##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140302_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5198903 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.99368039757618 31.0 31.0 34.0 30.0 34.0 2 32.1025631753468 33.0 31.0 34.0 30.0 34.0 3 31.84140346530797 31.0 31.0 34.0 30.0 34.0 4 35.89933914904741 37.0 35.0 37.0 35.0 37.0 5 35.83911779081087 37.0 35.0 37.0 35.0 37.0 6 35.88138997784725 37.0 35.0 37.0 35.0 37.0 7 35.8649682442623 37.0 35.0 37.0 35.0 37.0 8 35.86247387189182 37.0 35.0 37.0 35.0 37.0 9 37.63898980227175 39.0 37.0 39.0 35.0 39.0 10-11 37.549316173046506 39.0 37.0 39.0 35.0 39.0 12-13 37.50188789827392 39.0 37.0 39.0 35.0 39.0 14-15 38.75741815148311 40.0 38.0 41.0 34.5 41.0 16-17 38.696869416490365 40.0 38.0 41.0 34.0 41.0 18-19 38.698240186439335 40.0 38.0 41.0 34.0 41.0 20-21 38.75792453969443 40.0 38.0 41.0 34.0 41.0 22-23 38.716691250333525 40.0 38.0 41.0 34.0 41.0 24-25 38.62673500686948 40.0 38.0 41.0 34.0 41.0 26-27 38.48348565758248 40.0 38.0 41.0 34.0 41.0 28-29 38.35731343839261 40.0 38.0 41.0 34.0 41.0 30-31 38.241252415176746 40.0 38.0 41.0 34.0 41.0 32-33 38.05747528011649 40.0 37.5 41.0 33.0 41.0 34-35 38.143524667108125 40.0 38.0 41.0 33.0 41.0 36-37 38.10266515237283 40.0 38.0 41.0 33.0 41.0 38-39 38.06623085358776 40.0 37.0 41.0 33.0 41.0 40-41 38.00330542601351 40.0 37.0 41.0 33.0 41.0 42-43 38.03767586187454 40.0 37.0 41.0 33.0 41.0 44-45 38.065029168330945 40.0 37.0 41.0 33.0 41.0 46-47 38.011468593092914 40.0 37.0 41.0 33.0 41.0 48-49 37.919088302513 40.0 37.0 41.0 33.0 41.0 50-51 37.8274818451046 40.0 37.0 41.0 33.0 41.0 52-53 37.564783173424324 40.0 36.0 41.0 32.0 41.0 54-55 37.5085370534652 39.0 36.0 41.0 32.0 41.0 56-57 37.34407785002104 39.0 36.0 41.0 31.5 41.0 58-59 37.173762950025 39.0 35.5 41.0 31.0 41.0 60-61 37.02710541363763 39.0 35.0 40.5 31.0 41.0 62-63 36.78147898757395 38.5 35.0 40.0 31.0 41.0 64-65 36.420676063421894 38.0 35.0 40.0 31.0 41.0 66-67 36.173768068135416 37.5 35.0 40.0 30.0 41.0 68-69 35.87996575987029 37.0 34.0 39.5 30.0 41.0 70-71 35.60560114703583 36.5 34.0 39.0 30.0 41.0 72-73 35.310056889640464 36.0 34.0 39.0 30.0 40.5 74-75 34.988121639892924 35.5 34.0 38.5 29.5 40.0 76-77 33.75010739283826 34.5 32.5 36.5 28.5 39.0 78-79 34.36168232412504 35.0 33.5 37.0 29.0 39.0 80-81 34.292886674624626 35.0 34.0 37.0 29.0 39.0 82-83 34.020126922326014 35.0 34.0 36.0 29.0 38.0 84-85 33.7796259498013 35.0 33.0 36.0 29.0 37.0 86-87 33.58134189637734 35.0 33.0 35.5 29.0 37.0 88-89 33.40968338658373 35.0 33.0 35.0 29.0 36.5 90-91 33.27786070544727 35.0 33.0 35.0 29.0 36.0 92-93 33.24945412439983 35.0 33.0 35.0 29.0 36.0 94-95 33.24507340287397 35.0 33.0 35.0 29.0 36.0 96-97 33.234719035770745 35.0 33.0 35.0 29.0 35.0 98-99 33.3374707261153 35.0 33.0 35.0 29.5 35.0 100 32.22977636076933 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 30.0 21 168.0 22 751.0 23 2658.0 24 6879.0 25 14850.0 26 26752.0 27 42690.0 28 62207.0 29 83831.0 30 106535.0 31 133697.0 32 166085.0 33 211160.0 34 282039.0 35 387676.0 36 598026.0 37 1014608.0 38 1298801.0 39 730394.0 40 29061.