##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140291_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7265075 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.049142369486894 33.0 31.0 34.0 30.0 34.0 2 32.182722408233914 33.0 31.0 34.0 30.0 34.0 3 32.08476512630634 33.0 31.0 34.0 30.0 34.0 4 35.973732824506286 37.0 35.0 37.0 35.0 37.0 5 35.84385873511285 37.0 35.0 37.0 35.0 37.0 6 35.898315571415296 37.0 35.0 37.0 35.0 37.0 7 35.848939618655 37.0 35.0 37.0 35.0 37.0 8 35.841640038127615 37.0 35.0 37.0 35.0 37.0 9 37.59417789905817 39.0 37.0 39.0 35.0 39.0 10-11 37.47485098226791 39.0 37.0 39.0 34.5 39.0 12-13 37.45083897963889 39.0 37.0 39.0 34.0 39.0 14-15 38.74469644153708 40.0 38.0 41.0 34.0 41.0 16-17 38.59381802665492 40.0 38.0 41.0 34.0 41.0 18-19 38.661716981586565 40.0 38.0 41.0 34.0 41.0 20-21 38.69274446715782 40.0 38.0 41.0 34.0 41.0 22-23 38.62121419853697 40.0 38.0 41.0 34.0 41.0 24-25 38.569529686777486 40.0 38.0 41.0 34.0 41.0 26-27 38.36460661025715 40.0 38.0 41.0 34.0 41.0 28-29 38.25819812917702 40.0 38.0 41.0 34.0 41.0 30-31 38.13836575248281 40.0 38.0 41.0 33.0 41.0 32-33 37.96083749206679 40.0 37.0 41.0 33.0 41.0 34-35 38.043924368353885 40.0 37.0 41.0 33.0 41.0 36-37 38.02056901376585 40.0 37.0 41.0 33.0 41.0 38-39 37.971879036992206 40.0 37.0 41.0 33.0 41.0 40-41 37.90575523670093 40.0 37.0 41.0 33.0 41.0 42-43 37.97404213860594 40.0 37.0 41.0 33.0 41.0 44-45 37.98437898524912 40.0 37.0 41.0 33.0 41.0 46-47 37.924452449381235 40.0 37.0 41.0 33.0 41.0 48-49 37.83794571978346 40.0 37.0 41.0 33.0 41.0 50-51 37.717625902902896 40.0 37.0 41.0 32.5 41.0 52-53 37.549037453372165 40.0 36.0 41.0 32.0 41.0 54-55 37.40558331007945 39.0 36.0 41.0 32.0 41.0 56-57 37.271657557005156 39.0 36.0 41.0 31.0 41.0 58-59 37.10831972181307 39.0 35.0 41.0 31.0 41.0 60-61 36.92403800832291 39.0 35.0 40.5 31.0 41.0 62-63 36.715440885317676 38.0 35.0 40.0 31.0 41.0 64-65 36.41959239884186 38.0 35.0 40.0 30.5 41.0 66-67 36.12324704108104 37.5 34.5 40.0 30.0 41.0 68-69 35.81735632264216 37.0 34.0 39.5 30.0 41.0 70-71 35.51143270961633 36.0 34.0 39.0 30.0 41.0 72-73 35.22785707622388 36.0 34.0 39.0 29.0 40.5 74-75 34.89994817627983 35.5 34.0 38.5 29.0 40.0 76-77 33.62086315534946 34.5 32.0 36.5 28.0 39.0 78-79 34.31845561700672 35.0 33.5 37.0 29.0 39.0 80-81 34.23119101573424 35.0 34.0 37.0 29.0 39.0 82-83 34.003924607351145 35.0 33.5 36.0 29.0 38.5 84-85 33.7636850708374 35.0 33.0 36.0 29.0 37.0 86-87 33.56558521851815 35.0 33.0 35.5 29.0 37.0 88-89 33.396198920207226 35.0 33.0 35.0 29.0 36.5 90-91 33.267026745834556 35.0 33.0 35.0 29.0 36.0 92-93 33.21452535117755 35.0 33.0 35.0 29.0 36.0 94-95 33.146172193219556 35.0 33.0 35.0 29.0 36.0 96-97 33.18087180247505 35.0 33.0 35.0 29.0 35.0 98-99 33.29076146282602 35.0 33.0 35.0 29.0 35.0 100 32.09840918291557 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 6.0 20 63.0 21 258.0 22 1158.0 23 4128.0 24 10507.0 25 22454.0 26 40418.0 27 64459.0 28 91770.0 29 122901.0 30 156257.0 31 195110.0 32 240015.0 33 303988.0 34 404839.0 35 554365.0 36 849293.0 37 1429057.0 38 1778598.0 39 956318.0 40 39111.