##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140300_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8437844 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.97831353601702 31.0 31.0 34.0 30.0 34.0 2 32.08149724029029 33.0 31.0 34.0 30.0 34.0 3 31.81020329363757 31.0 31.0 34.0 30.0 34.0 4 35.88401492134721 37.0 35.0 37.0 35.0 37.0 5 35.82182249399254 37.0 35.0 37.0 35.0 37.0 6 35.86881447440839 37.0 35.0 37.0 35.0 37.0 7 35.85252204236058 37.0 35.0 37.0 35.0 37.0 8 35.85132588372101 37.0 35.0 37.0 35.0 37.0 9 37.62177838319836 39.0 37.0 39.0 35.0 39.0 10-11 37.52947589455316 39.0 37.0 39.0 35.0 39.0 12-13 37.473645637440086 39.0 37.0 39.0 34.0 39.0 14-15 38.70200663818862 40.0 38.0 41.0 34.0 41.0 16-17 38.64160975244387 40.0 38.0 41.0 34.0 41.0 18-19 38.65151844475911 40.0 38.0 41.0 34.0 41.0 20-21 38.715979281137386 40.0 38.0 41.0 34.0 41.0 22-23 38.67363930878669 40.0 38.0 41.0 34.0 41.0 24-25 38.57798167215596 40.0 38.0 41.0 34.0 41.0 26-27 38.420274276441646 40.0 38.0 41.0 34.0 41.0 28-29 38.29048600375653 40.0 38.0 41.0 34.0 41.0 30-31 38.16095478447859 40.0 38.0 41.0 33.5 41.0 32-33 37.96373078073671 40.0 37.0 41.0 33.0 41.0 34-35 38.04472254129188 40.0 37.0 41.0 33.0 41.0 36-37 38.002272034385086 40.0 37.0 41.0 33.0 41.0 38-39 37.96775559086943 40.0 37.0 41.0 33.0 41.0 40-41 37.90223547431604 40.0 37.0 41.0 33.0 41.0 42-43 37.93737788338262 40.0 37.0 41.0 33.0 41.0 44-45 37.96588190881804 40.0 37.0 41.0 33.0 41.0 46-47 37.90705836401545 40.0 37.0 41.0 33.0 41.0 48-49 37.81040829573206 40.0 37.0 41.0 33.0 41.0 50-51 37.70643032561924 40.0 36.5 41.0 32.5 41.0 52-53 37.42953478211584 39.0 36.0 41.0 32.0 41.0 54-55 37.356523738548525 39.0 36.0 41.0 32.0 41.0 56-57 37.176647413824995 39.0 35.5 41.0 31.5 41.0 58-59 36.99371385310321 39.0 35.0 40.5 31.0 41.0 60-61 36.82539860699767 38.5 35.0 40.0 31.0 41.0 62-63 36.56497266660087 38.0 35.0 40.0 31.0 41.0 64-65 36.19872238625584 37.5 35.0 40.0 30.0 41.0 66-67 35.94613345148903 37.0 34.0 40.0 30.0 41.0 68-69 35.65184064029205 36.5 34.0 39.0 30.0 41.0 70-71 35.37870310956758 36.0 34.0 39.0 30.0 41.0 72-73 35.08711202381261 36.0 34.0 39.0 29.0 40.0 74-75 34.7707417381413 35.0 34.0 38.0 29.0 40.0 76-77 33.55604806946906 34.5 32.0 36.5 28.0 39.0 78-79 34.18675770179358 35.0 33.0 37.0 29.0 39.0 80-81 34.13543949307771 35.0 34.0 36.0 29.0 39.0 82-83 33.87933257412295 35.0 33.0 36.0 29.0 37.5 84-85 33.66066136338027 35.0 33.0 36.0 29.0 37.0 86-87 33.47107900527111 35.0 33.0 35.0 29.0 37.0 88-89 33.31195784958668 35.0 33.0 35.0 29.0 36.0 90-91 33.191750790627154 35.0 33.0 35.0 29.0 36.0 92-93 33.17406184703996 35.0 33.0 35.0 29.0 36.0 94-95 33.17093560458457 35.0 33.0 35.0 29.0 35.5 96-97 33.162936262494725 35.0 33.0 35.0 29.0 35.0 98-99 33.277390070285655 35.0 33.0 35.0 29.0 35.0 100 32.14143798715743 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 3.0 17 0.0 18 2.0 19 14.0 20 61.0 21 301.0 22 1314.0 23 4532.0 24 11748.0 25 24734.0 26 45302.0 27 72291.0 28 104025.0 29 139315.0 30 179389.0 31 223774.0 32 279030.0 33 355797.0 34 482714.0 35 661616.0 36 1025255.0 37 1715863.0 38 2008479.0 39 1064773.0 40 37512.