##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140296_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1955548 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.246740044222896 25.0 18.0 31.0 18.0 33.0 2 30.91590745918791 32.0 30.0 33.0 27.0 33.0 3 31.12285967923058 33.0 31.0 33.0 28.0 33.0 4 32.24511287884521 33.0 33.0 33.0 31.0 34.0 5 32.62408900216205 33.0 33.0 34.0 31.0 34.0 6 36.52611339634721 38.0 37.0 38.0 34.0 38.0 7 36.81466780667107 38.0 38.0 38.0 35.0 38.0 8 36.82829416613655 38.0 38.0 38.0 35.0 38.0 9 37.17197276671296 38.0 38.0 38.0 36.0 38.0 10-11 37.220536903210764 38.0 38.0 38.0 36.0 38.0 12-13 37.27616708973648 38.0 38.0 38.0 36.5 38.0 14-15 37.27052877249753 38.0 38.0 38.0 36.5 38.0 16-17 37.27653527297719 38.0 38.0 38.0 37.0 38.0 18-19 37.30872036891961 38.0 38.0 38.0 37.0 38.0 20-21 37.28806979234122 38.0 38.0 38.0 37.0 38.0 22-23 37.319142170763385 38.0 38.0 38.0 37.0 38.0 24-25 37.34650713115095 38.0 38.0 38.0 37.0 38.0 26-27 37.32767988716609 38.0 38.0 38.0 37.0 38.0 28-29 37.306448827378475 38.0 38.0 38.0 37.0 38.0 30-31 37.307947956570224 38.0 38.0 38.0 37.0 38.0 32-33 37.25104823151751 38.0 38.0 38.0 37.0 38.0 34-35 37.26710890979699 38.0 38.0 38.0 37.0 38.0 36-37 37.268672630787535 38.0 38.0 38.0 37.0 38.0 38-39 37.2618594808587 38.0 38.0 38.0 37.0 38.0 40-41 37.254900567486914 38.0 38.0 38.0 37.0 38.0 42-43 37.239842564430546 38.0 38.0 38.0 37.0 38.0 44-45 37.22592484129018 38.0 38.0 38.0 37.0 38.0 46-47 37.2091571102705 38.0 38.0 38.0 37.0 38.0 48-49 37.17711361388044 38.0 38.0 38.0 36.5 38.0 50-51 37.1483728863141 38.0 38.0 38.0 36.0 38.0 52-53 37.11899367312401 38.0 38.0 38.0 36.0 38.0 54-55 37.09313500120412 38.0 38.0 38.0 36.0 38.0 56-57 37.06379724791819 38.0 38.0 38.0 36.0 38.0 58-59 37.06381806244898 38.0 38.0 38.0 36.0 38.0 60-61 37.085618282372934 38.0 38.0 38.0 36.0 38.0 62-63 37.089526198426874 38.0 38.0 38.0 36.0 38.0 64-65 37.08277491902149 38.0 38.0 38.0 36.0 38.0 66-67 37.08364335437419 38.0 38.0 38.0 36.0 38.0 68-69 37.083347063403906 38.0 38.0 38.0 36.0 38.0 70-71 37.06806208360638 38.0 38.0 38.0 36.0 38.0 72-73 37.04609506309744 38.0 38.0 38.0 36.0 38.0 74-75 37.03559362313734 38.0 38.0 38.0 36.0 38.0 76-77 37.030308635728254 38.0 38.0 38.0 36.0 38.0 78-79 37.006265622041184 38.0 38.0 38.0 36.0 38.0 80-81 36.97662676316309 38.0 38.0 38.0 36.0 38.0 82-83 36.97277279080866 38.0 38.0 38.0 36.0 38.0 84-85 36.91917204734726 38.0 38.0 38.0 35.5 38.0 86-87 36.90207178935242 38.0 38.0 38.0 35.0 38.0 88-89 36.906386799786866 38.0 38.0 38.0 35.0 38.0 90-91 36.884039199698705 38.0 38.0 38.0 35.0 38.0 92-93 36.88705059360566 38.0 38.0 38.0 35.0 38.0 94-95 36.83386054560559 38.0 38.0 38.0 35.0 38.0 96-97 36.80444546336813 38.0 38.0 38.0 35.0 38.0 98-99 36.87666341159989 38.0 38.0 38.0 35.0 38.0 100 35.2899159618683 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 13.0 20 18.0 21 54.0 22 183.0 23 439.0 24 1034.0 25 1939.0 26 3381.0 27 5222.0 28 7769.0 29 11386.0 30 15897.0 31 21497.0 32 29250.0 33 40396.0 34 59898.0 35 107773.0 36 325525.0 37 1323869.