Basic Statistics
Measure | Value |
---|---|
Filename | SRR2140293_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8225971 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-100 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 10450 | 0.0 | 40.912014 | 1 |
GTATCAA | 16925 | 0.0 | 30.879225 | 1 |
ATCAACG | 18085 | 0.0 | 27.804996 | 3 |
TCAACGC | 19020 | 0.0 | 26.437975 | 4 |
CAACGCA | 18950 | 0.0 | 26.424608 | 5 |
AACGCAG | 19380 | 0.0 | 25.903444 | 6 |
ACGCAGA | 19840 | 0.0 | 25.345278 | 7 |
TATCAAC | 20350 | 0.0 | 25.020409 | 2 |
GTACATG | 22820 | 0.0 | 22.127842 | 1 |
TACATGG | 22845 | 0.0 | 21.532616 | 2 |
ACATGGG | 22600 | 0.0 | 21.188845 | 3 |
CGCAGAG | 23790 | 0.0 | 21.119356 | 8 |
CATGGGG | 17865 | 0.0 | 18.63135 | 4 |
GCAGAGT | 27910 | 0.0 | 17.911312 | 9 |
GAGTACT | 15455 | 0.0 | 17.849064 | 12-13 |
CAGAGTA | 27165 | 0.0 | 16.637035 | 10-11 |
AGAGTAC | 24515 | 0.0 | 16.452866 | 10-11 |
GTACTTT | 17005 | 0.0 | 16.185595 | 14-15 |
GTGGTAT | 6095 | 0.0 | 15.188764 | 1 |
GAGTACA | 16530 | 0.0 | 14.612094 | 1 |