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.147333774067334 20.225285988217127 13.275935327125744 24.35144491058979 2 15.249834759264061 21.41019791184955 40.13212718496729 23.207840143919103 3 18.507000120028437 25.789994860320753 30.327973858421842 25.375031161228968 4 12.695772935709229 17.417693810974672 38.60119871972425 31.28533453359185 5 13.113574152085548 38.02090556411612 35.76831496952338 13.097205314274953 6 30.7292711558573 37.725977961119874 18.378107843135368 13.166643039887454 7 27.13064659986924 32.32631961011775 22.970999843620856 17.572033946392153 8 24.98205871507893 36.50220056038745 21.028897827099293 17.486842897434325 9 25.72811995145899 16.282338793395454 21.095354154520674 36.89418710062488 10-11 24.565326569855216 26.656988984022206 28.77724396858337 20.000440477539204 12-13 25.010795546675908 24.10157488993351 28.975208808473635 21.91242075491695 14-15 22.045925143708423 25.547198010346428 26.488417250204133 25.918459595741016 16-17 21.87118848414169 28.711427050772254 27.164979477322344 22.25240498776372 18-19 21.88900256846598 28.120182202779358 28.617727512554286 21.373087716200377 20-21 22.71709097819915 27.31837945515568 28.43767937190403 21.526850194741144 22-23 22.369604424672357 27.22484549717446 28.335130455693157 22.070419622460022 24-25 22.224628569685777 27.269324897027623 28.48642465652864 22.01962187675796 26-27 22.1457555035439 27.458648101610876 28.34161956291984 22.053976831925386 28-29 22.06391100930422 27.639421229112703 28.330624940397698 21.96604282118538 30-31 22.373710366872075 27.40737788925775 28.276627717075097 21.942284026795075 32-33 22.191355268083996 27.523676697744033 28.183284875043025 22.10168315912895 34-35 22.237493117411425 27.593817890883432 28.24354008104843 21.925148910656713 36-37 22.320469926843085 27.44508834966196 28.1721146336693 22.062327089825658 38-39 22.09555996268386 27.67105659193984 28.255903923552346 21.977479521823952 40-41 22.313248183605666 27.520533520673073 28.12901990743143 22.037198388289838 42-43 22.2501952475693 27.59637121994133 27.965402421722107 22.18803111076726 44-45 22.29730271128559 27.713311584085957 27.82084408244158 22.16854162218687 46-47 22.262345667289015 27.612919306739965 27.656117939659268 22.468617086311752 48-49 22.29533600800323 27.732271722410662 27.695977479905686 22.276414789680423 50-51 22.21908487687922 27.783479176106724 27.647668435162664 22.34976751185139 52-53 22.425401788090184 27.75169590038211 27.503930163290196 22.318972148237506 54-55 22.434760701448575 27.68035436475588 27.49993100291055 22.384953930884997 56-57 22.433617840592834 27.841965398564643 27.392138262290562 22.33227849855196 58-59 22.32708976682846 27.87688224087974 27.53470263856464 22.26132535372716 60-61 22.406315134345625 27.796434572233093 27.49219863590568 22.305051657515605 62-63 22.360312935639595 27.830802006363058 27.478897091035105 22.329987966962243 64-65 22.34928361668661 27.793338126945216 27.4868154755317 22.370562780836476 66-67 22.458205355152746 27.832629973576612 27.276254371142734 22.432910300127908 68-69 22.406073339751025 27.839968017787058 27.387617015812072 22.366341626649845 70-71 22.336856391615942 27.596471460946898 27.48176732988742 22.584904817549745 72-73 22.415106561921867 27.63861237419878 27.447576928610946 22.49870413526841 74-75 22.243125676765096 27.826385120188355 27.390767048625353 