##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140299_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8952092 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.976910424959886 31.0 31.0 34.0 30.0 34.0 2 32.084684227999446 33.0 31.0 34.0 30.0 34.0 3 31.815686098847063 31.0 31.0 34.0 30.0 34.0 4 35.886838852862546 37.0 35.0 37.0 35.0 37.0 5 35.82312726455447 37.0 35.0 37.0 35.0 37.0 6 35.866704899815595 37.0 35.0 37.0 35.0 37.0 7 35.85060776855287 37.0 35.0 37.0 35.0 37.0 8 35.84827557625636 37.0 35.0 37.0 35.0 37.0 9 37.61849498418917 39.0 37.0 39.0 35.0 39.0 10-11 37.52637176874411 39.0 37.0 39.0 35.0 39.0 12-13 37.475919650959796 39.0 37.0 39.0 34.0 39.0 14-15 38.71646577135266 40.0 38.0 41.0 34.0 41.0 16-17 38.656849650338714 40.0 38.0 41.0 34.0 41.0 18-19 38.656924381474184 40.0 38.0 41.0 34.0 41.0 20-21 38.718909380518866 40.0 38.0 41.0 34.0 41.0 22-23 38.674693823786235 40.0 38.0 41.0 34.0 41.0 24-25 38.57971192570921 40.0 38.0 41.0 34.0 41.0 26-27 38.425018875245186 40.0 38.0 41.0 34.0 41.0 28-29 38.29496040926523 40.0 38.0 41.0 34.0 41.0 30-31 38.1693199903556 40.0 38.0 41.0 33.5 41.0 32-33 37.97753518379453 40.0 37.0 41.0 33.0 41.0 34-35 38.06825753965252 40.0 37.0 41.0 33.0 41.0 36-37 38.025348689350466 40.0 37.0 41.0 33.0 41.0 38-39 37.98691240426342 40.0 37.0 41.0 33.0 41.0 40-41 37.923922192359925 40.0 37.0 41.0 33.0 41.0 42-43 37.95676696963913 40.0 37.0 41.0 33.0 41.0 44-45 37.98524338133737 40.0 37.0 41.0 33.0 41.0 46-47 37.929394188770175 40.0 37.0 41.0 33.0 41.0 48-49 37.83419613212952 40.0 37.0 41.0 33.0 41.0 50-51 37.730654199847656 40.0 37.0 41.0 33.0 41.0 52-53 37.45990111539105 39.5 36.0 41.0 32.0 41.0 54-55 37.392201188390025 39.0 36.0 41.0 32.0 41.0 56-57 37.22116199452742 39.0 35.5 41.0 31.5 41.0 58-59 37.04202713900521 39.0 35.0 41.0 31.0 41.0 60-61 36.88575499323419 39.0 35.0 40.0 31.0 41.0 62-63 36.62966063245527 38.0 35.0 40.0 31.0 41.0 64-65 36.26271470704708 38.0 35.0 40.0 30.0 41.0 66-67 36.011443150767334 37.0 34.0 40.0 30.0 41.0 68-69 35.71849321315362 37.0 34.0 39.5 30.0 41.0 70-71 35.441857782053276 36.0 34.0 39.0 30.0 41.0 72-73 35.148179561436024 36.0 34.0 39.0 29.0 40.0 74-75 34.82594554384257 35.0 34.0 38.0 29.0 40.0 76-77 33.59643535607654 34.5 32.0 36.5 28.0 39.0 78-79 34.22571210003562 35.0 33.0 37.0 29.0 39.0 80-81 34.16586356079924 35.0 34.0 36.5 29.0 39.0 82-83 33.89931607025187 35.0 33.0 36.0 29.0 37.5 84-85 33.67391975748883 35.0 33.0 36.0 29.0 37.0 86-87 33.48132288523985 35.0 33.0 35.0 29.0 37.0 88-89 33.32081021215141 35.0 33.0 35.0 29.0 36.0 90-91 33.1923879125812 35.0 33.0 35.0 29.0 36.0 92-93 33.1710443016576 35.0 33.0 35.0 29.0 36.0 94-95 33.17118796739845 35.0 33.0 35.0 29.0 35.5 96-97 33.16442592009211 35.0 33.0 35.0 29.0 35.0 98-99 33.27717823781833 35.0 33.0 35.0 29.0 35.0 100 32.130976153060836 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 8.0 20 64.0 21 343.0 22 1349.0 23 4854.0 24 12657.0 25 26921.0 26 48982.0 27 78590.0 28 112744.0 29 151013.0 30 192112.0 31 238906.0 32 297488.0 33 377502.0 34 504206.0 35 694658.0 36 1070315.0 37 1798157.0 38 2171584.0 39 1129472.0 40 40164.