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.072880228646085 20.16375273114791 13.914360113792101 23.849006926413903 2 15.247576292402067 21.00802199598278 40.39513453374274 23.34926717787241 3 18.627156663834512 25.93943771157459 30.254845349290743 25.178560275300153 4 12.9738686841261 17.540849180361676 38.07510648205156 31.41017565346067 5 13.324138251430103 37.968502380465914 35.20850823978258 13.498851128321403 6 30.684023075088852 37.15428965029455 18.364288318200717 13.79739895641588 7 27.21233054320511 32.48231420253799 22.520551458405723 17.784803795851168 8 25.30787485523553 36.06718730519313 20.73533239059646 17.88960544897488 9 26.103101692802095 16.310896480190912 20.94992512305276 36.63607670395423 10-11 25.010174400000757 26.375013569817124 28.184539794762735 20.43027223541938 12-13 25.592378811459422 23.881550784773932 28.509285073295977 22.016785330470675 14-15 22.657915999162107 25.385156673825893 26.151443513485244 25.80548381352676 16-17 22.051591646396325 28.49503950635588 27.005199625329745 22.448169221918057 18-19 22.07064521208005 27.677108870386874 28.66779963754334 21.584446279989738 20-21 22.969404294435193 26.728949156174252 28.525584045746122 21.776062503644432 22-23 22.80825837863152 26.671700687795212 28.369571588444654 22.150469345128613 24-25 22.533869814100594 26.849838459425403 28.446239431929182 22.170052294544824 26-27 22.453394962352 26.996840876227907 28.434011783537006 22.115752377883087 28-29 22.29863374620053 27.248587954295 28.282520979151325 22.170257320353144 30-31 22.53274842137241 27.09085731733512 28.192471781658195 22.183922479634273 32-33 22.30598625411541 27.13090791885908 28.3328892738532 22.23021655317231 34-35 22.43075618270805 27.1629845160101 28.35002224061497 22.05623706066689 36-37 22.46463730314239 27.30675911385301 28.10023555511204 22.128368027892563 38-39 22.37749648917403 27.169484468632437 28.236955949951138 22.216063092242397 40-41 22.565864248314618 27.128637886465622 28.042449109917456 22.263048755302304 42-43 22.412806175291312 27.239768909923654 27.842265675355215 22.50515923942982 44-45 22.580756025447624 27.315818700495264 27.723831753482475 22.379593520574637 46-47 22.70890976552522 27.238365945939453 27.40695837875114 22.645765909784192 48-49 22.58216220298372 27.44803927448577 27.307964783121268 22.661833739409243 50-51 22.58328651262901 27.551985072250908 27.227708140012925 22.637020275107165 52-53 22.61204198673315 27.553876450196178 27.173155851888016 22.66092571118266 54-55 22.631650709958652 27.392350986232643 27.15666691980956 22.819331383999145 56-57 22.687569940248554 27.480977675079437 27.15306892966743 22.67838345500458 58-59 22.666688424611227 27.620245611997383 27.11345463067455 22.599611332716844 60-61 22.77126189233895 27.59930172404223 27.02397340112568 22.605462982493144 62-63 22.64194947322426 27.733766301235917 26.99047150479795 22.63381272074188 64-65 22.62662454033364 27.689447237108766 27.03290224361854 22.65102597893906 66-67 22.703470203033728 27.605147448178784 26.908059422793883 22.783322925993605 68-69 22.713231809741377 27.565331915835223 27.02371866877349 22.69771760564991 70-71 22.58790296701574 27.373881239661884 27.119374979150322 22.91884081417205 72-73 22.672747690179694 27.466674720738393 27.10574415548386 22.754833433598055 74-75 22.62620570059548 27.45008283544647 27.093219451907796 22.83049201205025 76-77 