22.53972215442119 76-77 22.324108161766095 27.863180309467104 27.28527113704931 22.527440391717487 78-79 22.321450069524843 27.831193580037844 27.307236603174665 22.540119747262647 80-81 22.257520238472296 27.78913594529884 27.40338541852315 22.549958397705712 82-83 22.39725768066122 27.71714992416547 27.471949234993232 22.41364316018008 84-85 22.461516228406133 27.758948379296953 27.366317718461787 22.413217673835124 86-87 22.28917403714516 27.839731366386623 27.411427397096432 22.459667199371783 88-89 22.395514495117336 27.75499576112314 27.387287919058778 22.462201824700742 90-91 22.339056217024122 27.801439127805338 27.456635167164162 22.40286948800637 92-93 22.428789091717967 27.791860072808248 27.459772716957392 22.31957811851639 94-95 22.151413789444984 27.959282909925577 27.468760359196825 22.420542941432608 96-97 22.16995301388769 28.08564410473894 27.595456432295883 22.148946449077485 98-99 23.322326611689835 30.048285198189934 27.764094403118545 18.865293787001686 100 29.806056560122467 41.5295864458282 28.664356994049335 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 913.0 1 829.0 2 1160.0 3 1708.5 4 2329.0 5 3757.5 6 5010.5 7 5770.5 8 6200.5 9 6076.5 10 5587.0 11 5018.5 12 5182.0 13 6564.5 14 10014.5 15 14873.0 16 19024.0 17 21696.5 18 22879.0 19 22744.0 20 21671.5 21 20435.5 22 20371.5 23 22284.0 24 26598.0 25 33590.5 26 43583.5 27 55144.5 28 66096.5 29 78232.5 30 89939.5 31 100515.0 32 113311.0 33 127010.0 34 139741.5 35 151705.5 36 165006.5 37 176872.5 38 184460.5 39 191044.0 40 200134.5 41 207590.0 42 211736.5 43 216478.0 44 221563.5 45 225685.0 46 228738.0 47 231709.5 48 232885.0 49 229891.5 50 224193.5 51 218837.5 52 209332.5 53 196949.5 54 185410.0 55 172537.5 56 158286.5 57 143071.5 58 127727.0 59 111538.5 60 95472.0 61 79754.5 62 64322.5 63 51115.5 64 39715.0 65 30021.0 66 23059.0 67 17739.0 68 13135.5 69 9686.5 70 7152.0 71 5145.5 72 3617.0 73 2533.0 74 1768.0 75 1228.0 76 824.0 77 509.5 78 336.5 79 237.5 80 154.0 81 95.5 82 68.5 83 47.0 84 34.5 85 23.0 86 14.5 87 11.5 88 8.0 89 4.5 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008213271145855194 3 0.002596701650328925 4 4.42401021907891E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.5387861631578815E-4 16-17 3.846965407894704E-4 18-19 0.0015387861631578816 20-21 6.732452991368323E-5 22-23 0.0017313635546048018 24-25 3.0787469384507496E-4 26-27 0.0025988041265929463 28-29 0.005750388632839804 30-31 0.0029717389555032267 32-33 0.002051375539223897 34-35 0.0023799492866806286 36-37 0.002989416293999128 38-39 0.0 40-41 8.746685453486816E-4 42-43 0.006532075803385121 44-45 0.003843920986023544 46-47 6.262120025335922E-4 48-49 0.01589503707075868 50-51 0.0105808531109652 52-53 0.014805963808234093 54-55 0.013249980860542234 56-57 0.01155080725255954 58-59 0.017645558808665158 60-61 0.008797966177499748 62-63 0.020513056334938988 64-65 0.015446400988569663 66-67 0.032394456537630095 68-69 0.022795720589596204 70-71 0.021427437953076285 72-73 0.019610217729996316 74-75 0.010647795796499033 76-77 0.013142407817692672 78-79 0.013103164031676804 80-81 0.010081302137643378 82-83 0.004755181176925432 84-85 0.003252145530889809 86-87 0.013530006718394084 88-89 0.0012727978059132292 90-91 