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.6889258957571 20.256561259647466 13.922310003069674 24.132202841525757 2 15.087846260971915 20.96985748673081 40.52813326932828 23.41416298296899 3 18.369954995899732 25.749914738303843 30.418256514769965 25.461873751026467 4 12.899356092844256 17.6211259366133 38.10953380934258 31.369984161199866 5 13.337820924986026 37.82208672565027 35.48451021280836 13.355582136555345 6 30.839115594433125 37.35467642647104 18.283804500668673 13.522403478427163 7 27.21029900050178 32.357743865903075 22.609016976143675 17.822940157451463 8 25.119346405287168 36.46396842212971 20.70936044893194 17.707324723651187 9 25.686677482760455 16.57296417418409 20.96728898675304 36.773069356302415 10-11 24.796159378165463 26.474286680699887 28.408147503399206 20.321406437735448 12-13 25.282554066691898 23.875084170269922 28.73528891347408 22.1070728495641 14-15 22.3364941991713 25.395151050319797 26.16661954541753 26.101735205091376 16-17 22.044636375203012 28.590976322685556 26.92278691712789 22.44160038498354 18-19 22.121844759321228 27.90039066427225 28.42297617989055 21.55478839651597 20-21 22.84735007362621 26.9512705248108 28.335894597138143 21.865484804424845 22-23 22.648661056271965 26.92445910239681 28.158265887616285 22.26861395371494 24-25 22.46540475094751 27.06545588975831 28.230596028651146 22.238543330643033 26-27 22.441519924323668 27.256745800298404 28.149836991878075 22.15189728349985 28-29 22.244372884210335 27.328668769832575 28.189607204811935 22.237351141145147 30-31 22.558578231074783 27.164684747263447 28.115062107266418 22.161674914395356 32-33 22.335477946655626 27.325193543282055 28.03198687339628 22.307341636666038 34-35 22.360375641506486 27.37725554078451 28.175518873990395 22.086849943718608 36-37 22.519011493260184 27.29120312183947 27.976105518901267 22.213679865999087 38-39 22.376883123283932 27.328722963458794 28.035614505529523 22.258779407727747 40-41 22.521828470376306 27.182067382244696 28.01096111576526 22.28514303161374 42-43 22.469357390776814 27.24901307535641 27.854975866085613 22.426653667781164 44-45 22.459463327974778 27.42558852112294 27.69923464976834 22.415713501133947 46-47 22.582945654485048 27.370349916684226 27.398751662548516 22.647952766282213 48-49 22.504939497658594 27.53289186257849 27.370517147191098 22.591651492571813 50-51 22.425005753893405 27.57706821725478 27.38703372815463 22.610892300697184 52-53 22.549167615003455 27.52700225177439 27.307592728049652 22.616237405172505 54-55 22.546195090850453 27.444888234242892 27.308611459154662 22.70030521575199 56-57 22.619909913557617 27.570615287912716 27.226201309954323 22.583273488575344 58-59 22.503070754530082 27.76962886368662 27.289862611694303 22.437437770088998 60-61 22.69755049168717 27.68275895595457 27.205009353556687 22.414681198801574 62-63 22.63159298934497 27.743918029328636 27.114681228581812 22.50980775274458 64-65 22.48870245994749 27.76850086693515 27.141604963046618 22.601191710070747 66-67 22.604325697104507 27.653760216981944 27.110649125096685 