##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140298_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8883178 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.95973164108611 31.0 31.0 34.0 30.0 34.0 2 32.06733750016041 33.0 31.0 34.0 30.0 34.0 3 31.798407844579945 31.0 31.0 34.0 30.0 34.0 4 35.87434857209886 37.0 35.0 37.0 35.0 37.0 5 35.80793878046798 37.0 35.0 37.0 35.0 37.0 6 35.85151744116801 37.0 35.0 37.0 35.0 37.0 7 35.835599939571175 37.0 35.0 37.0 35.0 37.0 8 35.83114342637286 37.0 35.0 37.0 35.0 37.0 9 37.601076439085205 39.0 37.0 39.0 35.0 39.0 10-11 37.505340431093465 39.0 37.0 39.0 34.5 39.0 12-13 37.45681230298436 39.0 37.0 39.0 34.0 39.0 14-15 38.69368569446655 40.0 38.0 41.0 34.0 41.0 16-17 38.62807364661611 40.0 38.0 41.0 34.0 41.0 18-19 38.62782069660205 40.0 38.0 41.0 34.0 41.0 20-21 38.69098469270459 40.0 38.0 41.0 34.0 41.0 22-23 38.647196847065246 40.0 38.0 41.0 34.0 41.0 24-25 38.55270639954462 40.0 38.0 41.0 34.0 41.0 26-27 38.39674934697497 40.0 38.0 41.0 34.0 41.0 28-29 38.26282578187988 40.0 38.0 41.0 34.0 41.0 30-31 38.13782606715043 40.0 38.0 41.0 33.0 41.0 32-33 37.94854229453513 40.0 37.0 41.0 33.0 41.0 34-35 38.04299873108472 40.0 37.0 41.0 33.0 41.0 36-37 38.00260752088171 40.0 37.0 41.0 33.0 41.0 38-39 37.960684170173195 40.0 37.0 41.0 33.0 41.0 40-41 37.901087811940506 40.0 37.0 41.0 33.0 41.0 42-43 37.93865563871561 40.0 37.0 41.0 33.0 41.0 44-45 37.973405287796595 40.0 37.0 41.0 33.0 41.0 46-47 37.91925963176646 40.0 37.0 41.0 33.0 41.0 48-49 37.827422730815016 40.0 37.0 41.0 33.0 41.0 50-51 37.72410150940968 40.0 37.0 41.0 32.5 41.0 52-53 37.45525853959674 39.5 36.0 41.0 32.0 41.0 54-55 37.395721888957056 39.0 36.0 41.0 32.0 41.0 56-57 37.23307668595943 39.0 35.5 41.0 31.0 41.0 58-59 37.06214222977599 39.0 35.0 41.0 31.0 41.0 60-61 36.91397737919512 39.0 35.0 40.0 31.0 41.0 62-63 36.670083857578874 38.0 35.0 40.0 31.0 41.0 64-65 36.314886572490224 38.0 35.0 40.0 30.0 41.0 66-67 36.07238722564083 37.0 34.5 40.0 30.0 41.0 68-69 35.78723057695069 37.0 34.0 39.5 30.0 41.0 70-71 35.51847652144295 36.5 34.0 39.0 30.0 41.0 72-73 35.22304890001605 36.0 34.0 39.0 29.0 40.5 74-75 34.898967403965614 35.5 34.0 38.5 29.0 40.0 76-77 33.6618103746041 34.5 32.0 36.5 28.0 39.0 78-79 34.29414764814478 35.0 33.5 37.0 29.0 39.0 80-81 34.22813097925105 35.0 34.0 37.0 29.0 39.0 82-83 33.95269677449709 35.0 33.0 36.0 29.0 38.5 84-85 33.715744896979466 35.0 33.0 36.0 29.0 37.0 86-87 33.509227311581206 35.0 33.0 35.5 29.0 37.0 88-89 33.33481341550463 35.0 33.0 35.0 29.0 36.5 90-91 33.199599727931286 35.0 33.0 35.0 29.0 36.0 92-93 33.171144873019436 35.0 33.0 35.0 29.0 36.0 94-95 33.16249846219961 35.0 33.0 35.0 29.0 36.0 96-97 33.15218198737408 35.0 33.0 35.0 29.0 35.0 98-99 33.26694118327461 35.0 33.0 35.0 29.0 35.0 100 32.11208616076232 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 12.0 20 49.0 21 294.0 22 1449.0 23 4796.0 24 12669.0 25 26942.0 26 49982.0 27 78573.0 28 113798.0 29 151770.0 30 193974.0 31 241920.0 32 298594.0 33 377940.0 34 502667.0 35 688403.0 36 1047359.0 37 1753525.0 38 2174495.0 39 1125392.0 40 38571.