##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140294_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8544521 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02142367020925 31.0 31.0 34.0 30.0 34.0 2 32.16163211489562 33.0 31.0 34.0 30.0 34.0 3 32.063142802270605 33.0 31.0 34.0 30.0 34.0 4 35.95404985253123 37.0 35.0 37.0 35.0 37.0 5 35.82021590209679 37.0 35.0 37.0 35.0 37.0 6 35.877949624092444 37.0 35.0 37.0 35.0 37.0 7 35.83174165058521 37.0 35.0 37.0 35.0 37.0 8 35.823849458617985 37.0 35.0 37.0 35.0 37.0 9 37.573031887919754 39.0 37.0 39.0 35.0 39.0 10-11 37.45373649383038 39.0 37.0 39.0 34.5 39.0 12-13 37.429242317971955 39.0 37.0 39.0 34.0 39.0 14-15 38.71382000231493 40.0 38.0 41.0 34.0 41.0 16-17 38.560420589989775 40.0 38.0 41.0 34.0 41.0 18-19 38.6303542937047 40.0 38.0 41.0 34.0 41.0 20-21 38.65890481569012 40.0 38.0 41.0 34.0 41.0 22-23 38.58330004780993 40.0 38.0 41.0 34.0 41.0 24-25 38.52721860727151 40.0 38.0 41.0 34.0 41.0 26-27 38.318980464012874 40.0 38.0 41.0 34.0 41.0 28-29 38.207019179129986 40.0 38.0 41.0 33.5 41.0 30-31 38.08387622679959 40.0 37.5 41.0 33.0 41.0 32-33 37.900505135921065 40.0 37.0 41.0 33.0 41.0 34-35 37.99319143344778 40.0 37.0 41.0 33.0 41.0 36-37 37.968760296663206 40.0 37.0 41.0 33.0 41.0 38-39 37.92442779253115 40.0 37.0 41.0 33.0 41.0 40-41 37.85470287331539 40.0 37.0 41.0 33.0 41.0 42-43 37.91883847383593 40.0 37.0 41.0 33.0 41.0 44-45 37.92476664829411 40.0 37.0 41.0 33.0 41.0 46-47 37.86401622836435 40.0 37.0 41.0 33.0 41.0 48-49 37.77406115956613 40.0 37.0 41.0 33.0 41.0 50-51 37.65680092535122 40.0 37.0 41.0 32.0 41.0 52-53 37.486010678620104 39.5 36.0 41.0 32.0 41.0 54-55 37.341365752850635 39.0 36.0 41.0 31.0 41.0 56-57 37.208661238139754 39.0 36.0 41.0 31.0 41.0 58-59 37.04469952194842 39.0 35.0 41.0 31.0 41.0 60-61 36.86166338475661 39.0 35.0 40.0 31.0 41.0 62-63 36.654005734806574 38.0 35.0 40.0 31.0 41.0 64-65 36.354187281702565 38.0 35.0 40.0 30.5 41.0 66-67 36.064442133284956 37.5 34.5 40.0 30.0 41.0 68-69 35.754163744570405 37.0 34.0 39.5 29.5 41.0 70-71 35.449929290790514 36.0 34.0 39.0 29.0 41.0 72-73 35.167026056485064 36.0 34.0 39.0 29.0 40.5 74-75 34.83937732519593 35.5 34.0 38.5 29.0 40.0 76-77 33.567398718095404 34.5 31.5 36.5 27.5 39.0 78-79 34.28145790131852 35.0 33.0 37.0 29.0 39.0 80-81 34.19422669307065 35.0 33.5 37.0 29.0 39.0 82-83 33.962062559004266 35.0 33.0 36.0 29.0 38.5 84-85 33.71873530323728 35.0 33.0 36.0 29.0 37.0 86-87 33.511588068254106 35.0 33.0 35.5 29.0 37.0 88-89 33.336647578391734 35.0 33.0 35.0 29.0 36.5 90-91 33.2024992027527 35.0 33.0 35.0 29.0 36.0 92-93 33.14290110337303 35.0 33.0 35.0 29.0 36.0 94-95 33.072297150962335 35.0 33.0 35.0 29.0 36.0 96-97 33.10914952022555 35.0 33.0 35.0 29.0 35.0 98-99 33.22616379467743 34.0 33.0 35.0 29.0 35.0 100 31.978596483498674 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 12.0 20 39.0 21 299.0 22 1392.0 23 4934.0 24 12982.0 25 27743.0 26 50320.0 27 79341.0 28 113639.0 29 151670.0 30 192026.0 31 236934.0 32 292395.0 33 368577.0 34 486828.0 35 665898.0 36 1016974.0 37 1694971.0 38 2076278.0 39 1032134.0 40 39133.