##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140301_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8268119 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.954700095632393 31.0 31.0 34.0 30.0 34.0 2 32.060948808308154 33.0 31.0 34.0 30.0 34.0 3 31.78409708423403 31.0 31.0 34.0 30.0 34.0 4 35.86561973769366 37.0 35.0 37.0 35.0 37.0 5 35.7981330457387 37.0 35.0 37.0 35.0 37.0 6 35.847940988754516 37.0 35.0 37.0 35.0 37.0 7 35.82957562657238 37.0 35.0 37.0 35.0 37.0 8 35.82778223196836 37.0 35.0 37.0 35.0 37.0 9 37.59346751056679 39.0 37.0 39.0 35.0 39.0 10-11 37.498920794439464 39.0 37.0 39.0 34.5 39.0 12-13 37.446208200438335 39.0 37.0 39.0 34.0 39.0 14-15 38.67019820348497 40.0 38.0 41.0 34.0 41.0 16-17 38.60684401131624 40.0 38.0 41.0 34.0 41.0 18-19 38.610688114188974 40.0 38.0 41.0 34.0 41.0 20-21 38.67430061794134 40.0 38.0 41.0 34.0 41.0 22-23 38.62899154536752 40.0 38.0 41.0 34.0 41.0 24-25 38.52698853939861 40.0 38.0 41.0 34.0 41.0 26-27 38.3637250300327 40.0 38.0 41.0 34.0 41.0 28-29 38.229640476314806 40.0 38.0 41.0 34.0 41.0 30-31 38.09232372464752 40.0 37.5 41.0 33.0 41.0 32-33 37.89024412255306 40.0 37.0 41.0 33.0 41.0 34-35 37.9812946245383 40.0 37.0 41.0 33.0 41.0 36-37 37.93909361028308 40.0 37.0 41.0 33.0 41.0 38-39 37.89567108999151 40.0 37.0 41.0 33.0 41.0 40-41 37.82915231171439 40.0 37.0 41.0 33.0 41.0 42-43 37.86035235655077 40.0 37.0 41.0 33.0 41.0 44-45 37.8801058553587 40.0 37.0 41.0 33.0 41.0 46-47 37.818652958906654 40.0 37.0 41.0 33.0 41.0 48-49 37.71132988623248 40.0 37.0 41.0 32.5 41.0 50-51 37.59677136678106 40.0 36.0 41.0 32.0 41.0 52-53 37.31424455894966 39.0 36.0 41.0 31.0 41.0 54-55 37.23351381466669 39.0 36.0 41.0 31.0 41.0 56-57 37.04657101633227 39.0 35.0 41.0 31.0 41.0 58-59 36.85468965246278 39.0 35.0 40.0 31.0 41.0 60-61 36.67895482809803 38.0 35.0 40.0 31.0 41.0 62-63 36.40851189952052 38.0 35.0 40.0 31.0 41.0 64-65 36.031230633270106 37.0 34.5 40.0 30.0 41.0 66-67 35.774319428292884 37.0 34.0 40.0 30.0 41.0 68-69 35.47363617384934 36.0 34.0 39.0 29.0 41.0 70-71 35.19891198165993 36.0 34.0 39.0 29.0 40.5 72-73 34.90825565660847 35.5 34.0 38.5 29.0 40.0 74-75 34.59247790606248 35.0 34.0 37.5 29.0 40.0 76-77 33.39217535734325 34.5 31.5 36.0 27.5 39.0 78-79 34.03709284690876 35.0 33.0 36.5 29.0 39.0 80-81 33.99393944436912 35.0 33.0 36.0 29.0 39.0 82-83 33.74690508337742 35.0 33.0 36.0 29.0 37.0 84-85 33.536161122274365 35.0 33.0 35.5 29.0 37.0 86-87 33.360361033591076 35.0 33.0 35.0 29.0 36.5 88-89 33.20759711587683 35.0 33.0 35.0 29.0 36.0 90-91 33.08808411238372 35.0 33.0 35.0 29.0 36.0 92-93 33.07342818128913 35.0 33.0 35.0 29.0 36.0 94-95 33.08145720754424 35.0 33.0 35.0 29.0 35.5 96-97 33.084294043452275 35.0 33.0 35.0 29.0 35.0 98-99 33.20374347215487 34.0 33.0 35.0 29.0 35.0 100 32.01866381972686 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 2.0 19 13.0 20 57.0 21 328.0 22 1311.0 23 4575.0 24 12500.0 25 26636.0 26 48078.0 27 76150.0 28 109769.0 29 146255.0 30 185760.0 31 230760.0 32 286555.0 33 362794.0 34 485681.0 35 670690.0 36 1040050.0 37 1714919.0 38 1897691.0 39 935937.0 40 31606.