22.631264960816864 68-69 22.540485966521533 27.591464251806702 27.182884026392617 22.685165755279144 70-71 22.52136789399819 27.407725624219058 27.265651760502724 22.805254721280026 72-73 22.647536411803383 27.459366427463195 27.198825938160496 22.69427122257292 74-75 22.410432054834857 27.59830041641654 27.26586184499259 22.725405683756016 76-77 22.556304776411647 27.503278409579767 27.152497302299643 22.78791951170894 78-79 22.525989852676005 27.490901695943187 27.136258444152894 22.84685000722791 80-81 22.48783319631476 27.53732967953721 27.235302138183513 22.739534985964514 82-83 22.548891219142593 27.51909288397027 27.327418206799447 22.60459769008769 84-85 22.68032690459771 27.553450756341256 27.17696818883233 22.589254150228705 86-87 22.456388542266534 27.577479891782307 27.26193245075306 22.704199115198097 88-89 22.513281662367188 27.540679012560194 27.241734942848016 22.704304382224603 90-91 22.56988014849448 27.618697230477757 27.193048006695346 22.618374614332414 92-93 22.59772212726514 27.56391706931327 27.246055410798604 22.592305392622983 94-95 22.390670591960017 27.64188621453191 27.33921551301669 22.62822768049138 96-97 22.378654848049766 27.81680394746187 27.42068764970913 22.383853554779236 98-99 23.550106484260315 29.72861326101653 27.550037666023997 19.17124258869916 100 22.560418905978803 30.752479258218607 21.171827071470435 25.51527476433215 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1547.0 1 1437.0 2 2032.0 3 2894.0 4 3776.0 5 6068.5 6 8153.0 7 9589.0 8 10503.5 9 10248.5 10 9267.0 11 8262.0 12 8683.0 13 11238.5 14 17519.0 15 26563.5 16 34538.0 17 39780.0 18 41924.5 19 41258.0 20 38764.5 21 36040.5 22 35108.5 23 37358.0 24 43225.5 25 52876.0 26 66583.5 27 82463.5 28 98922.0 29 118526.0 30 139422.5 31 159973.0 32 181363.0 33 201524.5 34 223006.0 35 245564.0 36 268859.0 37 289948.5 38 305559.0 39 318762.0 40 332392.5 41 344981.5 42 354534.5 43 364553.5 44 375632.5 45 389413.5 46 400056.0 47 404295.0 48 405410.5 49 401161.5 50 394343.0 51 386095.0 52 372952.0 53 354925.0 54 336713.5 55 315175.0 56 292069.5 57 267660.0 58 240099.5 59 210360.0 60 175925.5 61 143865.5 62 116380.5 63 91836.5 64 70936.0 65 54509.0 66 41896.0 67 32344.5 68 24784.5 69 18088.0 70 12959.5 71 9538.0 72 7106.0 73 5109.5 74 3616.5 75 2582.5 76 1750.5 77 1081.0 78 665.0 79 458.0 80 331.5 81 218.5 82 143.5 83 89.0 84 54.0 85 36.5 86 29.0 87 22.0 88 14.5 89 9.5 90 6.5 91 3.5 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007986959919536126 3 0.0026921081686828064 4 2.7926433285091354E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.0053515982632886E-4 16-17 2.3458203959476735E-4 18-19 0.0017872917302458463 20-21 7.819793965185719E-5 22-23 0.0017373088471475454 24-25 2.682098268057394E-4 26-27 0.002672147065135597 28-29 0.005617078918672027 30-31 0.002813844090504212 32-33 0.0021707735152134105 34-35 0.0023493561493465372 36-37 0.0028578923538198 38-39 0.0 40-41 5.785906307546263E-4 42-43 0.005983305409293732 44-45 0.0039282327819945406 46-47 6.218448846202693E-4 48-49 0.016147728055803258 50-51 0.010949857969942823 52-53 