22.612539194566043 27.35200361854967 27.117917187344275 22.917539999540015 78-79 22.620031324679683 27.33155215652395 27.062060467819176 22.986356050977186 80-81 22.549350692123888 27.409881910069988 27.129111625295455 22.911655772510674 82-83 22.590419710392187 27.39265841734053 27.227316458035517 22.78960541423177 84-85 22.75697527538494 27.299543874570936 27.17111115903007 22.772369691014056 86-87 22.65464713516107 27.260548215819767 27.21078266266524 22.87402198635392 88-89 22.651688469591935 27.218209385975044 27.23366251535493 22.896439629078092 90-91 22.70954142147057 27.18401856439695 27.282758843534666 22.823681170597812 92-93 22.789024803423104 27.112014288279752 27.24917435840438 22.849786549892766 94-95 22.608483401319933 27.262702439779346 27.296989796482386 22.83182436241833 96-97 22.59682676041771 27.40290489605054 27.3748243373211 22.625444006210653 98-99 23.773577635357995 29.347009146302206 27.56153212416163 19.317881094178173 100 30.58652190274381 40.842947544793695 28.570530552462493 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1120.0 1 1105.0 2 1935.0 3 2912.5 4 3945.0 5 6968.5 6 9604.5 7 11021.5 8 11881.0 9 11525.5 10 10290.5 11 8830.5 12 9115.5 13 12446.0 14 20963.0 15 33425.0 16 44427.0 17 51636.0 18 54418.5 19 52891.0 20 48494.5 21 42910.0 22 38525.0 23 37922.5 24 41853.5 25 49948.0 26 61999.0 27 76641.0 28 92136.5 29 110019.0 30 128226.5 31 145776.5 32 164714.5 33 184022.0 34 202686.5 35 220841.5 36 240886.5 37 260458.5 38 276617.0 39 290849.5 40 305258.5 41 320076.5 42 333606.5 43 347324.0 44 361512.0 45 374569.5 46 384145.5 47 390637.0 48 394399.5 49 393132.5 50 392414.5 51 390028.5 52 378231.0 53 359347.5 54 337450.5 55 310020.0 56 278037.0 57 247095.0 58 218204.5 59 187051.5 60 155249.5 61 127196.5 62 102682.0 63 81317.5 64 62389.0 65 47528.5 66 36064.0 67 27730.0 68 21415.5 69 15969.0 70 11795.0 71 8565.5 72 6013.0 73 4105.0 74 2845.5 75 1949.0 76 1306.5 77 847.0 78 567.0 79 375.5 80 246.0 81 163.0 82 117.5 83 88.5 84 64.0 85 46.5 86 34.5 87 24.5 88 16.5 89 11.5 90 8.0 91 5.5 92 5.0 93 4.0 94 2.5 95 1.5 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007904862900996986 3 0.0025717470007741317 4 4.385006406849901E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.3629073967236178E-4 16-17 2.903585323454665E-4 18-19 0.0017243741410720558 20-21 7.111085827250392E-5 22-23 0.0016297777824662697 24-25 2.667537508985896E-4 26-27 0.002407819792124496 28-29 0.005977403751779495 30-31 0.002902783346898492 32-33 0.0019580818844771087 34-35 0.0024527945005588655 36-37 0.0028855709920188608 38-39 0.0 40-41 7.144729114678754E-4 42-43 0.0066144511182719915 44-45 0.003934810779111452 46-47 5.817025154159157E-4 48-49 0.0161506154329945 50-51 0.011205566243801798 52-53 0.015190207834238727 54-55 0.013184461191782888 56-57 0.011481788089003029 58-59 0.017494714395702608 60-61 0.00889417883626677 62-63 0.020172829346707766 64-65 0.01484034873541412 66-67 0.03188777343981377 68-69 0.02212287560681344 70-71 0.02128058974092579 72-73 0.02008379734603867 74-75 0.009883722470219233 76-77 0.012349075478913781 78-79 0.012724031905471164 80-81 0.010305036972865451 82-83 0.0045719737370482055 84-85 0.0033722279840123965 86-87 0.013811344600615644 88-89 0.0012285463012774959 90-91 