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.023439672312406 20.09342149042606 13.869696360199942 24.01344247706159 2 15.327882415382883 20.809664279642302 40.26536031069216 23.597092994282658 3 18.572266233054673 25.730008802704045 30.143661387866395 25.554063576374887 4 13.1705177787174 17.395025306939164 37.55255144841226 31.881905465931183 5 13.562867201113093 37.65463462729552 35.08317913663313 13.699319034958254 6 31.12187911180282 36.90486312545816 18.07573161440952 13.897526148329506 7 27.480204385060254 32.16135374926268 22.354758077381327 18.003683788295742 8 25.465816348313325 36.104681125174906 20.44918560073942 17.980316925772357 9 25.959725543379335 16.418075259923086 20.832513416896877 36.7896857798007 10-11 25.214894705797047 26.250202736559547 27.838913542487713 20.695989015155682 12-13 25.656234507510113 23.694966170661065 28.394940856559998 22.253858465268824 14-15 22.729734541445275 25.104104832689657 25.905878346049665 26.260282279815407 16-17 22.317938176349628 28.337454393985173 26.574491497318974 22.77011593234623 18-19 22.35330637025055 27.55160682399546 28.309664589434057 21.785422216319926 20-21 23.13248385302015 26.586619173177873 28.218582936210357 22.06231403759162 22-23 23.009621653922874 26.54902700813014 28.056054541253715 22.385296796693265 24-25 22.76954071946008 26.670276733983272 28.140406169476385 22.419776377080264 26-27 22.716242574744637 26.834855638545633 28.0286404738896 22.420261312820134 28-29 22.47231340547127 27.005795052472664 28.040127804832714 22.481763737223346 30-31 22.80599976886988 26.739023504379333 28.03056622994728 22.42441049680351 32-33 22.555039489666566 26.95649971126955 27.944242231299672 22.54421856776421 34-35 22.58389317145263 27.055837470336787 28.07822712255945 22.282042235651137 36-37 22.78094807407729 26.953070169557375 27.82867802724477 22.43730372912057 38-39 22.601154900474008 26.953227349599434 27.951520530461227 22.49409721946533 40-41 22.71384443092826 26.824254566456162 27.853684039738418 22.608216962877155 42-43 22.73085580244009 26.94671227843162 27.65359344435232 22.668838474775974 44-45 22.707443406214345 27.105050443173397 27.489014902593805 22.698491248018456 46-47 22.828663532909562 27.07918034130393 27.192802448623738 22.89935367716277 48-49 22.852961110457777 27.183285217820284 27.111808048093454 22.851945623628477 50-51 22.703237543738283 27.253529233858547 27.091141355746696 22.952091866656474 52-53 22.833368787603803 27.223011197772394 27.03000568852004 22.91361432610376 54-55 22.802668333874106 27.14265429975767 27.03861152672277 23.016065839645453 56-57 22.91432800729279 27.23601340509533 26.928335096778145 22.921323490833732 58-59 22.755593828997124 27.4257774208374 27.06738766534555 