##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140297_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10056554 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.97204221247159 31.0 31.0 34.0 30.0 34.0 2 32.079265621205835 33.0 31.0 34.0 30.0 34.0 3 31.816174208381916 31.0 31.0 34.0 30.0 34.0 4 35.88554687818511 37.0 35.0 37.0 35.0 37.0 5 35.81821466876228 37.0 35.0 37.0 35.0 37.0 6 35.85838926534875 37.0 35.0 37.0 35.0 37.0 7 35.84137697664627 37.0 35.0 37.0 35.0 37.0 8 35.834922081659386 37.0 35.0 37.0 35.0 37.0 9 37.60980441212765 39.0 37.0 39.0 35.0 39.0 10-11 37.51397252975522 39.0 37.0 39.0 34.5 39.0 12-13 37.471299065266294 39.0 37.0 39.0 34.0 39.0 14-15 38.72070209139234 40.0 38.0 41.0 34.0 41.0 16-17 38.65932187109024 40.0 38.0 41.0 34.0 41.0 18-19 38.65214605321067 40.0 38.0 41.0 34.0 41.0 20-21 38.712621675908146 40.0 38.0 41.0 34.0 41.0 22-23 38.67373405653536 40.0 38.0 41.0 34.0 41.0 24-25 38.58501099367433 40.0 38.0 41.0 34.0 41.0 26-27 38.43993324070344 40.0 38.0 41.0 34.0 41.0 28-29 38.31157196113678 40.0 38.0 41.0 34.0 41.0 30-31 38.18991331690807 40.0 38.0 41.0 33.5 41.0 32-33 38.008234924629136 40.0 37.0 41.0 33.0 41.0 34-35 38.09896436448392 40.0 38.0 41.0 33.0 41.0 36-37 38.05809313002564 40.0 37.5 41.0 33.0 41.0 38-39 38.02539972484622 40.0 37.0 41.0 33.0 41.0 40-41 37.9659166483639 40.0 37.0 41.0 33.0 41.0 42-43 38.000285927656805 40.0 37.0 41.0 33.0 41.0 44-45 38.032070873690394 40.0 37.0 41.0 33.0 41.0 46-47 37.98254141417759 40.0 37.0 41.0 33.0 41.0 48-49 37.889484315882534 40.0 37.0 41.0 33.0 41.0 50-51 37.79297413805867 40.0 37.0 41.0 33.0 41.0 52-53 37.52555374996199 40.0 36.0 41.0 32.0 41.0 54-55 37.4720908656475 39.0 36.0 41.0 32.0 41.0 56-57 37.305927619667266 39.0 36.0 41.0 31.5 41.0 58-59 37.13508683554707 39.0 35.0 41.0 31.0 41.0 60-61 36.98681192415782 39.0 35.0 40.5 31.0 41.0 62-63 36.73979891664644 38.5 35.0 40.0 31.0 41.0 64-65 36.38130655433699 38.0 35.0 40.0 30.5 41.0 66-67 36.14051916362534 37.5 35.0 40.0 30.0 41.0 68-69 35.853215893767576 37.0 34.0 39.5 30.0 41.0 70-71 35.58000428136158 36.5 34.0 39.0 30.0 41.0 72-73 35.28181611750723 36.0 34.0 39.0 30.0 40.5 74-75 34.95823448082943 35.5 34.0 38.5 29.0 40.0 76-77 33.715791911805816 34.5 32.5 36.5 28.5 39.0 78-79 34.335179835220806 35.0 33.5 37.0 29.0 39.0 80-81 34.266910109324 35.0 34.0 37.0 29.0 39.0 82-83 33.990621512657256 35.0 33.5 36.0 29.0 38.0 84-85 33.75027219215124 35.0 33.0 36.0 29.0 37.0 86-87 33.54859203223887 35.0 33.0 35.5 29.0 37.0 88-89 33.37934332097254 35.0 33.0 35.0 29.0 36.5 90-91 33.24885082442767 35.0 33.0 35.0 29.0 36.0 92-93 33.2184215513339 35.0 33.0 35.0 29.0 36.0 94-95 33.211558909891814 35.0 33.0 35.0 29.0 36.0 96-97 33.201293357151314 35.0 33.0 35.0 29.0 35.0 98-99 33.30802571546982 35.0 33.0 35.0 29.5 35.0 100 32.19856800527387 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 13.0 20 56.0 21 301.0 22 1522.0 23 5085.0 24 13581.0 25 29453.0 26 53830.0 27 85244.0 28 122415.0 29 165326.0 30 211213.0 31 264709.0 32 327567.0 33 415310.0 34 552850.0 35 758277.0 36 1160103.0 37 1955497.0 38 2490046.0 39 1392207.0 40 51946.