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.337007994211085 20.443235517739257 14.053585327233115 24.166171160816546 2 14.888679962618435 21.159188796158 40.813083953272816 23.13904728795075 3 18.287565281011034 25.86677636004194 30.55297101422355 25.292687344723475 4 12.67032971115278 17.86517130937611 38.37070431972302 31.09379465974809 5 13.16006501276908 37.915338407043066 35.732572284378406 13.192024295809452 6 30.525246707878644 37.70586382486088 18.485512729791072 13.283376737469405 7 26.999875495008656 32.39714435531968 22.76213535291086 17.8408447967608 8 24.80102278711515 36.825345613923304 20.925529129327362 17.44810246963418 9 25.46272291290347 16.71998467215224 21.146778776694557 36.67051363824974 10-11 24.44962827492593 26.72438287288626 28.64210308517965 20.183885767008157 12-13 25.01613724277505 24.058613932986596 28.961774716210797 21.963474108027555 14-15 22.07569043909384 25.675306544584114 26.3278945651099 25.92110845121215 16-17 21.84039535946485 28.947519949693557 27.08574367681128 22.126341014030317 18-19 21.83723327147941 28.17090866169415 28.586234498595104 21.40562356823134 20-21 22.55167922767117 27.23590298765086 28.538745200934134 21.67367258374383 22-23 22.316232185600764 27.318748550416245 28.37337562177292 21.991643642210075 24-25 22.134986316637452 27.443814541858902 28.456090012724744 21.965109128778902 26-27 22.13143039655344 27.6091314827844 28.344099129066187 21.915338991595977 28-29 21.929377918918913 27.633862402125807 28.387541330798143 22.049218348157137 30-31 22.260538521038303 27.425005233548994 28.415536618211938 21.898919627200765 32-33 22.0179954694415 27.64861317704551 28.293634068558326 22.03975728495466 34-35 22.064626748519952 27.70004619429306 28.47587036211913 21.759456695067854 36-37 22.244880700197285 27.583125098528072 28.215969069347807 21.956025131926836 38-39 22.0350640811822 27.621040615941105 28.362591250689288 21.981304052187404 40-41 22.206306724160953 27.46483910330874 28.287535699382243 22.041318473148063 42-43 22.166149833799693 27.55583438186633 28.178346072226706 22.09966971210727 44-45 22.14084102902179 27.702450901636087 28.028115323574625 22.128592745767495 46-47 22.264870590489764 27.613993680052257 27.726675151304242 22.39446057815374 48-49 22.198996442581045 27.67475847897601 27.81494387611926 22.311301202323687 50-51 22.143293226905715 27.824465263971078 27.739554045151348 22.29268746397186 52-53 22.247463325807406 27.80022286969795 27.72746538002006 22.224848424474583 54-55 22.197457096262394 27.75454684838607 27.67737328997652 22.370622765375014 56-57 22.298982898928788 27.901072325306618 27.532262346949167 22.26768242881543 58-59 22.16903023152068 28.04652412374274 27.71744379336829 22.06700185136829 60-61 22.35143462477554 28.073746560388596 27.492377950314573 22.082440864521296 62-63 22.282935924067175 28.182290727041643 27.427006934538806 22.10776641435238 64-65 22.223032401651206 28.094116518816627 27.459184624414796 22.223666455117367 66-67 22.263492593827813 28.011166731744215 