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.25910627406733 20.646505520906324 13.940055855676404 24.154332349349954 2 14.87946486409244 21.418895219521374 40.70809820702647 22.993541709359715 3 18.200201112108765 25.997368127850372 30.647067442777143 25.155363317263713 4 12.628841335868914 17.896930676394852 38.92724940344813 30.54697858428811 5 13.000588330229396 37.98542949335603 35.988430480772415 13.025551695642154 6 30.169192632331292 38.1292994657044 18.589561661794736 13.111946240169578 7 26.579874986555712 32.58352340640277 23.27594490083177 17.560656706209745 8 24.463922553411713 36.92775756534509 21.19528994077023 17.413029940472967 9 25.264084434926193 16.769600074714543 21.550874531176177 36.41544095918308 10-11 24.237988296827872 26.920408996595597 28.940288168289364 19.901314538287167 12-13 24.70341520607182 24.289974827143617 29.3117016155733 21.69490835121126 14-15 21.752688067593258 25.922143558427674 26.766860307324425 25.558308066654646 16-17 21.61778982460514 29.06631626315842 27.4235452665975 21.892348645638947 18-19 21.5128048926786 28.376043617918363 29.072340928548563 21.038810560854476 20-21 22.24548682886454 27.57382364252581 28.98645211835752 21.194237410252132 22-23 21.978179931754934 27.477085042269245 28.79928056139247 21.745454464583357 24-25 21.778432460312068 27.551006729520637 28.93710265163402 21.733458158533274 26-27 21.821831119961345 27.76572323820958 28.784297992591185 21.62814764923789 28-29 21.697042929153827 27.9262355507165 28.738026564530855 21.638694955598815 30-31 21.95152416311512 27.74131287043044 28.701505887637317 21.60565707881712 32-33 21.774345234052976 27.80571496775449 28.663992010722144 21.755947787470394 34-35 21.882728541675572 27.848830336520532 28.699118422623567 21.56932269918033 36-37 21.861242059254593 27.8238154882123 28.569600352316932 21.745342100216174 38-39 21.751072807063547 27.921294603364828 28.647730037341763 21.679902552229866 40-41 22.002208741796 27.819464773719595 28.491660843467614 21.68666564101679 42-43 21.89277191420923 27.895141663665967 28.35391709762528 21.858169324499528 44-45 21.9497850595297 28.009382516179993 28.221093131381625 21.819739292908686 46-47 21.955055696925236 27.989317977414274 27.992160377677028 22.06346594798346 48-49 21.93527075752783 28.030197431016607 28.007919642356 22.026612169099565 50-51 21.901628077806183 28.17532547524796 27.935411640727253 21.987634806218608 52-53 22.03393247106534 28.09453337765558 27.82644552663124 22.045088624647843 54-55 22.022083499947414 28.019796547061894 27.8532099906459 22.104909962344795 56-57 22.040238925430415 28.149427877898397 27.83062432037504 21.97970887629614 58-59 21.960967058772674 28.221323600120467 27.87016380338727 21.947545537719588 60-61 22.05974838349631 28.17653208886992 27.83405722807588 21.929662299557886 62-63 22.03754324733315 28.27282549727052 27.71978479270672 21.96984646268961 64-65 21.984706500846407 28.19621733832195 27.8059017953942 22.01317436543744 66-67 22.05131986879602 28.202349912971798 27.664064743998356 