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.51949067245102 20.47076960955015 13.68845630421713 24.3212834137817 2 15.10005961760206 21.19994968055606 40.46335655552467 23.236634146317208 3 18.31196448397299 25.70538582511171 30.552663229685255 25.42998646123004 4 12.729658518608897 17.624220815438203 38.52052208584949 31.125598580103407 5 13.20309123781367 37.84417604678501 35.828018225726225 13.12471448967509 6 30.76170028023516 37.674326613271305 18.40514156240796 13.158831544085578 7 27.12119877246222 32.33315308603723 22.88960015528182 17.65604798621874 8 24.853135577057508 36.67675826132888 21.011322566358217 17.458783595255394 9 25.5726862302932 16.524308426126883 21.201139078057953 36.701866265521964 10-11 24.517021436965386 26.614618685486104 28.804722770841785 20.06363710670673 12-13 25.027986723881757 23.97110381945943 29.02510144130882 21.97580801534999 14-15 22.04242719753291 25.640079452738462 26.371269972503974 25.946223377224655 16-17 21.901224424004536 28.767184925567474 27.147773567299517 22.18381708312847 18-19 21.88806632682284 28.154453926978128 28.558550469035392 21.398929277163642 20-21 22.598821037005333 27.319660109889103 28.45346578684314 21.628053066262424 22-23 22.369612380680483 27.27182175943204 28.231062327537977 22.1275035323495 24-25 22.19523300380567 27.352928185677243 28.36935535985153 22.082483450665556 26-27 22.17898240203565 27.569119078702887 28.223292895150067 22.0286056241114 28-29 22.076967742260003 27.656416130827242 28.222687478805845 22.043928648106903 30-31 22.38819026255848 27.456224367885472 28.19039329829706 21.965192071258986 32-33 22.084903833231486 27.635355410160596 28.138200786446667 22.141539970161254 34-35 22.21067494302327 27.662914619546125 28.22828147886935 21.898128958561255 36-37 22.28227811775448 27.551008736256755 28.08456267344337 22.082150472545397 38-39 22.165422930742302 27.6661278395751 28.124383705979078 22.044065523703512 40-41 22.33225175422336 27.52595704738138 28.074982308022374 22.066808890372887 42-43 22.249523359464966 27.587928626595033 27.947645825524415 22.214902188415586 44-45 22.280803613109555 27.72214601685818 27.795388571177625 22.201661798854637 46-47 22.321087989744264 27.665278829506555 27.571394576171954 22.442238604577224 48-49 22.298557460180483 27.704512210425484 27.648042160844906 22.348888168549127 50-51 22.217868668463122 27.795284931801916 27.601206457400867 22.385639942334095 52-53 22.334971345382513 27.786141323722287 27.562768507500383 22.316118823394817 54-55 22.351448075519365 27.68836784027408 27.543029968280266 22.417154115926287 56-57 22.399489571378176 27.78737992151968 27.433881407687217 22.379249099414935 58-59 22.291639852088878 27.93921362328652 27.549425087818218 22.21972143680638 60-61 22.497245274541747 27.884382439584403 27.413430448659177 22.20494183721468 62-63 22.424387806870943 27.979608971714537 27.35123015889777 22.24477306251675 64-65 22.311660469992532 27.940855336959075 27.406292002104628 22.341192190943772 66-67 22.37542492799426 27.852191761722985 27.3363837005206 22.435999609762153 68-69 22.298866181451068 27.831485563800936 27.434223392280227 22.43542486246777 70-71 22.297155519360988 27.647496677464524 27.503368849048513 22.551978954125975 72-73 22.39969111285189 27.664639526996854 27.500313365586425 22.435355994564826 74-75 22.25841289631458 27.806459277512445 27.447667521116703 22.487460305056267 76-77 22.347124009606308 