27.42738739830004 22.29795327612793 68-69 22.218369600868655 27.935438637520004 27.556289267893895 22.28990249371744 70-71 22.2192125718067 27.752026052142774 27.574656813672377 22.454104562378145 72-73 22.31489821741124 27.79176639663163 27.53429698108415 22.359038404872976 74-75 22.142575514839834 27.910408383043244 27.538904598719306 22.40811150339761 76-77 22.224224561455227 27.84175460286255 27.51374734228443 22.420273493397797 78-79 22.215156598080547 27.79919736836538 27.489599201255377 22.496046832298696 80-81 22.208485603521623 27.876074377337982 27.529074847567596 22.3863651715728 82-83 22.204519071392482 27.85563558763019 27.664513666265883 22.275331674711445 84-85 22.32684183605671 27.854498303460012 27.54250517026029 22.276154690222985 86-87 22.180925980843224 27.870105981208816 27.611841651054682 22.337126386893278 88-89 22.222744977722314 27.804177356229104 27.602836457721207 22.370241208327375 90-91 22.256822380612327 27.89537161192836 27.57683220098574 22.270973806473567 92-93 22.251742675852196 27.87623369018911 27.61983754424736 22.252186089711333 94-95 22.084992118097563 27.927144445128114 27.7090093027605 22.27885413401382 96-97 22.100439369828333 28.062666766859984 27.778145430043132 22.058748433268555 98-99 23.209422688946628 30.06549563499008 27.936336647600267 18.788745028463023 100 22.24404527395262 31.109104250373658 21.60611769586759 25.04073277980614 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1544.0 1 1365.5 2 1803.5 3 2587.0 4 3416.0 5 5535.0 6 7502.0 7 8811.5 8 9686.5 9 9536.0 10 8664.0 11 7704.0 12 8094.0 13 10662.0 14 16825.5 15 25376.0 16 32715.5 17 37670.0 18 39949.5 19 39504.0 20 37542.0 21 35538.5 22 35157.0 23 38059.5 24 44850.0 25 55964.5 26 70623.5 27 86926.0 28 105150.5 29 126380.5 30 149208.5 31 170964.0 32 192850.5 33 214817.0 34 236113.0 35 256989.0 36 279178.0 37 299530.5 38 315573.5 39 329135.0 40 340851.5 41 352322.0 42 361641.0 43 369846.5 44 379226.5 45 390267.5 46 397639.5 47 399898.5 48 397488.5 49 390525.0 50 381725.0 51 369545.5 52 352994.0 53 333183.5 54 313390.0 55 291668.5 56 268470.0 57 243139.5 58 215004.0 59 185836.5 60 155488.5 61 127407.0 62 102852.0 63 81292.0 64 62251.5 65 47335.0 66 35928.0 67 27317.0 68 20980.5 69 15508.0 70 11377.5 71 8464.0 72 6087.5 73 4263.0 74 3010.0 75 2049.0 76 1401.5 77 905.5 78 568.0 79 369.0 80 252.0 81 179.0 82 131.5 83 93.5 84 62.0 85 41.5 86 29.5 87 22.5 88 14.5 89 10.5 90 7.0 91 3.0 92 2.5 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008161493555572117 3 0.00264544963525441 4 4.390320671273276E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 9.568647616877655E-5 16-17 2.4203049854455241E-4 18-19 0.0017167279547927554 20-21 6.754585476999539E-5 22-23 0.0017113239657861306 24-25 2.9279376547478394E-4 26-27 0.002360213802699307 28-29 0.005552557550286019 30-31 0.0027218796374659615 32-33 0.0019994188657914158 34-35 0.0022402934170285727 36-37 0.002693099524264827 38-39 0.0 40-41 6.861863819450639E-4 42-43 0.005874178385241764 44-45 0.0036043987418277073 46-47 6.115808958436962E-4 48-49 0.015344729255256814 50-51 