22.751241084819924 60-61 22.984694836507405 27.412107768764766 26.873779599664672 22.72941779506316 62-63 22.921686068090587 27.509102487748354 26.74839445689214 22.82081698726892 64-65 22.79661574558324 27.468801194735228 26.82376762388416 22.910815435797378 66-67 22.90048670931429 27.3034091344586 26.778723333485182 23.017380822741927 68-69 22.798262482550527 27.250241016860567 26.975002324156517 22.976494176432393 70-71 22.78116705409959 27.125275380759945 26.942451609919427 23.151105955221034 72-73 22.927643000728423 27.143972972930396 26.91609953341415 23.012284492927026 74-75 22.714427588584826 27.286923079024373 26.99274312092846 23.005906211462342 76-77 22.897949038215003 27.15917761879016 26.857637637079595 23.08523570591524 78-79 22.80037200144192 27.111948940990754 26.902377452415156 23.185301605152173 80-81 22.77522458998302 27.206291788522165 27.008151147107018 23.0103324743878 82-83 22.842307794857923 27.14185402788637 27.09370884289183 22.92212933436388 84-85 22.964277763180206 27.099243248910465 27.015522037228557 22.92095695068077 86-87 22.777503357241965 27.143521776151434 27.104257899188973 22.974716967417628 88-89 22.80853247274387 26.988276339349394 27.117161580273947 23.086029607632792 90-91 22.91964436815358 27.010406191005952 27.047791574455456 23.02215786638501 92-93 22.955646455069765 26.963699688941645 27.08699231743689 22.9936615385517 94-95 22.721918980963963 27.02334311745929 27.238274923795863 23.016462977780883 96-97 22.764579208843365 27.184045221357326 27.234787530039196 22.816588039760113 98-99 23.879340159999618 29.137354493654705 27.43193281851579 19.551372527829887 100 22.927131803905894 30.048868054141426 21.07805031377456 25.94594982817811 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1213.0 1 1150.5 2 1963.5 3 2967.5 4 3989.0 5 6770.0 6 9253.5 7 10870.5 8 11880.5 9 11522.0 10 10030.5 11 8408.0 12 8773.5 13 11937.0 14 19754.0 15 30892.0 16 40325.5 17 45845.5 18 47291.5 19 45374.5 20 41460.5 21 36891.0 22 33771.0 23 34393.0 24 39367.0 25 47755.0 26 58453.0 27 70975.5 28 85403.5 29 103029.0 30 120829.0 31 137265.5 32 154771.0 33 171608.5 34 188603.5 35 206038.5 36 223938.5 37 241999.5 38 256392.5 39 266936.5 40 277233.0 41 288641.5 42 300143.5 43 312964.5 44 328672.5 45 346780.0 46 360838.0 47 370979.0 48 376033.5 49 372692.5 50 369437.5 51 368886.5 52 362770.0 53 349911.5 54 336740.0 55 318719.5 56 297620.5 57 273504.5 58 244904.5 59 214552.5 60 179788.0 61 146111.0 62 118026.0 63 93197.0 64 70584.0 65 52776.5 66 39955.0 67 30893.0 68 23995.0 69 17948.5 70 13135.0 71 9635.0 72 7016.5 73 4945.0 74 3394.0 75 2269.5 76 1493.5 77 996.5 78 667.5 79 471.5 80 336.0 81 224.5 82 151.5 83 106.0 84 72.5 85 48.5 86 35.0 87 28.0 88 19.5 89 12.5 90 7.5 91 4.0 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007776859525122946 3 0.00247940311454153 4 3.7493412951603624E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.3304114273149674E-4 