22.08226547423383 68-69 22.04181868236428 28.15290761990788 27.768624559379806 22.036649138348032 70-71 21.976291958220433 27.992599176042148 27.800937977766665 22.230170887970747 72-73 22.092553484464542 28.02239484191026 27.771507292020303 22.113544381604896 74-75 21.914908817489277 28.20246352995485 27.731600251724547 22.15102740083132 76-77 22.011827142335985 28.11217191952002 27.68724913075229 22.18875180739171 78-79 21.964522984438677 28.0628757223943 27.72172810139332 22.25087319177371 80-81 21.974576960455362 28.127755198471483 27.733202556290728 22.164465284782427 82-83 21.96233403981637 28.169659331183215 27.813099460634493 22.054907168365915 84-85 22.11891924020625 28.084881589736533 27.74035792276852 22.055841247288697 86-87 21.932869018129757 28.14812672372358 27.810953358280667 22.108050899866 88-89 21.99648027507452 28.080192050187996 27.79959081304502 22.12373686169246 90-91 22.00669854097925 28.167830059690857 27.796831042200115 22.028640357129778 92-93 22.043997111342815 28.174084979735053 27.794712591897447 21.98720531702468 94-95 21.80902533103494 28.246175095327235 27.88505424948434 22.059745324153486 96-97 21.850790846554524 28.368864193782432 27.995869516949202 21.784475442713838 98-99 22.93826321833503 30.281222489481017 28.199311904877433 18.58120238730652 100 21.922746642676277 31.353404960959892 21.90671677165085 24.81713162471299 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1602.0 1 1450.0 2 1982.5 3 2866.5 4 3781.5 5 5954.5 6 7948.0 7 9309.5 8 10210.5 9 10099.5 10 9262.0 11 8357.5 12 8843.0 13 11608.5 14 18136.5 15 27308.0 16 35225.0 17 40168.5 18 42111.0 19 41699.5 20 40261.0 21 38992.0 22 39255.0 23 43012.0 24 50508.5 25 62071.0 26 78159.0 27 96216.5 28 115089.5 29 136837.5 30 156672.0 31 174887.5 32 195258.5 33 214554.5 34 233151.0 35 251011.5 36 270249.5 37 288143.0 38 300044.0 39 309866.0 40 321103.5 41 331559.5 42 338132.0 43 343157.0 44 347620.0 45 352754.0 46 356592.5 47 357026.5 48 355525.0 49 350864.0 50 344043.0 51 332741.5 52 316920.5 53 299243.0 54 280786.0 55 260798.0 56 239454.5 57 217326.5 58 192878.5 59 166227.5 60 138256.0 61 112181.5 62 89702.5 63 70065.0 64 52906.5 65 39660.5 66 30186.0 67 23191.5 68 17752.0 69 13163.0 70 9642.5 71 6994.0 72 4995.0 73 3558.5 74 2456.5 75 1637.0 76 1039.5 77 616.0 78 383.5 79 248.5 80 168.5 81 121.0 82 96.5 83 72.0 84 52.0 85 33.5 86 20.5 87 16.5 88 12.5 89 8.0 90 4.5 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.862124044168187E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0010064929327226184 18-19 0.00381531041939039 20-21 0.0 22-23 0.0012992426117866586 24-25 5.268340277883877E-4 26-27 0.013796652566675133 28-29 0.007429922006913343 30-31 6.45357812185388E-4 32-33 0.006978665742605877 34-35 0.00476362205776328 36-37 0.0020953894683831183 38-39 0.0015536256205127157 40-41 0.0038100961797675266 42-43 0.008476463395041385 44-45 0.009487939551607276 46-47 0.008323917770987415 48-49 0.007817678360145948 50-51 0.03406982809013278 52-53 0.012219250900713106 54-55 8.25659935696334E-5 56-57 0.007902960110433772 58-59 