0.010568362879718981 52-53 0.014420720403760374 54-55 0.011931987421811124 56-57 0.010590260181284793 58-59 0.01634307610157538 60-61 0.008506258946669374 62-63 0.019069186010897386 64-65 0.014046273854396602 66-67 0.029705573326921295 68-69 0.020844471019284484 70-71 0.020295610635968162 72-73 0.01905611614048188 74-75 0.009652884243985126 76-77 0.01140093143271516 78-79 0.012175901767864927 80-81 0.009318016344657665 82-83 0.004605844551863465 84-85 0.0029363548076512466 86-87 0.013526625360738332 88-89 0.0011570301381064888 90-91 1.6346504802019308E-4 92-93 0.0010451788867213744 94-95 0.0026081222093395163 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 208.0 20-21 671.0 22-23 1492.0 24-25 3487.0 26-27 5182.0 28-29 11972.0 30-31 25337.0 32-33 31820.0 34-35 43177.0 36-37 65502.0 38-39 77430.0 40-41 76982.0 42-43 82672.0 44-45 94489.0 46-47 93248.0 48-49 87933.0 50-51 80555.0 52-53 76809.0 54-55 84134.0 56-57 88974.0 58-59 87792.0 60-61 86303.0 62-63 84201.0 64-65 87736.0 66-67 91813.0 68-69 89531.0 70-71 85432.0 72-73 80500.0 74-75 81411.0 76-77 81767.0 78-79 87617.0 80-81 89393.0 82-83 87177.0 84-85 87432.0 86-87 92967.0 88-89 100116.0 90-91 106956.0 92-93 117132.0 94-95 147322.0 96-97 332782.0 98-99 577896.0 100-101 5167828.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.43812369750802 #Duplication Level Percentage of deduplicated Percentage of total 1 89.41024295042448 75.49633154072185 2 7.192382103233575 12.146224994251588 3 1.8791796760497594 4.760232178083979 4 0.6912465498219603 2.3347024671736927 5 0.3273338015850419 1.3819726014306655 6 0.16902200745228654 0.8563140703714377 7 0.09900336661943625 0.5851760961957186 8 0.060314067562147494 0.4074245358009973 9 0.04341956636065749 0.3299640043728019 >10 0.12588866097127047 1.5251573713789 >50 0.001390291567914734 0.0775748506541115 >100 5.337518505493667E-4 0.07608725938565576 >500 4.320650092731835E-5 0.022838030178634068 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1257232490444298E-5 0.0 2 0.0 3.377169747133289E-5 0.0 1.1257232490444298E-5 0.0 3 0.0 3.377169747133289E-5 0.0 1.1257232490444298E-5 0.0 4 0.0 5.628616245222149E-5 0.0 1.1257232490444298E-5 0.0 5 0.0 5.628616245222149E-5 0.0 1.1257232490444298E-5 0.0 6 0.0 5.628616245222149E-5 0.0 1.1257232490444298E-5 0.0 7 0.0 5.628616245222149E-5 0.0 2.2514464980888596E-5 0.0 8 0.0 5.628616245222149E-5 0.0 4.502892996177719E-5 0.0 9 0.0 1.6885848735666447E-4 0.0 6.754339494266578E-5 0.0 10-11 0.0 1.6885848735666447E-4 0.0 7.317201118788793E-5 0.0 12-13 0.0 1.6885848735666447E-4 0.0 9.005785992355438E-5 0.0 14-15 0.0 2.2514464980888596E-4 0.0 1.0131509241399868E-4 0.0 16-17 1.1257232490444298E-5 2.2514464980888596E-4 0.0 1.1257232490444298E-4 0.0 18-19 1.1257232490444298E-5 2.5891634728021884E-4 0.0 1.2945817364010942E-4 0.0 20-21 1.1257232490444298E-5 3.095738934872182E-4 0.0 1.4071540613055372E-4 0.0 22-23 1.1257232490444298E-5 3.320883584681068E-4 0.0 1.8011571984710877E-4 0.0 24-25 1.1257232490444298E-5 3.7148867218466183E-4 0.0 2.3640188229933026E-4 0.0 26-27 1.1257232490444298E-5 