1.9299720664114417E-4 92-93 0.001138186843065955 94-95 0.0028425294664787535 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 130.0 20-21 391.0 22-23 890.0 24-25 2165.0 26-27 3055.0 28-29 6858.0 30-31 13954.0 32-33 18601.0 34-35 25723.0 36-37 38831.0 38-39 46510.0 40-41 46731.0 42-43 50880.0 44-45 58736.0 46-47 58577.0 48-49 55315.0 50-51 51746.0 52-53 49960.0 54-55 54241.0 56-57 56607.0 58-59 55432.0 60-61 54406.0 62-63 52586.0 64-65 55804.0 66-67 57885.0 68-69 58773.0 70-71 57189.0 72-73 54026.0 74-75 55016.0 76-77 55724.0 78-79 59060.0 80-81 59339.0 82-83 56835.0 84-85 57272.0 86-87 61045.0 88-89 64596.0 90-91 68099.0 92-93 72620.0 94-95 88161.0 96-97 189508.0 98-99 1053601.0 100-101 2172025.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.95513840174276 #Duplication Level Percentage of deduplicated Percentage of total 1 91.76841899523731 80.71503993635216 2 5.990222701191858 10.537417334811824 3 1.305076309398417 3.4436450225392026 4 0.4393964697867534 1.5458870925332429 5 0.1849772875070055 0.8134851461928815 6 0.099946505486107 0.5274485233680649 7 0.0628945304619537 0.38723279920456355 8 0.03715972311014079 0.26147108712982975 9 0.024248509891636096 0.19195029391993929 >10 0.0843964573081142 1.1302929632397802 >50 0.0019080931818408844 0.11497112909157413 >100 0.001191522897913818 0.2159662807315 >500 1.303156335101079E-4 0.0827837859045009 >1k 3.257890746263681E-5 0.032408604980996375 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.770448111842056E-5 0.0 0.0 0.0 3 3.846965407894704E-5 5.770448111842056E-5 0.0 0.0 0.0 4 3.846965407894704E-5 1.1540896223684111E-4 0.0 0.0 0.0 5 3.846965407894704E-5 1.1540896223684111E-4 0.0 0.0 0.0 6 3.846965407894704E-5 1.1540896223684111E-4 0.0 0.0 1.923482703947352E-5 7 3.846965407894704E-5 1.3464378927631463E-4 0.0 1.923482703947352E-5 1.923482703947352E-5 8 3.846965407894704E-5 1.5387861631578815E-4 0.0 1.923482703947352E-5 1.923482703947352E-5 9 3.846965407894704E-5 2.6928757855262925E-4 0.0 1.923482703947352E-5 3.846965407894704E-5 10-11 3.846965407894704E-5 2.6928757855262925E-4 0.0 1.923482703947352E-5 3.846965407894704E-5 12-13 3.846965407894704E-5 2.6928757855262925E-4 0.0 1.923482703947352E-5 3.846965407894704E-5 14-15 3.846965407894704E-5 3.7507912726973366E-4 0.0 1.923482703947352E-5 3.846965407894704E-5 16-17 3.846965407894704E-5 4.039313678289439E-4 0.0 1.923482703947352E-5 3.846965407894704E-5 18-19 3.846965407894704E-5 4.3278360838815415E-4 0.0 3.846965407894704E-5 3.846965407894704E-5 20-21 3.846965407894704E-5 4.6163584894736445E-4 0.0 3.846965407894704E-5 3.846965407894704E-5 22-23 3.846965407894704E-5 5.289577435855218E-4 0.0 9.61741351973676E-5 4.80870675986838E-5 24-25 5.770448111842056E-5 6.251318787828895E-4 0.0 1.634960298355249E-4 5.770448111842056E-5 26-27 7.693930815789408E-5 6.732189463815732E-4 0.0 3.1737464615131305E-4 5.770448111842056E-5 28-29 8.655672167763084E-5 6.732189463815732E-4 0.0 7.309234274999938E-4 5.770448111842056E-5 30-31 9.61741351973676E-5 6.924537734210467E-4 0.0 0.0022120051095394547 5.770448111842056E-5 32-33 9.61741351973676E-5 6.924537734210467E-4 0.0 0.004722150038190749 5.770448111842056E-5 34-35 9.61741351973676E-5 9.136542843749922E-4 0.0 0.008328680108092033 