27.761793638901434 27.351408873516974 22.539673477975285 78-79 22.274511165118245 27.74684490191257 27.382663995647015 22.59597993732217 80-81 22.251486918296322 27.803773587890706 27.457213813135773 22.4875256806772 82-83 22.314363386429036 27.74061553931899 27.571667165887526 22.373353908364447 84-85 22.454147437691613 27.766484032085536 27.408578292575502 22.370790237647352 86-87 22.24163252813745 27.818616792303057 27.498351331980636 22.44139934757885 88-89 22.34957753011217 27.741168892763646 27.476198284009186 22.433055293115 90-91 22.34955178787614 27.77704600320406 27.499674611084718 22.37372759783508 92-93 22.37604624768187 27.758432144458205 27.519762405943847 22.345759201916078 94-95 22.208730564660968 27.837850259497454 27.576801094412918 22.37661808142866 96-97 22.19152321657716 27.98941495176085 27.648876003992207 22.17018582766979 98-99 23.325430432175008 29.914106749499286 27.84696583087736 18.913496987448347 100 29.922695445780263 41.375995436145665 28.70130911807407 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1371.0 1 1242.0 2 1731.0 3 2512.0 4 3386.0 5 5578.0 6 7487.0 7 8643.5 8 9383.5 9 9175.0 10 8350.5 11 7463.5 12 7896.0 13 10576.0 14 16816.5 15 25627.5 16 33463.0 17 38683.5 18 40931.0 19 41031.5 20 40064.0 21 38819.0 22 39143.5 23 42722.5 24 50550.5 25 62468.0 26 78594.5 27 97761.0 28 118908.0 29 144284.5 30 171139.0 31 196014.5 32 221606.0 33 248056.0 34 274008.5 35 300070.0 36 325571.0 37 349410.5 38 368907.5 39 383756.0 40 398110.0 41 412595.0 42 424656.5 43 434452.0 44 444033.0 45 454503.0 46 461320.5 47 464812.5 48 462937.5 49 452684.5 50 442470.0 51 430186.5 52 410177.0 53 385886.0 54 360499.0 55 334981.0 56 309402.5 57 280330.0 58 247541.5 59 211703.0 60 175578.0 61 142838.0 62 114396.0 63 89482.5 64 67919.5 65 51619.5 66 38788.0 67 29624.0 68 22708.0 69 16649.5 70 12434.5 71 9260.5 72 6670.5 73 4861.5 74 3503.0 75 2403.0 76 1626.5 77 1049.0 78 685.5 79 469.0 80 343.5 81 233.0 82 167.0 83 114.5 84 68.5 85 44.0 86 32.5 87 27.0 88 17.5 89 10.5 90 9.0 91 7.0 92 4.5 93 2.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007945067465455861 3 0.002475997245179611 4 4.6735690973269775E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 9.446575835022613E-5 16-17 2.933410390875443E-4 18-19 0.0016904398862672043 20-21 3.4805231663870565E-5 22-23 0.001770308182309718 24-25 2.2382735728382217E-4 26-27 0.002756665732186839 28-29 0.005811634324199556 30-31 0.00283926879397592 32-33 0.002082940695674153 34-35 0.002298227332500842 36-37 0.0027937425430608342 38-39 0.0 40-41 6.345700777405096E-4 42-43 0.006181597509306145 44-45 0.003990671633726141 46-47 6.565662577575572E-4 48-49 0.016550783265953148 50-51 0.011102242800638321 52-53 0.015318436135770858 54-55 0.013275797427870124 56-57 0.011445103819645069 58-59 0.017471272579558977 60-61 0.00877401306551383 62-63 0.020417130001397703 64-65 0.014912066889643225 66-67 0.03175988994073732 68-69 0.02208657107233136 70-71 0.022132986465910293 72-73 0.019504922663513193 74-75 0.009472821045366328 76-77 0.012519471883523758 78-79 0.01270607399731528 80-81 0.010018794467463503 82-83 0.005228173678592474 84-85 0.00309172832495041 86-87 0.013814975102772957 88-89 0.0011252317994979509 90-91 2.7722845472859334E-4 92-93 0.0010785662394579198 