2.2958847880796303E-4 92-93 0.0011521555704556126 94-95 0.0024938853380501373 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 194.0 20-21 640.0 22-23 1497.0 24-25 3496.0 26-27 5900.0 28-29 13539.0 30-31 28761.0 32-33 35655.0 34-35 48823.0 36-37 72646.0 38-39 87866.0 40-41 87901.0 42-43 95502.0 44-45 106910.0 46-47 103285.0 48-49 93636.0 50-51 84412.0 52-53 79420.0 54-55 84653.0 56-57 87531.0 58-59 86917.0 60-61 84876.0 62-63 81575.0 64-65 84296.0 66-67 89238.0 68-69 90078.0 70-71 88304.0 72-73 82611.0 74-75 84012.0 76-77 84872.0 78-79 89306.0 80-81 91643.0 82-83 88076.0 84-85 88412.0 86-87 93888.0 88-89 100163.0 90-91 107845.0 92-93 114581.0 94-95 136374.0 96-97 306619.0 98-99 1742124.0 100-101 3499767.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.61678968416582 #Duplication Level Percentage of deduplicated Percentage of total 1 89.54021734549649 75.76605739398373 2 7.220943834885729 12.220261715953992 3 1.7694354702122237 4.491718471279524 4 0.6771829767233539 2.292041980763896 5 0.309864890856569 1.310988615005865 6 0.16474053458471324 0.8363889100447037 7 0.10245637819344096 0.6068670863777024 8 0.05271342932021056 0.3568352929855518 9 0.0353426942288908 0.2691526791994051 >10 0.1246026271481372 1.6167232530667592 >50 0.0017444316127282976 0.09914227597816513 >100 7.323127347348337E-4 0.12183429433718185 >500 2.307400288666667E-5 0.011988031023518062 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 1.1851368667161896E-5 1.1851368667161896E-5 0.0 0.0 1.1851368667161896E-5 3 1.1851368667161896E-5 1.1851368667161896E-5 0.0 0.0 1.1851368667161896E-5 4 1.1851368667161896E-5 1.1851368667161896E-5 0.0 0.0 1.1851368667161896E-5 5 2.3702737334323793E-5 3.5554106001485684E-5 0.0 0.0 1.1851368667161896E-5 6 2.3702737334323793E-5 3.5554106001485684E-5 0.0 0.0 1.1851368667161896E-5 7 2.3702737334323793E-5 3.5554106001485684E-5 0.0 0.0 2.3702737334323793E-5 8 3.5554106001485684E-5 3.5554106001485684E-5 0.0 0.0 3.5554106001485684E-5 9 3.5554106001485684E-5 7.110821200297137E-5 0.0 0.0 3.5554106001485684E-5 10-11 3.5554106001485684E-5 7.110821200297137E-5 0.0 5.925684333580948E-6 3.5554106001485684E-5 12-13 3.5554106001485684E-5 7.110821200297137E-5 0.0 2.370273733432379E-5 4.147979033506664E-5 14-15 5.925684333580948E-5 9.481094933729517E-5 0.0 3.5554106001485684E-5 4.7405474668647586E-5 16-17 5.925684333580948E-5 9.481094933729517E-5 0.0 3.5554106001485684E-5 4.7405474668647586E-5 18-19 7.703389633655232E-5 1.1258800233803802E-4 0.0 3.5554106001485684E-5 4.7405474668647586E-5 20-21 1.1851368667161895E-4 1.4221642400594274E-4 0.0 6.518252766939043E-5 7.703389633655232E-5 22-23 1.4221642400594274E-4 1.7777053000742844E-4 0.0 7.703389633655232E-5 8.295958067013328E-5 24-25 1.7777053000742844E-4 1.8962189867459032E-4 0.0 1.481421083395237E-4 8.295958067013328E-5 26-27 2.2517600467607601E-4 2.0147326734175222E-4 0.0 2.5480442634398076E-4 8.295958067013328E-5 28-29 2.2517600467607601E-4 2.0147326734175222E-4 0.0 7.407105416976185E-4 8.295958067013328E-5 30-31 2.2517600467607601E-4 2.844328480118855E-4 0.0 0.002405827839433865 8.295958067013328E-5 32-33 2.4295305767681885E-4 2.962842166790474E-4 0.0 0.006293076762262966 1.1851368667161896E-4 34-35 2.6665579501114267E-4 3.9109516601634254E-4 0.0 