0.006464432388864015 60-61 1.306805102629612E-4 62-63 0.004868706232359599 64-65 0.0024383300690134016 66-67 0.02264341807748695 68-69 0.03044948809862148 70-71 0.014553469190966933 72-73 0.010302800634189974 74-75 0.015610572020388421 76-77 0.002016783630615317 78-79 0.0026038372049242958 80-81 0.001410349421742122 82-83 0.02294173126094509 84-85 7.204573102776988E-4 86-87 0.008889218344698163 88-89 8.268364210779614E-4 90-91 0.0029941195021462963 92-93 0.0010805932889393591 94-95 6.786556502048519E-4 96-97 0.003199472726894608 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 192.0 20-21 607.0 22-23 1442.0 24-25 3015.0 26-27 4414.0 28-29 8544.0 30-31 16862.0 32-33 21747.0 34-35 30234.0 36-37 44491.0 38-39 53318.0 40-41 56926.0 42-43 63511.0 44-45 74813.0 46-47 75165.0 48-49 70091.0 50-51 65243.0 52-53 64033.0 54-55 70496.0 56-57 73818.0 58-59 74592.0 60-61 73932.0 62-63 73107.0 64-65 77483.0 66-67 82275.0 68-69 83756.0 70-71 82834.0 72-73 79738.0 74-75 81764.0 76-77 82284.0 78-79 88617.0 80-81 90925.0 82-83 89269.0 84-85 91467.0 86-87 97182.0 88-89 105719.0 90-91 113532.0 92-93 126337.0 94-95 154496.0 96-97 334186.0 98-99 577806.0 100-101 5084258.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.43392149868106 #Duplication Level Percentage of deduplicated Percentage of total 1 88.95774039963793 74.2209312920344 2 7.391518679523122 12.334067785267337 3 2.0039236469169865 5.015856247386675 4 0.725447920565153 2.421078594232575 5 0.3550528366223178 1.4811725249315246 6 0.18980641066135204 0.9501775900239399 7 0.1082897435706302 0.6324526574928985 8 0.0726129741148219 0.4846708145665448 9 0.04531786846719435 0.34029427321615024 >10 0.147326759010106 1.8614652018210573 >50 0.0023491307418127935 0.13159764716784184 >100 5.655522376350155E-4 0.08742575162356803 >500 2.403896743768997E-5 0.01534333971410765 >1k 2.4038963599021572E-5 0.02346628052141588 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1703406194449051E-5 0.0 0.0 0.0 3 0.0 1.1703406194449051E-5 0.0 0.0 0.0 4 0.0 2.3406812388898102E-5 0.0 2.3406812388898102E-5 0.0 5 0.0 3.5110218583347156E-5 0.0 2.3406812388898102E-5 0.0 6 8.192384336114335E-5 3.5110218583347156E-5 0.0 4.6813624777796204E-5 0.0 7 8.192384336114335E-5 3.5110218583347156E-5 0.0 4.6813624777796204E-5 0.0 8 9.362724955559241E-5 3.5110218583347156E-5 0.0 7.022043716669431E-5 0.0 9 9.362724955559241E-5 7.022043716669431E-5 0.0 1.5214428052783767E-4 0.0 10-11 1.0533065575004146E-4 7.022043716669431E-5 0.0 1.8725449911118482E-4 0.0 12-13 1.0533065575004146E-4 7.022043716669431E-5 0.0 2.34068123888981E-4 0.0 14-15 1.0533065575004146E-4 8.192384336114335E-5 0.0 2.4577153008343005E-4 0.0 16-17 2.3406812388898103E-4 8.192384336114335E-5 0.0 2.691783424723282E-4 0.0 18-19 2.3406812388898103E-4 9.362724955559241E-5 0.0 2.984368579584508E-4 0.0 20-21 2.3406812388898103E-4 1.0533065575004146E-4 0.0 3.276953734445734E-4 0.0 22-23 2.3406812388898103E-4 1.1703406194449052E-4 0.0 3.45250482736247E-4 0.0 24-25 2.3991982698620554E-4 1.2873746813893958E-4 0.0 3.8036070131959414E-4 0.0 26-27 2.4577153008343005E-4 