3.7148867218466183E-4 0.0 2.8143081226110744E-4 0.0 28-29 1.1257232490444298E-5 3.77117288429884E-4 0.0 7.035770306527687E-4 0.0 30-31 1.6885848735666446E-5 3.8274590467510613E-4 0.0 0.002369647439238525 0.0 32-33 2.8143081226110742E-5 3.9400313716555043E-4 0.0 0.0055667014665247054 0.0 34-35 3.377169747133289E-5 4.559179158629941E-4 0.0 0.009422303594501878 0.0 36-37 3.377169747133289E-5 5.178326945604377E-4 0.0 0.015231035559571136 0.0 38-39 3.377169747133289E-5 5.29089927050882E-4 0.0 0.024276221865643127 0.0 40-41 3.377169747133289E-5 6.078905544839921E-4 0.0 0.03365349653018323 0.0 42-43 3.377169747133289E-5 6.360336357101029E-4 0.0 0.04237785171027756 0.0 44-45 4.502892996177719E-5 7.373487281241015E-4 0.0 0.05189021316470299 0.0 46-47 5.628616245222149E-5 8.105207393119895E-4 0.0 0.06180783498878442 0.0 48-49 5.628616245222149E-5 8.161493555572117E-4 0.0 0.0720181448576174 0.0 50-51 5.628616245222149E-5 9.230930642164325E-4 0.0 0.0822847408889026 0.0 52-53 5.628616245222149E-5 9.456075291973211E-4 0.0 0.09147064260110514 0.0 54-55 6.754339494266578E-5 9.456075291973211E-4 0.0 0.10035822765231092 0.0 56-57 6.754339494266578E-5 9.456075291973211E-4 0.0 0.10881240925263458 0.0 58-59 6.754339494266578E-5 9.568647616877654E-4 0.0 0.11685007325081181 0.0 60-61 6.754339494266578E-5 9.681219941782097E-4 0.0 0.12481456523780116 0.0 62-63 6.754339494266578E-5 0.0010018936916495426 0.0 0.13225559591398484 0.0 64-65 6.754339494266578E-5 0.0011032087840635411 0.0 0.13937579546419088 0.0 66-67 6.754339494266578E-5 0.0011088374003087632 0.0 0.146321507910795 0.0 68-69 6.754339494266578E-5 0.0011426090977800962 0.0 0.1533685354498131 0.0 70-71 6.754339494266578E-5 0.0011594949465157625 0.0 0.1593404972859938 0.0 72-73 6.754339494266578E-5 0.001170752179006207 0.0 0.16384339028217154 0.0 74-75 6.754339494266578E-5 0.0011988952602323176 0.0 0.16760893455022516 0.0 76-77 6.754339494266578E-5 0.0012439241901940948 0.0 0.17114370555222466 0.0 78-79 6.754339494266578E-5 0.0012608100389297613 0.0 0.17347958129399188 0.0 80-81 6.754339494266578E-5 0.0012608100389297613 0.0 0.17426195895207774 0.0 82-83 6.754339494266578E-5 0.0012664386551749836 0.0 0.1747572771816573 0.0 84-85 6.754339494266578E-5 0.0012720672714202057 0.0 0.17491487843652348 0.0 86-87 6.754339494266578E-5 0.00128332450391065 0.0 0.1750387079939184 0.0 88 6.754339494266578E-5 0.0013846395963246487 0.0 0.17504996522640884 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9670 0.0 42.992374 1 GTATCAA 16445 0.0 33.749218 1 TCAACGC 19005 0.0 28.34731 4 ATCAACG 19120 0.0 28.19975 3 CAACGCA 19380 0.0 27.841557 5 AACGCAG 20105 0.0 26.961246 6 TATCAAC 20360 0.0 26.791384 2 ACGCAGA 23400 0.0 23.076231 7 CGCAGAG 23945 0.0 22.602926 8 GTACATG 25655 0.0 21.698065 1 CTTATAC 6640 0.0 21.411299 1 TACATGG 25470 0.0 21.123348 2 ACATGGG 26155 0.0 20.13941 3 GCAGAGT 28995 0.0 18.55188 9 CATGGGG 19825 0.0 17.956278 4 GAGTACT 15145 0.0 17.554094 12-13 GTGGTAT 5845 0.0 17.303036 1 TATACAC 10195 0.0 16.788763 3 CAGAGTA 28105 0.0 16.750814 10-11 AGAGTAC 25570 0.0 16.70972 10-11 >>END_MODULE