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.03514513578802 18.977340366996874 17.371140979408327 24.61637351780677 2 14.727827895448192 20.96957876440354 40.6208818266753 23.681711513472965 3 18.17720659375275 25.073483238457968 30.733840335292207 26.01546983249708 4 12.50790059870686 17.292799767635465 38.40319951236175 31.796100121295922 5 13.389394790927822 37.25553868552519 35.73426991832667 13.620796605220322 6 30.845141221645346 37.49787143519728 18.36359517535539 13.293392167801986 7 27.318991914286944 32.10619222846998 22.756383376935773 17.81843248030731 8 24.904937132711648 36.56581173154533 20.883813642007254 17.64543749373577 9 25.658025269643087 16.628331291279988 21.032621035126727 36.681022403950195 10-11 24.58932227692698 26.49461941102954 28.65565048774052 20.260407824302956 12-13 25.14719659144138 23.776890160711986 28.948637415190014 22.127275832656625 14-15 22.134588360909575 25.398277106979734 26.360718325502617 26.106416206608067 16-17 22.025258393043792 28.518527798857406 27.058042042435165 22.39817176566364 18-19 22.016156085148513 27.93061075463246 28.54391710149789 21.509316058721136 20-21 22.74113694690056 27.053198645967015 28.479949925632507 21.72571448149992 22-23 22.535254844904255 26.938792730917637 28.28738803470381 22.238564389474302 24-25 22.34228437973317 26.99296547022465 28.41889679936439 22.24585335067779 26-27 22.283996399087496 27.22568616819944 28.262636440825347 22.227680991887716 28-29 22.218910134298202 27.325322401907968 28.291971609748934 22.1637958540449 30-31 22.432825272160983 27.128713784689285 28.287777984494216 22.150682958655516 32-33 22.2443871690569 27.238669623515687 28.230156262446904 22.28678694498051 34-35 22.37258206587549 27.218661490253997 28.314274191718425 22.094482252152083 36-37 22.37648897003553 27.1999017116481 28.214925936409095 22.20868338190727 38-39 22.267413870074275 27.272976622334443 28.31194044315505 22.147669064436236 40-41 22.442853424684962 27.052224061571728 28.2824573475222 22.222465166221113 42-43 22.292185248046664 27.199101522488096 28.161050341244586 22.347662888220654 44-45 22.342296332280917 27.27958677905182 28.0433499363754 22.334766952291865 46-47 22.377260702179342 27.277955574199748 27.88135077166654 22.46343295195437 48-49 22.366759030634825 27.331698171280898 27.921881786694726 22.37966101138955 50-51 22.29196564590555 27.399184200649106 27.845003642947034 22.46384651049831 52-53 22.422978036846683 27.394253263090302 27.756978194456316 22.4257905056067 54-55 22.42536375117832 27.319276389082052 27.76478290127125 22.490576958468374 56-57 22.40880776293181 27.352210380059024 27.806714185982322 22.432267671026842 58-59 22.41218441980856 27.434653783868406 27.79643818969718 22.35672360662585 60-61 22.479638925456044 