0.015020288515635749 54-55 0.012790903269481037 56-57 0.011229698041756666 58-59 0.017635354540912106 60-61 0.008907355743499183 62-63 0.020319566369470125 64-65 0.014846879076898436 66-67 0.0314159201397001 68-69 0.02171860751188609 70-71 0.021993164134695636 72-73 0.020135347331267456 74-75 0.010060313371379737 76-77 0.012246056214877088 78-79 0.012948030123300263 80-81 0.010150296684409239 82-83 0.004885644459068477 84-85 0.0034285214422506826 86-87 0.014050591562615964 88-89 0.0014131898335586713 90-91 2.354856829414485E-4 92-93 0.0010945199463477506 94-95 0.002763257993661135 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 276.0 20-21 822.0 22-23 1780.0 24-25 4004.0 26-27 5650.0 28-29 12742.0 30-31 27949.0 32-33 34795.0 34-35 47377.0 36-37 70814.0 38-39 83931.0 40-41 83420.0 42-43 89434.0 44-45 101344.0 46-47 99593.0 48-49 93020.0 50-51 85790.0 52-53 82064.0 54-55 87834.0 56-57 91672.0 58-59 90056.0 60-61 88364.0 62-63 86841.0 64-65 89750.0 66-67 93277.0 68-69 92610.0 70-71 89626.0 72-73 84027.0 74-75 85381.0 76-77 85954.0 78-79 91446.0 80-81 93004.0 82-83 90630.0 84-85 90595.0 86-87 96167.0 88-89 102826.0 90-91 109907.0 92-93 119230.0 94-95 148388.0 96-97 333192.0 98-99 571472.0 100-101 5115038.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.67052655593727 #Duplication Level Percentage of deduplicated Percentage of total 1 88.58607165357306 73.23457189122873 2 7.5002469497042 12.400987292632172 3 2.0737453124718144 5.143128507748546 4 0.8007956326019581 2.6480878644359507 5 0.396408041112254 1.638563074487883 6 0.21945847548529787 1.0885648635319698 7 0.13256806372805022 0.767163014302927 8 0.07412997187395133 0.49026910467171014 9 0.053286157506043846 0.39646752292505283 >10 0.1606448751100138 1.9792872816307432 >50 0.0020899689189451164 0.1139943420420038 >100 5.075196516822945E-4 0.07069482782848026 >500 4.73782627869238E-5 0.028220412533784794 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.702343988421924E-5 0.0 0.0 0.0 3 0.0 7.819401319825578E-5 0.0 0.0 0.0 4 0.0 1.340468797684385E-4 0.0 2.234114662807308E-5 0.0 5 1.117057331403654E-5 1.4521745308247502E-4 0.0 2.234114662807308E-5 0.0 6 1.117057331403654E-5 1.4521745308247502E-4 0.0 2.234114662807308E-5 0.0 7 1.117057331403654E-5 1.5638802639651156E-4 0.0 2.234114662807308E-5 0.0 8 1.117057331403654E-5 1.675585997105481E-4 0.0 2.234114662807308E-5 0.0 9 1.117057331403654E-5 3.127760527930231E-4 0.0 5.5852866570182704E-5 0.0 10-11 2.234114662807308E-5 3.351171994210962E-4 0.0 5.5852866570182704E-5 0.0 12-13 2.234114662807308E-5 3.4628777273513274E-4 0.0 6.143815322720098E-5 0.0 14-15 2.234114662807308E-5 4.524082192184799E-4 0.0 8.936458651229233E-5 0.0 16-17 2.7926433285091352E-5 4.74749365846553E-4 0.0 1.0053515982632886E-4 0.0 18-19 3.351171994210962E-5 5.417728057307723E-4 0.0 1.1729101979738367E-4 0.0 20-21 5.5852866570182704E-5 5.97625672300955E-4 0.0 1.619733130535298E-4 0.0 22-23 5.5852866570182704E-5 6.81404972156229E-4 0.0 2.457526129088039E-4 0.0 24-25 6.702343988421924E-5 7.4284312538343E-4 0.0 3.0719076613600483E-4 0.0 26-27 6.702343988421924E-5 