16-17 2.539876361237665E-4 18-19 0.0017839607775359788 20-21 7.861819214080542E-5 22-23 0.0018205086162374489 24-25 2.722364880863868E-4 26-27 0.0026328389830123783 28-29 0.005803136177132555 30-31 0.002961873885352174 32-33 0.0022165043716590688 34-35 0.002243989943745557 36-37 0.0028047795904554335 38-39 0.0 40-41 7.827442587900302E-4 42-43 0.0060141680138466255 44-45 0.0038876432729224686 46-47 4.5313989697411307E-4 48-49 0.01575394241590146 50-51 0.011060440605566409 52-53 0.014812984068950092 54-55 0.012703836605956517 56-57 0.010765327339723676 58-59 0.016724176603712795 60-61 0.008579535014353953 62-63 0.019285477985626878 64-65 0.014186325311011612 66-67 0.02971723949037284 68-69 0.02096791250708536 70-71 0.020622435950589445 72-73 0.019123939099478456 74-75 0.009423433088693322 76-77 0.011593689255498576 78-79 0.012250322911827136 80-81 0.009530385902653173 82-83 0.003959387540222508 84-85 0.003009310418135593 86-87 0.01337057297662832 88-89 0.0012240533987050014 90-91 2.455102939926509E-4 92-93 0.0011634496851963697 94-95 0.0026999870277496225 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 192.0 20-21 714.0 22-23 1496.0 24-25 3595.0 26-27 5449.0 28-29 12436.0 30-31 25858.0 32-33 31513.0 34-35 42937.0 36-37 63804.0 38-39 76978.0 40-41 77055.0 42-43 83193.0 44-45 95374.0 46-47 92732.0 48-49 85593.0 50-51 77871.0 52-53 72790.0 54-55 78032.0 56-57 82254.0 58-59 81181.0 60-61 79957.0 62-63 77530.0 64-65 81245.0 66-67 85132.0 68-69 84790.0 70-71 82092.0 72-73 77028.0 74-75 78124.0 76-77 77824.0 78-79 83815.0 80-81 84992.0 82-83 82968.0 84-85 84360.0 86-87 88947.0 88-89 96236.0 90-91 103174.0 92-93 112365.0 94-95 136927.0 96-97 311646.0 98-99 533948.0 100-101 4733972.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.4936743669325 #Duplication Level Percentage of deduplicated Percentage of total 1 87.93233429557998 71.65929017408244 2 7.76238901872071 12.651712060021564 3 2.235512945156649 5.465404919869745 4 0.8974021858192374 2.925304060293055 5 0.4414583450277852 1.7988031308129628 6 0.24815730417639642 1.2133950322996239 7 0.14629873184687914 0.8345694849397319 8 0.09236392741462446 0.6021660659182715 9 0.06310862906875805 0.4628658660365608 >10 0.17808153239305138 2.1812101631864227 >50 0.0022293756748747577 0.12154525042616089 >100 6.637091210786619E-4 0.08373379211346263 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.418929867845395E-5 0.0 0.0 0.0 3 0.0 3.628394801768092E-5 0.0 0.0 0.0 4 0.0 7.256789603536185E-5 0.0 1.2094649339226975E-5 0.0 5 0.0 7.256789603536185E-5 0.0 1.2094649339226975E-5 0.0 6 0.0 7.256789603536185E-5 0.0 1.2094649339226975E-5 0.0 7 0.0 7.256789603536185E-5 0.0 2.418929867845395E-5 0.0 8 0.0 8.466254537458883E-5 0.0 3.628394801768092E-5 0.0 9 0.0 1.3304114273149674E-4 0.0 4.83785973569079E-5 0.0 10-11 0.0 1.3304114273149674E-4 0.0 9.070987004420231E-5 0.0 12-13 0.0 1.3908846740111021E-4 0.0 9.67571947138158E-5 0.0 14-15 