5.770448111842056E-5 36-37 9.61741351973676E-5 0.0011540896223684112 0.0 0.013589405303388041 5.770448111842056E-5 38-39 9.61741351973676E-5 0.0011925592764473582 0.0 0.02178344162220376 5.770448111842056E-5 40-41 1.1540896223684111E-4 0.0013560553062828833 0.0 0.03028523517365106 5.770448111842056E-5 42-43 1.1540896223684111E-4 0.0013849075468420934 0.0 0.03895052475493388 6.732189463815731E-5 44-45 1.442612027960514E-4 0.0015772558172368286 0.0 0.049087278604736426 7.693930815789408E-5 46-47 1.5387861631578815E-4 0.0017311344335526168 0.0 0.05991648622796002 8.655672167763084E-5 48-49 1.7311344335526168E-4 0.001759986674111827 0.0 0.07096689436213754 1.3464378927631463E-4 50-51 1.7311344335526168E-4 0.0018753956363486682 0.0 0.0815749014744072 1.3464378927631463E-4 52-53 1.7311344335526168E-4 0.001885013049868405 0.0 0.09136542843749923 1.3464378927631463E-4 54-55 1.923482703947352E-4 0.001885013049868405 0.0 0.10066546731108467 1.3464378927631463E-4 56-57 2.1158309743420873E-4 0.001885013049868405 0.0 0.10876332949470302 1.3464378927631463E-4 58-59 2.1158309743420873E-4 0.0018946304633881417 0.0 0.11693813098647926 1.3464378927631463E-4 60-61 2.1158309743420873E-4 0.0019042478769078785 0.0 0.12493020162138052 1.3464378927631463E-4 62-63 2.1158309743420873E-4 0.0019427175309868255 0.0 0.1317585652203936 1.5387861631578815E-4 64-65 2.2120051095394548E-4 0.0020581264932236667 0.0 0.13886583381147907 1.5387861631578815E-4 66-67 2.3081792447368223E-4 0.002086978733782877 0.0 0.1462520073946369 1.5387861631578815E-4 68-69 2.3081792447368223E-4 0.0021254483878618237 0.0 0.15386899890226843 1.5387861631578815E-4 70-71 2.3081792447368223E-4 0.0021350658013815607 0.0 0.16050501423088678 1.5387861631578815E-4 72-73 2.3081792447368223E-4 0.0021543006284210344 0.0 0.16599655735065647 1.5387861631578815E-4 74-75 2.3081792447368223E-4 0.0022504747636184017 0.0 0.17005510585598538 1.5387861631578815E-4 76-77 2.40435337993419E-4 0.002365883725855243 0.0 0.1733057916256564 1.5387861631578815E-4 78-79 2.6928757855262925E-4 0.00240435337993419 0.0 0.17607560671934058 1.5387861631578815E-4 80-81 2.6928757855262925E-4 0.002413970793453927 0.0 0.17703734807131427 1.5387861631578815E-4 82-83 2.6928757855262925E-4 0.0024235882069736634 0.0 0.17750860133378138 1.5387861631578815E-4 84-85 2.6928757855262925E-4 0.002442823034013137 0.0 0.1777201844312156 1.5387861631578815E-4 86-87 2.7890499207236606E-4 0.002481292688092084 0.0 0.17783559339345242 1.5387861631578815E-4 88 2.885224055921028E-4 0.002577466823289452 0.0 0.17784521080697216 1.5387861631578815E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5210 0.0 42.957844 1 GTATCAA 8895 0.0 33.225906 1 TCAACGC 10335 0.0 27.839664 4 ATCAACG 10375 0.0 27.773172 3 CAACGCA 10515 0.0 27.284876 5 AACGCAG 11065 0.0 25.928646 6 TATCAAC 11235 0.0 25.685446 2 TACATGG 14875 0.0 22.293543 2 ACGCAGA 13325 0.0 21.56175 7 GTACATG 15850 0.0 21.516993 1 ACATGGG 15330 0.0 20.881762 3 CGCAGAG 13910 0.0 20.625483 8 CATGGGG 11095 0.0 18.470562 4 GTGGTAT 3145 0.0 18.116808 1 GCAGAGT 16080 0.0 17.689137 9 TGGTATC 3130 0.0 17.2869 2 GAGTACT 8395 0.0 16.868774 12-13 ACCGAAC 695 0.0 16.512255 8 GGACCGA 810 0.0 16.191914 6 AGAGTAC 14615 0.0 16.041117 10-11 >>END_MODULE