7.595989853544847E-4 0.0 3.742142060202241E-4 0.0 28-29 7.260872654123751E-5 7.651842720115031E-4 0.0 0.0010165221715773252 0.0 30-31 9.49498731693106E-5 8.154518519246674E-4 0.0 0.0026585964487406966 0.0 32-33 1.0053515982632886E-4 8.545488585237954E-4 0.0 0.005831039269927073 0.0 34-35 1.1170573314036541E-4 9.830104516352156E-4 0.0 0.009723984069868808 0.0 36-37 1.1170573314036541E-4 0.001094716184775581 0.0 0.015622046779680102 0.0 38-39 1.5638802639651156E-4 0.0011282279047176904 0.0 0.02505001065672694 0.0 40-41 1.619733130535298E-4 0.0012734453578001656 0.0 0.03496947975959139 0.0 42-43 1.843144596816029E-4 0.00132371293771333 0.0 0.04376072095773815 0.0 44-45 2.1224089296669428E-4 0.0014801009641098417 0.0 0.0536522636273175 0.0 46-47 2.2341146628073082E-4 0.0015750508372791522 0.0 0.06439276986876363 0.0 48-49 2.2899675293774907E-4 0.0016085625572212618 0.0 0.07539019929643262 0.0 50-51 2.457526129088039E-4 0.0018263887368449743 0.0 0.08595197636485416 0.0 52-53 2.5133789956582214E-4 0.0018319740235019926 0.0 0.09634060954690814 0.0 54-55 2.569231862228404E-4 0.0018543151701300657 0.0 0.10580767043055411 0.0 56-57 2.569231862228404E-4 0.001882241603415157 0.0 0.1148558348149237 0.0 58-59 2.569231862228404E-4 0.0018934121767291935 0.0 0.12348510270001695 0.0 60-61 2.569231862228404E-4 0.001982776763241486 0.0 0.13216463816502333 0.0 62-63 2.625084728798587E-4 0.0019939473365555224 0.0 0.1399226013316217 0.0 64-65 2.68093759536877E-4 0.002189432369551162 0.0 0.14712203583251826 0.0 66-67 2.792643328509135E-4 0.0021950176562081803 0.0 0.15423769103355953 0.0 68-69 2.792643328509135E-4 0.0022285293761502897 0.0 0.16134217566128678 0.0 70-71 2.792643328509135E-4 0.0022620410960923995 0.0 0.16711736206464367 0.0 72-73 2.792643328509135E-4 0.0022843822427204724 0.0 0.171809002856539 0.0 74-75 2.792643328509135E-4 0.002368161542575746 0.0 0.17570194765648073 0.0 76-77 2.792643328509135E-4 0.002440770269116984 0.0 0.1792932869769435 0.0 78-79 2.792643328509135E-4 0.0024686967024020756 0.0 0.18167261909283328 0.0 80-81 2.792643328509135E-4 0.002474281989059094 0.0 0.18243221807818777 0.0 82-83 2.792643328509135E-4 0.0024910378490301485 0.0 0.18303542903714573 0.0 84-85 2.792643328509135E-4 0.00251896428231524 0.0 0.18319181706354223 0.0 86-87 2.792643328509135E-4 0.0025357201422862947 0.0 0.1833314492299677 0.0 88 2.792643328509135E-4 0.0025915730088564774 0.0 0.18335379037659577 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11325 0.0 40.149364 1 GTATCAA 18760 0.0 31.855347 1 ATCAACG 21525 0.0 27.052988 3 CAACGCA 21785 0.0 26.710615 5 TCAACGC 21895 0.0 26.651802 4 AACGCAG 22560 0.0 25.920809 6 TATCAAC 23065 0.0 25.57039 2 ACGCAGA 26415 0.0 22.059978 7 CGCAGAG 27130 0.0 21.417881 8 GTACATG 27295 0.0 21.200253 1 TACATGG 26980 0.0 20.913485 2 ACATGGG 27945 0.0 19.821072 3 ACCGAAC 1280 0.0 18.338514 8 GCAGAGT 31850 0.0 18.127497 9 CATGGGG 21775 0.0 17.853178 4 GAGTACT 16045 0.0 17.659002 12-13 GGACCGA 1645 0.0 17.273584 6 CAGAGTA 30300 0.0 16.717413 10-11 AGAGTAC 27710 0.0 16.645163 10-11 TATACAC 8525 0.0 15.796554 3 >>END_MODULE