 42-43 78085.0 44-45 88573.0 46-47 88228.0 48-49 82895.0 50-51 77189.0 52-53 75149.0 54-55 80799.0 56-57 83890.0 58-59 82707.0 60-61 80489.0 62-63 78452.0 64-65 82412.0 66-67 85477.0 68-69 85582.0 70-71 84343.0 72-73 80459.0 74-75 82267.0 76-77 82445.0 78-79 87207.0 80-81 88081.0 82-83 85451.0 84-85 85638.0 86-87 90317.0 88-89 96142.0 90-91 100999.0 92-93 109074.0 94-95 132566.0 96-97 291671.0 98-99 1630776.0 100-101 3375991.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.71210770214094 #Duplication Level Percentage of deduplicated Percentage of total 1 90.13501124282408 77.25661791378623 2 6.867762683208007 11.773008295517384 3 1.6719134754807308 4.299096836371955 4 0.6190079046903244 2.122258887811747 5 0.285496061087637 1.2235234568240276 6 0.1432611522360607 0.7367529185994026 7 0.08096923238937348 0.48580304969823607 8 0.05586726139431176 0.3830800580522328 9 0.03203638595345478 0.24713155469068843 >10 0.10745093959690988 1.3876659769686284 >50 0.0011060024890427664 0.06243739356885552 >100 1.176586500352424E-4 0.02262365811064667 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.255681645525592E-5 0.0 1.255681645525592E-5 0.0 5 0.0 1.255681645525592E-5 0.0 1.255681645525592E-5 0.0 6 0.0 1.255681645525592E-5 0.0 1.255681645525592E-5 0.0 7 0.0 1.255681645525592E-5 0.0 1.255681645525592E-5 0.0 8 0.0 2.511363291051184E-5 0.0 1.255681645525592E-5 0.0 9 0.0 1.1301134809730327E-4 0.0 3.767044936576776E-5 0.0 10-11 0.0 1.1301134809730327E-4 0.0 5.650567404865164E-5 0.0 12-13 0.0 1.1301134809730327E-4 0.0 8.161930695916347E-5 0.0 14-15 0.0 1.5068179746307103E-4 0.0 8.789771518679144E-5 0.0 16-17 0.0 1.5068179746307103E-4 0.0 1.3812498100781512E-4 0.0 18-19 0.0 1.6323861391832694E-4 0.0 1.3812498100781512E-4 1.883522468288388E-5 20-21 0.0 1.8207383860121082E-4 0.0 1.5068179746307103E-4 6.27840822762796E-5 22-23 0.0 2.2602269619460653E-4 0.0 1.883522468288388E-4 6.27840822762796E-5 24-25 0.0 2.5741473733274637E-4 0.0 2.0090906328409472E-4 6.27840822762796E-5 26-27 0.0 2.636931455603743E-4 0.0 2.7624996201563025E-4 6.27840822762796E-5 28-29 0.0 2.636931455603743E-4 0.0 6.780680885838196E-4 6.906249050390756E-5 30-31 0.0 2.8880677847088613E-4 0.0 0.002166050838531646 7.534089873153552E-5 32-33 0.0 2.8880677847088613E-4 0.0 0.00529269813589037 7.534089873153552E-5 34-35 0.0 3.5159086074716575E-4 0.0 0.008695595395264724 7.534089873153552E-5 36-37 0.0 4.143749430234453E-4 0.0 0.01396945830647221 7.534089873153552E-5 38-39 0.0 4.457669841615851E-4 0.0 0.02252692872072912 9.41761234144194E-5 40-41 0.0 5.022726582102368E-4 0.0 0.031366927505229285 1.0045453164204736E-4 42-43 0.0 5.336646993483766E-4 0.0 0.03939073322013782 1.0045453164204736E-4 44-45 0.0 6.21562414535168E-4 0.0 0.048927635317904686 1.0045453164204736E-4 46-47 0.0 6.780680885838196E-4 0.0 0.05946908273209203 1.0045453164204736E-4 48-49 0.0 6.780680885838196E-4 0.0 0.06944547340579285 1.0045453164204736E-4 50-51 0.0 7.91079436681123E-4 0.0 0.07871868235799936 1.0045453164204736E-4 52-53 0.0 8.036362531363789E-4 0.0 0.08868251621524492 1.0045453164204736E-4 54-55 0.0 8.161930695916348E-4 0.0 0.09828220239528808 1.0045453164204736E-4 56-57 0.0 8.413067025021466E-4 0.0 0.10656342284752936 1.0673293986967531E-4 58-59 0.0 8.413067025021466E-4 0.0 0.11461862060357603 1.1301134809730327E-4 60-61 0.0 8.789771518679143E-4 0.0 0.12235989794824131 1.1301134809730327E-4 62-63 0.0 8.978123765507981E-4 0.0 0.12990654463785012 1.1301134809730327E-4 64-65 0.0 0.0010045453164204735 0.0 0.13750341859327994 1.1301134809730327E-4 66-67 0.0 0.0010171021328757295 0.0 0.14506890050757165 1.1301134809730327E-4 68-69 0.0 0.0010359373575586132 0.0 0.15243347335857924 1.1301134809730327E-4 70-71 0.0 0.0010422157657862413 0.0 0.1591136997127754 1.1301134809730327E-4 72-73 0.0 0.0010547725822414972 0.0 0.1640359717632357 1.1301134809730327E-4 74-75 0.0 0.0010547725822414972 0.0 0.16807298825360048 1.1301134809730327E-4 76-77 0.0 0.0010673293986967532 0.0 0.17221673768383494 1.1301134809730327E-4 78-79 0.0 0.001092443031607265 0.0 0.17478460664893475 1.1301134809730327E-4 80-81 0.0 0.001092443031607265 0.0 0.17565730539257507 1.3184657278018716E-4 82-83 0.0 0.001104999848062521 0.0 0.17626631099065498 1.5068179746307103E-4 84-85 0.0 0.0011175566645177768 0.0 0.1764734984621667 1.5068179746307103E-4 86-87 0.0 0.0011301134809730327 0.0 0.17657395299380874 1.56960205690699E-4 88 0.0 0.0011552271138835445 0.0 0.17657395299380874 1.6323861391832694E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7765 0.0 45.4475 1 GTATCAA 13605 0.0 33.79013 1 TCAACGC 15615 0.0 28.569134 4 ATCAACG 15770 0.0 28.367723 3 CAACGCA 16080 0.0 27.742973 5 TATCAAC 16755 0.0 26.922552 2 AACGCAG 16825 0.0 26.53895 6 ACGCAGA 20135 0.0 22.217003 7 CGCAGAG 20415 0.0 21.992912 8 GTACATG 21275 0.0 21.666143 1 TACATGG 21390 0.0 20.935051 2 ACATGGG 21460 0.0 20.31019 3 GCAGAGT 24410 0.0 18.376669 9 CATGGGG 15915 0.0 18.067606 4 GAGTACT 13550 0.0 17.129 12-13 CAGAGTA 24045 0.0 16.41784 10-11 AGAGTAC 21775 0.0 16.280586 10-11 GTGGTAT 4825 0.0 15.326166 1 GAGTACA 15530 0.0 15.157984 1 CGTCGAA 390 0.0038709359 14.932133 94 >>END_MODULE