94-95 0.0027191112289392644 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 376.0 20-21 1049.0 22-23 1976.0 24-25 3613.0 26-27 6329.0 28-29 15299.0 30-31 32743.0 32-33 40267.0 34-35 56053.0 36-37 84858.0 38-39 98810.0 40-41 97378.0 42-43 104483.0 44-45 116922.0 46-47 115244.0 48-49 109037.0 50-51 100083.0 52-53 97784.0 54-55 104681.0 56-57 108598.0 58-59 106615.0 60-61 104504.0 62-63 101234.0 64-65 105441.0 66-67 109463.0 68-69 108312.0 70-71 104948.0 72-73 99404.0 74-75 100485.0 76-77 100684.0 78-79 107068.0 80-81 107646.0 82-83 104937.0 84-85 105406.0 86-87 111318.0 88-89 118356.0 90-91 125267.0 92-93 134519.0 94-95 167069.0 96-97 367211.0 98-99 2057102.0 100-101 4213982.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.92724919472457 #Duplication Level Percentage of deduplicated Percentage of total 1 89.24654717388441 74.90217204431337 2 7.259294427272596 12.185052247511651 3 1.9051297030368632 4.796768860051393 4 0.7275164587687881 2.4423382051340656 5 0.3320281207572369 1.3933103415224362 6 0.1799299868839512 0.9060617308087736 7 0.09794252401103554 0.5754032633604131 8 0.06540697377182286 0.43915419094564734 9 0.03950857113326214 0.29842611253459134 >10 0.1435027706835291 1.8198663825488002 >50 0.0026157021729404355 0.1480076962144833 >100 5.372000769608879E-4 0.07262668724923212 >500 4.03875466332131E-5 0.02081223780510531 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.943764036865909E-6 2 0.0 9.943764036865909E-6 0.0 0.0 9.943764036865909E-6 3 0.0 9.943764036865909E-6 0.0 2.9831292110597727E-5 9.943764036865909E-6 4 0.0 4.9718820184329545E-5 0.0 2.9831292110597727E-5 2.9831292110597727E-5 5 0.0 4.9718820184329545E-5 0.0 2.9831292110597727E-5 2.9831292110597727E-5 6 1.8893151670045227E-4 4.9718820184329545E-5 0.0 2.9831292110597727E-5 3.9775056147463636E-5 7 1.8893151670045227E-4 4.9718820184329545E-5 0.0 5.9662584221195454E-5 3.9775056147463636E-5 8 1.8893151670045227E-4 5.9662584221195454E-5 0.0 6.960634825806136E-5 5.9662584221195454E-5 9 1.8893151670045227E-4 1.1932516844239091E-4 0.0 9.943764036865909E-5 6.960634825806136E-5 10-11 2.1876280881104999E-4 1.1932516844239091E-4 0.0 9.943764036865909E-5 6.960634825806136E-5 12-13 2.485941009216477E-4 1.1932516844239091E-4 0.0 1.1932516844239091E-4 6.960634825806136E-5 14-15 2.5853786495851365E-4 1.4915646055298863E-4 0.0 1.2926893247925682E-4 1.392126965161227E-4 16-17 4.971882018432954E-4 1.4915646055298863E-4 0.0 1.5910022458985454E-4 2.3865033688478182E-4 18-19 4.971882018432954E-4 1.4915646055298863E-4 0.0 1.8395963468201932E-4 2.3865033688478182E-4 20-21 4.971882018432954E-4 1.4915646055298863E-4 0.0 2.5853786495851365E-4 2.3865033688478182E-4 22-23 5.021600838617283E-4 1.6904398862672043E-4 0.0 3.3808797725344087E-4 2.635097469769466E-4 24-25 5.071319658801613E-4 2.0384716275575113E-4 0.0 3.977505614746363E-4 3.2317233119814203E-4 26-27 5.170757299170273E-4 2.1876280881104999E-4 0.0 5.319913759723261E-4 3.28144213216575E-4 28-29 5.170757299170273E-4 2.1876280881104999E-4 0.0 8.999106453363647E-4 3.331160952350079E-4 30-31 5.220476119354603E-4 2.485941009216477E-4 0.0 0.002908550980783278 3.5300362330873975E-4 32-33 5.270194939538932E-4 2.485941009216477E-4 0.0 0.006224796287078059 3.878067974377704E-4 34-35 