0.01050623832343902 1.1851368667161896E-4 36-37 2.844328480118855E-4 5.096088526879615E-4 0.0 0.01717855888305117 1.1851368667161896E-4 38-39 3.0220990101262834E-4 5.570143273566091E-4 0.0 0.027649243100488705 1.1851368667161896E-4 40-41 3.7331811301559973E-4 6.636766453610662E-4 0.0 0.037829568785580775 1.1851368667161896E-4 42-43 3.792437973491807E-4 6.636766453610662E-4 0.0 0.04738769761564684 1.1851368667161896E-4 44-45 3.792437973491807E-4 7.051564356961328E-4 0.0 0.05744950961406729 1.1851368667161896E-4 46-47 3.792437973491807E-4 7.466362260311995E-4 0.0 0.06869645847920393 1.1851368667161896E-4 48-49 3.792437973491807E-4 7.466362260311995E-4 0.0 0.07904862900996984 1.244393710051999E-4 50-51 3.792437973491807E-4 7.821903320326851E-4 0.0 0.08930006290706488 1.3036505533878086E-4 52-53 3.792437973491807E-4 7.88116016366266E-4 0.0 0.09970556459683302 1.3036505533878086E-4 54-55 3.792437973491807E-4 8.177444380341708E-4 0.0 0.11015254607693625 1.3036505533878086E-4 56-57 3.792437973491807E-4 8.295958067013327E-4 0.0 0.11962771532633218 1.3629073967236178E-4 58-59 3.9109516601634254E-4 8.710755970363993E-4 0.0 0.12832069424369544 1.4221642400594274E-4 60-61 4.0294653468350445E-4 9.007040187043041E-4 0.0 0.13698404473939077 1.481421083395237E-4 62-63 4.0294653468350445E-4 9.362581247057898E-4 0.0 0.14513778638239816 1.5406779267310465E-4 64-65 4.0294653468350445E-4 0.0010429204427102468 0.0 0.15222490484536097 1.5406779267310465E-4 66-67 4.0294653468350445E-4 0.0010547718113774088 0.0 0.16020680164269452 1.5406779267310465E-4 68-69 4.0294653468350445E-4 0.0010606974957109898 0.0 0.16802277927868778 1.5406779267310465E-4 70-71 4.0294653468350445E-4 0.0010784745487117326 0.0 0.17512767479465133 1.6591916134026655E-4 72-73 4.0294653468350445E-4 0.0010903259173788945 0.0 0.18011710100352651 1.6591916134026655E-4 74-75 4.088722190170854E-4 0.0010962516017124753 0.0 0.18383843076501533 1.6591916134026655E-4 76-77 4.1479790335066636E-4 0.0011140286547132183 0.0 0.187547909157837 1.7777053000742844E-4 78-79 4.1479790335066636E-4 0.0011140286547132183 0.0 0.18995373699727086 1.7777053000742844E-4 80-81 4.2664927201782827E-4 0.001131805707713961 0.0 0.1907181502763028 1.8962189867459034E-4 82-83 4.2664927201782827E-4 0.001137731392047542 0.0 0.19129886734099374 1.9554758300817127E-4 84-85 4.2664927201782827E-4 0.0011495827607147038 0.0 0.19148256355533474 2.0147326734175222E-4 86-87 4.2664927201782827E-4 0.0011732854980490276 0.0 0.1915595974516713 2.1332463600891413E-4 88 4.2664927201782827E-4 0.0011851368667161895 0.0 0.1915655231360049 2.2517600467607601E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11540 0.0 48.018433 1 GTATCAA 20425 0.0 34.581913 1 ATCAACG 25270 0.0 27.512625 3 TCAACGC 25335 0.0 27.441223 4 CAACGCA 25565 0.0 27.210304 5 TATCAAC 26015 0.0 26.931496 2 AACGCAG 26360 0.0 26.528961 6 GTGGTAT 5615 0.0 22.818857 1 ACGCAGA 30595 0.0 22.79011 7 CGCAGAG 30950 0.0 22.502338 8 GTACATG 31580 0.0 21.462065 1 TACATGG 31640 0.0 21.047363 2 TGGTATC 5600 0.0 20.985458 2 ACATGGG 32680 0.0 19.975866 3 GCAGAGT 35485 0.0 19.408075 9 GAGTACT 18360 0.0 18.42254 12-13 CATGGGG 24675 0.0 18.419712 4 CAGAGTA 34730 0.0 17.74489 10-11 AGAGTAC 32485 0.0 17.2694 10-11 ATGGGGG 16870 0.0 16.39719 5 >>END_MODULE