27.36430049040172 27.815904060642005 22.340156523500223 62-63 22.44819511345915 27.41032963572788 27.76037390242399 22.381101348388977 64-65 22.42060725100736 27.397703327783635 27.758664558430578 22.42302486277842 66-67 22.406586865751102 27.426326679551615 27.597060659990753 22.570025794706535 68-69 22.42451555296697 27.397114797972076 27.69356521487992 22.484804434181026 70-71 22.40067172405323 27.239328446188203 27.71232602693584 22.647673802822723 72-73 22.516161724736268 27.26628073031034 27.65293367934524 22.56462386560816 74-75 22.367333217972263 27.392548295044 27.720645104069952 22.519473382913784 76-77 22.46958896558636 27.306853914285355 27.569466193954124 22.65409092617416 78-79 22.411276191826403 27.299562690288585 27.570290281369985 22.71887083651503 80-81 22.42816202246616 27.353061590030965 27.585047721399146 22.633728666103732 82-83 22.449421526281157 27.37517469272826 27.73619555760109 22.4392082233895 84-85 22.621181168319456 27.29609774537705 27.577623652354678 22.505097433948812 86-87 22.441352512747734 27.430642570175184 27.55548198698452 22.572522930092564 88-89 22.49164528898285 27.32879549847137 27.59745940795286 22.582099804592918 90-91 22.532606340261204 27.381675743969836 27.588969197830615 22.49674871793835 92-93 22.600707498867802 27.38240753393265 27.58533382994333 22.43155113725621 94-95 22.550711428496577 27.362902302852472 27.57462794613027 22.511758322520688 96-97 22.507153847662984 27.555626245442138 27.64702873590601 22.29019117098887 98-99 23.642157516395333 29.39219085255719 27.880850496405756 19.084801134641726 100 30.191357460467668 40.67036943442284 29.138273105109498 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 188.0 1 225.0 2 338.5 3 465.0 4 578.0 5 747.0 6 929.5 7 1180.0 8 1420.0 9 1507.0 10 1501.5 11 1604.5 12 1856.5 13 2238.5 14 3117.5 15 4176.0 16 4777.5 17 4913.0 18 4788.5 19 4530.0 20 4255.0 21 4292.0 22 4797.5 23 5864.0 24 7618.5 25 9816.5 26 12841.0 27 16693.5 28 20741.5 29 25309.0 30 30256.5 31 35190.5 32 39997.0 33 45048.5 34 50241.0 35 55258.5 36 60376.0 37 65336.0 38 69334.5 39 72370.5 40 75858.5 41 78923.5 42 80896.5 43 82876.5 44 85095.5 45 87330.0 46 88632.0 47 89021.0 48 88525.0 49 87207.0 50 85354.0 51 82478.5 52 79040.0 53 74886.5 54 70002.0 55 65153.5 56 60095.0 57 54653.0 58 48491.0 59 41085.5 60 33748.0 61 27246.0 62 21565.5 63 16677.0 64 12594.0 65 9525.5 66 7150.0 67 5467.0 68 4068.5 69 2965.0 70 2237.5 71 1683.5 72 1259.0 73 886.0 74 603.5 75 409.5 76 257.0 77 156.0 78 106.5 79 76.5 80 52.5 81 31.0 82 18.5 83 12.5 84 8.0 85 4.5 86 3.5 87 3.0 88 2.