Basic Statistics
Measure | Value |
---|---|
Filename | SRR2140291_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7265075 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-100 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8170 | 0.0 | 41.282875 | 1 |
GTATCAA | 14060 | 0.0 | 33.430744 | 1 |
ATCAACG | 15915 | 0.0 | 28.726078 | 3 |
TCAACGC | 15975 | 0.0 | 28.61819 | 4 |
CAACGCA | 16250 | 0.0 | 28.057291 | 5 |
AACGCAG | 16910 | 0.0 | 27.109413 | 6 |
TATCAAC | 17185 | 0.0 | 26.98943 | 2 |
ACGCAGA | 19960 | 0.0 | 22.904587 | 7 |
CGCAGAG | 20530 | 0.0 | 22.248451 | 8 |
GTACATG | 19665 | 0.0 | 21.159647 | 1 |
TACATGG | 19485 | 0.0 | 21.120913 | 2 |
ACATGGG | 19855 | 0.0 | 20.330328 | 3 |
GCAGAGT | 24170 | 0.0 | 18.812016 | 9 |
GTGGTAT | 4820 | 0.0 | 18.677301 | 1 |
CATGGGG | 15590 | 0.0 | 18.441174 | 4 |
GAGTACT | 13555 | 0.0 | 18.135296 | 12-13 |
AGAGTAC | 21545 | 0.0 | 16.819916 | 10-11 |
CAGAGTA | 23605 | 0.0 | 16.547169 | 10-11 |
ATGGGGG | 10260 | 0.0 | 16.13344 | 5 |
GGACCGA | 1115 | 0.0 | 15.999081 | 6 |