5.46907022027625E-4 3.082566851428432E-4 0.0 0.010311683306229946 3.9775056147463636E-4 36-37 5.46907022027625E-4 3.6791926936403864E-4 0.0 0.01716293672763056 3.9775056147463636E-4 38-39 5.46907022027625E-4 3.6791926936403864E-4 0.0 0.02678352843329832 4.027224434930693E-4 40-41 5.46907022027625E-4 3.878067974377704E-4 0.0 0.03683170199255133 4.1763808954836814E-4 42-43 5.46907022027625E-4 3.977505614746363E-4 0.0 0.04689479119785962 4.275818535852341E-4 44-45 5.618226680829239E-4 4.3752561762209997E-4 0.0 0.05741529354886375 4.424974996405329E-4 46-47 5.767383141382227E-4 4.673569097326977E-4 0.0 0.0685871124442826 4.7730067376956363E-4 48-49 5.817101961566556E-4 4.673569097326977E-4 0.0 0.07940095583437429 5.170757299170273E-4 50-51 6.364008983594182E-4 5.270194939538932E-4 0.0 0.09000598017969177 5.170757299170273E-4 52-53 6.662321904700158E-4 5.369632579907591E-4 0.0 0.10027291654775583 5.369632579907591E-4 54-55 6.662321904700158E-4 5.419351400091921E-4 0.0 0.1100923835341609 5.717664321197897E-4 56-57 6.761759545068817E-4 5.46907022027625E-4 0.0 0.11916606821780104 5.966258422119545E-4 58-59 6.761759545068817E-4 5.46907022027625E-4 0.0 0.1276381551772108 6.115414882672534E-4 60-61 7.308666567096443E-4 5.46907022027625E-4 0.0 0.13629420177130258 6.264571343225523E-4 62-63 8.352761790967363E-4 5.518789040460579E-4 0.0 0.14486572637108097 6.264571343225523E-4 64-65 8.352761790967363E-4 6.165133702856863E-4 0.0 0.1529251471229608 6.314290163409852E-4 66-67 8.501918251520352E-4 6.463446623962841E-4 0.0 0.16053212661116323 6.413727803778512E-4 68-69 8.601355891889012E-4 6.662321904700158E-4 0.0 0.168074471633126 6.463446623962841E-4 70-71 8.849949992810659E-4 6.861197185437477E-4 0.0 0.17429926792020406 6.761759545068817E-4 72-73 0.0010341514598340546 7.010353645990465E-4 0.0 0.17988766330892272 7.65669830838675E-4 74-75 0.0010440952238709204 7.109791286359125E-4 0.0 0.18406901608642484 7.65669830838675E-4 76-77 0.0010490671058893534 7.358385387280773E-4 0.0 0.18794708406080252 7.805854768939738E-4 78-79 0.0010540389879077864 7.557260668018091E-4 0.0 0.1904877157722218 7.955011229492727E-4 80-81 0.0010540389879077864 7.557260668018091E-4 0.0 0.19126830124911576 8.104167690045716E-4 82-83 0.0010540389879077864 7.557260668018091E-4 0.0 0.19184006768123554 8.352761790967363E-4 84-85 0.0010590108699262192 7.557260668018091E-4 0.0 0.1920737461361019 8.352761790967363E-4 86-87 0.0010739265159815181 7.557260668018091E-4 0.0 0.19213340872032308 8.352761790967363E-4 88 0.0011137015721289817 7.955011229492727E-4 0.0 0.19214335248435996 8.452199431336023E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12320 0.0 34.8083 1 GTATCAA 19325 0.0 28.790993 1 ATCAACG 21075 0.0 25.35079 3 TCAACGC 21170 0.0 25.197535 4 CAACGCA 21460 0.0 24.818928 5 AACGCAG 22050 0.0 24.15484 6 TATCAAC 23590 0.0 23.169756 2 GTACATG 27800 0.0 20.572681 1 ACGCAGA 25920 0.0 20.56416 7 CGCAGAG 26440 0.0 20.15972 8 TACATGG 27455 0.0 20.086697 2 ACATGGG 27685 0.0 19.41622 3 CGTCGAA 525 2.7785245E-7 18.562922 94 CATGGGG 20895 0.0 17.234627 4 GCAGAGT 32060 0.0 16.651295 9 GAGTACT 15810 0.0 16.430996 12-13 AGAGTAC 27350 0.0 15.999416 10-11 CAGAGTA 29835 0.0 15.749173 10-11 CTCGATA 1065 3.6379788E-12 15.556252 94 ATGGGGG 14040 0.0 14.906346 5 >>END_MODULE