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019943258871682004 3 0.0 4 0.0 5 0.0038352420907080778 6 2.556828060472052E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.0622801578017174E-4 44-45 5.358986444175841E-5 46-47 0.0 48-49 0.0 50-51 2.75980759725355E-5 52-53 0.0010859909946285215 54-55 0.002191520333515679 56-57 0.0023260794639805176 58-59 0.0018047356262833676 60-61 0.004513228097969452 62-63 0.001986193037517142 64-65 0.0018279169500675003 66-67 4.1685834706732707E-4 68-69 2.1058946096017364E-4 70-71 2.4320145531750862E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 9.493652860152797E-5 80-81 3.19847496713567E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 1.011022163627871E-4 92-93 1.7038282977255937E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 38.0 20-21 84.0 22-23 115.0 24-25 171.0 26-27 609.0 28-29 2161.0 30-31 5188.0 32-33 6231.0 34-35 8732.0 36-37 13961.0 38-39 16418.0 40-41 15251.0 42-43 16061.0 44-45 18314.0 46-47 18425.0 48-49 17940.0 50-51 16372.0 52-53 15701.0 54-55 16821.0 56-57 17307.0 58-59 17155.0 60-61 16690.0 62-63 15934.0 64-65 16301.0 66-67 17268.0 68-69 17290.0 70-71 16951.0 72-73 15790.0 74-75 15786.0 76-77 16340.0 78-79 16694.0 80-81 16552.0 82-83 15480.0 84-85 15121.0 86-87 16021.0 88-89 16425.0 90-91 16539.0 92-93 16165.0 94-95 19478.0 96-97 58805.0 98-99 446928.0 100-101 929935.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.8926509740587 #Duplication Level Percentage of deduplicated Percentage of total 1 93.17488137051446 84.68911971959496 2 5.242719928471078 9.530494252265274 3 0.980965611303242 2.674876947772191 4 0.3053506712543696 1.1101652794807182 5 0.12028210385377337 0.5466379642003252 6 0.06655193100179504 0.36294488617174764 7 0.03263401385791687 0.2076334422029163 8 0.01974663505988126 0.14358592067279186 9 0.014663958096818802 0.11995614226731363 >10 0.041266041244471446 0.5549878962307959 >50 8.668049548525201E-4 0.05018485476488653 >100 7.093038736820594E-5 0.009412694376069163 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.1136561209441033E-5 0.0 0.0 0.0 3 0.0 5.1136561209441033E-5 0.0 0.0 0.0 4 0.0 5.1136561209441033E-5 0.0 0.0 0.0 5 0.0 5.1136561209441033E-5 0.0 0.0 0.0 6 0.0 5.1136561209441033E-5 0.0 0.0 0.0 7 0.0 5.1136561209441033E-5 0.0 0.0 0.0 8 0.0 5.1136561209441033E-5 0.0 0.0 0.0 9 5.1136561209441033E-5 1.0227312241888207E-4 0.0 0.0 0.0 10-11 5.1136561209441033E-5 1.0227312241888207E-4 0.0 5.1136561209441033E-5 0.0 12-13 5.1136561209441033E-5 1.0227312241888207E-4 0.0 5.1136561209441033E-5 0.0 14-15 5.1136561209441033E-5 2.0454624483776413E-4 0.0 1.0227312241888207E-4 0.0 16-17 5.1136561209441033E-5 2.0454624483776413E-4 0.0 1.534096836283231E-4 0.0 18-19 5.1136561209441033E-5 2.812510866519257E-4 0.0 1.7897796423304362E-4 0.0 20-21 5.1136561209441033E-5 3.5795592846608724E-4 0.0 2.0454624483776413E-4 0.0 22-23 5.1136561209441033E-5 4.0909248967552827E-4 0.0 2.3011452544248467E-4 0.0 24-25 5.1136561209441033E-5 4.0909248967552827E-4 0.0 2.556828060472052E-4 0.0 26-27 5.1136561209441033E-5 4.0909248967552827E-4 0.0 2.556828060472052E-4 0.0 28-29 5.1136561209441033E-5 4.0909248967552827E-4 0.0 5.625021733038514E-4 0.0 30-31 5.1136561209441033E-5 5.113656120944104E-4 0.0 