1.4044087433338863E-4 0.0 4.56432841583513E-4 0.0 28-29 2.4577153008343005E-4 1.4044087433338863E-4 0.0 7.197594809586166E-4 0.0 30-31 2.4577153008343005E-4 1.638476867222867E-4 0.0 0.0019252103189868692 0.0 32-33 2.4577153008343005E-4 1.638476867222867E-4 0.0 0.0040084166215988 0.0 34-35 2.4577153008343005E-4 2.2821642079175647E-4 0.0 0.006612424499863713 0.0 36-37 2.5162323318065455E-4 2.9258515486122626E-4 0.0 0.010971943307295985 0.0 38-39 2.574749362778791E-4 2.9258515486122626E-4 0.0 0.01795887680538207 0.0 40-41 2.574749362778791E-4 3.45250482736247E-4 0.0 0.02492825519417648 0.0 42-43 2.691783424723282E-4 3.628055920279206E-4 0.0 0.03138853541351236 0.0 44-45 2.691783424723282E-4 4.330260291946149E-4 0.0 0.03904841476777926 0.0 46-47 2.808817486667772E-4 4.798396539724111E-4 0.0 0.047287612728671394 0.0 48-49 2.9258515486122626E-4 4.798396539724111E-4 0.0 0.05570236178248026 0.0 50-51 2.9258515486122626E-4 5.149498725557582E-4 0.0 0.06436873406946977 0.0 52-53 2.9258515486122626E-4 5.149498725557582E-4 0.0 0.07250845307770909 0.0 54-55 2.9258515486122626E-4 5.208015756529827E-4 0.0 0.08054284143019837 0.0 56-57 2.9258515486122626E-4 5.5591179423633E-4 0.0 0.08755903344377057 0.0 58-59 2.9258515486122626E-4 5.617634973335545E-4 0.0 0.09509602703299577 0.0 60-61 3.511021858334715E-4 5.67615200430779E-4 0.0 0.10187815092267899 0.0 62-63 3.979158106112677E-4 5.91022012819677E-4 0.0 0.10843205839157045 0.0 64-65 3.979158106112677E-4 6.319839345002488E-4 0.0 0.11463486367462845 0.0 66-67 4.096192168057168E-4 6.319839345002488E-4 0.0 0.12167446250058955 0.0 68-69 4.2132262300016585E-4 6.436873406946978E-4 0.0 0.12864384088938396 0.0 70-71 4.2717432609739036E-4 6.436873406946978E-4 0.0 0.13413273839458056 0.0 72-73 4.739879508751866E-4 6.436873406946978E-4 0.0 0.138913579825013 0.0 74-75 4.798396539724111E-4 6.612424499863713E-4 0.0 0.14239534316786162 0.0 76-77 4.798396539724111E-4 6.963526685697186E-4 0.0 0.1458536996983213 0.0 78-79 4.798396539724111E-4 7.256111840558411E-4 0.0 0.14814756731243334 0.0 80-81 4.915430601668601E-4 7.256111840558411E-4 0.0 0.14870933080976687 0.0 82-83 4.973947632640847E-4 7.314628871530656E-4 0.0 0.14922428068232263 0.0 84-85 5.208015756529827E-4 7.373145902502902E-4 0.0 0.14942323858762824 0.0 86-87 5.325049818474318E-4 7.431662933475148E-4 0.0 0.14951686583718385 0.0 88 5.383566849446564E-4 7.841282150280864E-4 0.0 0.14952271754028107 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9135 0.0 46.93283 1 GTATCAA 16080 0.0 34.041004 1 ATCAACG 18240 0.0 29.317835 3 TCAACGC 18310 0.0 29.228727 4 CAACGCA 18515 0.0 28.836933 5 AACGCAG 19355 0.0 27.607159 6 TATCAAC 19925 0.0 27.134132 2 ACGCAGA 22710 0.0 23.547216 7 CGCAGAG 22985 0.0 23.265491 8 GTACATG 22235 0.0 21.211903 1 TACATGG 21570 0.0 21.183165 2 ACATGGG 22485 0.0 19.909477 3 GCAGAGT 27445 0.0 19.392708 9 GAGTACT 16005 0.0 18.74501 12-13 CATGGGG 16740 0.0 18.372704 4 CAGAGTA 26865 0.0 17.56421 10-11 AGAGTAC 24645 0.0 17.00383 10-11 GTACTTT 18435 0.0 16.206667 14-15 ATGGGGG 11220 0.0 15.337042 5 TACGCGG 165 0.0032933543 15.299542 5 >>END_MODULE