0.0 2.3584566211492603E-4 0.0 1.1489916872265627E-4 0.0 16-17 0.0 2.5398763612376646E-4 0.0 1.451357920707237E-4 0.0 18-19 0.0 2.842242594718339E-4 0.0 1.5723044140995068E-4 0.0 20-21 0.0 3.1446088281990135E-4 0.0 1.8141974008840462E-4 0.0 22-23 0.0 3.7493412951603624E-4 0.0 2.1165636343647206E-4 0.0 24-25 0.0 4.233127268729441E-4 0.0 2.842242594718339E-4 0.0 26-27 0.0 4.475020255513981E-4 0.0 4.293600515425576E-4 0.0 28-29 0.0 4.475020255513981E-4 0.0 9.91761245816612E-4 0.0 30-31 0.0 5.503065449348274E-4 0.0 0.002745485400004523 0.0 32-33 0.0 5.684485189436678E-4 0.0 0.005926378176221218 0.0 34-35 0.0 6.71253038327097E-4 0.0 0.009857139211469985 0.0 36-37 0.0 7.982468563889804E-4 0.0 0.015989126426458063 0.0 38-39 0.0 8.889567264331827E-4 0.0 0.025586230677134666 0.0 40-41 0.0 0.0010703764665215875 0.0 0.03554617440798808 0.0 42-43 0.0 0.0011368970378873356 0.0 0.04433898447760609 0.0 44-45 0.0 0.0012336542326011515 0.0 0.05383933153356888 0.0 46-47 0.0 0.0013304114273149674 0.0 0.06461566409482011 0.0 48-49 0.0 0.0013485534013238077 0.0 0.07594835052567579 0.0 50-51 0.0 0.0014815945440553044 0.0 0.08674887238560547 0.0 52-53 0.0 0.001487641868724918 0.0 0.09710189221998378 0.0 54-55 0.0 0.0014936891933945316 0.0 0.10701345735348028 0.0 56-57 0.0 0.001499736518064145 0.0 0.11555832711164413 0.0 58-59 0.0 0.001511831167403372 0.0 0.12390968248038037 0.0 60-61 0.0 0.0015904463881083472 0.0 0.13233965306982157 0.0 62-63 0.0 0.0016267303361260283 0.0 0.1396569159200539 0.0 64-65 0.0 0.0017174402061702304 0.0 0.14679880635486742 0.0 66-67 0.0 0.0017355821801790712 0.0 0.15429144162051853 0.0 68-69 0.0 0.0017779134528663654 0.0 0.1617659349121608 0.0 70-71 0.0 0.0018141974008840463 0.0 0.16765602914036432 0.0 72-73 0.0 0.0018323393748928868 0.0 0.17299581682363302 0.0 74-75 0.0 0.0018444340242321135 0.0 0.1768781992615249 0.0 76-77 0.0 0.001874670647580181 0.0 0.180694061128051 0.0 78-79 0.0 0.0018988599462586352 0.0 0.18314322761924445 0.0 80-81 0.0 0.0019109545955978621 0.0 0.18394147447563344 0.0 82-83 0.0 0.001923049244937089 0.0 0.1844675917218898 0.0 84-85 0.0 0.001935143894276316 0.0 0.18470948470867438 0.0 86-87 0.0 0.00195933319295477 0.0 0.18488485712409314 0.0 88 0.0 0.001983522491633224 0.0 0.18489090444876277 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11085 0.0 45.22745 1 GTATCAA 19235 0.0 34.466568 1 ATCAACG 23525 0.0 27.547852 3 TCAACGC 23850 0.0 27.275183 4 CAACGCA 23855 0.0 27.200342 5 TATCAAC 24145 0.0 27.11612 2 AACGCAG 24635 0.0 26.472988 6 ACGCAGA 28565 0.0 22.686495 7 CGCAGAG 28860 0.0 22.42603 8 GTACATG 28130 0.0 21.765116 1 TACATGG 28350 0.0 21.33444 2 ACATGGG 29120 0.0 20.3154 3 GCAGAGT 33205 0.0 19.31769 9 GTGGTAT 6145 0.0 18.853355 1 GAGTACT 17510 0.0 18.576317 12-13 CATGGGG 23550 0.0 18.064995 4 TGGTATC 6185 0.0 17.46489 2 CAGAGTA 32640 0.0 17.220829 10-11 AGAGTAC 30395 0.0 16.899155 10-11 GTACTTT 20115 0.0 16.171122 14-15 >>END_MODULE