0.001866484484144598 0.0 32-33 5.1136561209441033E-5 5.113656120944104E-4 0.0 0.004321039422197768 0.0 34-35 5.1136561209441033E-5 6.647752957227335E-4 0.0 0.00841196431895305 0.0 36-37 5.1136561209441033E-5 8.437532599557771E-4 0.0 0.0138324398071538 0.0 38-39 5.1136561209441033E-5 8.693215405604977E-4 0.0 0.02326713535029567 0.0 40-41 5.1136561209441033E-5 9.204581017699387E-4 0.0 0.03341774275036972 0.0 42-43 5.1136561209441033E-5 9.460263823746593E-4 0.0 0.04259675548746438 0.0 44-45 5.1136561209441033E-5 9.715946629793797E-4 0.0 0.05075303700037023 0.0 46-47 1.278414030236026E-4 9.715946629793797E-4 0.0 0.05957409380899881 0.0 48-49 1.534096836283231E-4 9.715946629793797E-4 0.0 0.06885537966851235 0.0 50-51 1.534096836283231E-4 0.0010738677853982617 0.0 0.07931280643584304 0.0 52-53 1.534096836283231E-4 0.0010738677853982617 0.0 0.08841511433112355 0.0 54-55 1.534096836283231E-4 0.0010738677853982617 0.0 0.09805435611910318 0.0 56-57 2.0454624483776416E-4 0.0011250043466077028 0.0 0.10651745699926568 0.0 58-59 2.556828060472052E-4 0.0011250043466077028 0.0 0.11406009977765824 0.0 60-61 2.556828060472052E-4 0.0011250043466077028 0.0 0.12198626676512159 0.0 62-63 2.556828060472052E-4 0.0011250043466077028 0.0 0.13029595796165577 0.0 64-65 2.556828060472052E-4 0.001278414030236026 0.0 0.13742950825037278 0.0 66-67 2.556828060472052E-4 0.001278414030236026 0.0 0.14364260043731986 0.0 68-69 2.812510866519257E-4 0.001278414030236026 0.0 0.1496511463794292 0.0 70-71 3.068193672566462E-4 0.001278414030236026 0.0 0.15519946327065354 0.0 72-73 3.068193672566462E-4 0.001278414030236026 0.0 0.1595205026928513 0.0 74-75 3.068193672566462E-4 0.0013039823108407463 0.0 0.16281881089086025 0.0 76-77 3.068193672566462E-4 0.0013551188720501875 0.0 0.16637280189491643 0.0 78-79 3.068193672566462E-4 0.001380687152654908 0.0 0.1682137180984563 0.0 80-81 3.3238764786136673E-4 0.001380687152654908 0.0 0.16892962995538846 0.0 82-83 3.5795592846608724E-4 0.0014062554332596286 0.0 0.16954326868990177 0.0 84-85 3.5795592846608724E-4 0.001431823713864349 0.0 0.16987565633776314 0.0 86-87 4.0909248967552827E-4 0.001431823713864349 0.0 0.17002906602139145 0.0 88 4.0909248967552827E-4 0.001534096836283231 0.0 0.17002906602139145 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1850 0.0 41.537624 1 GTATCAA 3140 0.0 33.29906 1 ATCAACG 3715 0.0 28.59577 3 CAACGCA 3780 0.0 28.104044 5 TCAACGC 3790 0.0 28.02989 4 AACGCAG 3935 0.0 26.890316 6 TATCAAC 4100 0.0 26.526392 2 ACGCAGA 4520 0.0 23.223656 7 CGCAGAG 4670 0.0 22.477713 8 TACATGG 5180 0.0 20.91473 2 ACATGGG 5225 0.0 20.331728 3 ACGCGAT 105 0.004491781 19.994461 8 GTACATG 5070 0.0 19.960499 1 TATACCG 155 1.0091234E-4 18.962975 5 CATGGGG 3825 0.0 18.881527 4 GCAGAGT 5845 0.0 17.959095 9 TAGACCG 165 1.6293357E-4 17.813702 5 CTATACG 215 3.5110297E-6 17.576975 4 ATACGAC 120 0.009706772 17.4956 3 TACGCGA 120 0.009708201 17.495152 7 >>END_MODULE