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.3643217723148 20.533800408116914 13.945761055460542 24.156116764107736 2 14.912619621958479 21.28107418023902 40.62995908507483 23.176347112727676 3 18.173688358716475 25.876035676521784 30.674469494944155 25.275806469817585 4 12.646269997212691 17.818590998716463 38.637316201140386 30.89782280293046 5 13.061337976552204 37.95823167689253 35.867737084613715 13.11269326194155 6 30.417043182623715 37.93279491264715 18.417139534003436 13.233022370725697 7 26.842448288558618 32.55904446960286 23.008599360639774 17.589907881198748 8 24.8010516064872 36.69539543638572 20.987615406585615 17.51593755054146 9 25.468367497926724 16.628651459207237 21.306111774482712 36.59686926838332 10-11 24.386369032666558 26.7540046042195 28.839192988372453 20.020433374741486 12-13 24.91360378247988 24.158319081358417 29.10180555603349 21.826271580128214 14-15 21.993847276180905 25.697319022859368 26.525851419290237 25.782982281669494 16-17 21.75663875290193 28.937401737702746 27.200634990200957 22.105324519194372 18-19 21.73585346659874 28.196051068707867 28.88307608150588 21.18501938318751 20-21 22.472279755980086 27.353565822786724 28.704246782816416 21.469907638416768 22-23 22.294859244479216 27.31400214948991 28.521957932827817 21.869180673203058 24-25 22.109815337250605 27.424532928291264 28.606736385510384 21.85891534894775 26-27 22.107223561199497 27.54170936407565 28.516801539503934 21.834265535220922 28-29 21.94271789075406 27.6980385458597 28.488459857126962 21.87078370625928 30-31 22.15738813496857 27.58097570871973 28.465792914766563 21.79584324154514 32-33 22.0458465537221 27.571392867838608 28.43650340970273 21.94625716873656 34-35 22.11159401428468 27.58091575794185 28.49034430544099 21.817145922332486 36-37 22.153843963478018 27.604245981391166 28.37074813172603 21.87116192340478 38-39 22.062245021326127 27.70339249916354 28.38773346979056 21.846629009719763 40-41 22.179255975383402 27.545119519004768 28.30456777117696 21.971056734434868 42-43 22.14326424577899 27.682714826537296 28.129178178360338 22.04484274932338 44-45 22.199678509069752 27.795394966167226 27.968866384636055 22.036060140126967 46-47 22.190693521762007 27.733826886121214 27.743797403753117 22.33168218836366 48-49 22.217889047474067 27.887491958619748 27.67698083602019 22.217638157886 50-51 22.11976934605869 27.854940567364434 27.778999467055144 22.246290619521737 52-53 22.242544342507646 27.870547165372855 27.635278287461773 22.251630204657726 54-55 22.26382587669426 27.767005614136615 27.660876255981275 22.308292253187854 56-57 22.376883998005837 27.850095841910733 27.52347700216895 22.249543157914477 58-59 22.165097145666145 28.04741762239819 27.64552883370555 22.141956398230107 60-61 22.37372352822926 28.01356852807163 27.508431979958065 22.104275963741053 62-63 22.287382941469282 28.116277034063774 27.410222893705722 22.186117130761218 64-65 22.261348722303715 28.017761329421752 27.44395603335135 22.276933914923184 66-67 22.35452821417203 27.981556908989152 27.343408436113208 22.32050644072561 68-69 22.225113835625006 27.933747097090517 27.48054924853887 22.36058981874561 70-71 22.211091857836315 27.778006121505484 27.55080132775751 22.460100692900685 72-73 22.307975130416118 27.827010423731746 27.50635894070912 22.35865550514302 74-75 22.235829093923638 27.95281318433081 27.42989485373384 22.381462868011717 76-77 22.295123333331887 27.89340261082614 27.383828035272906 22.427646020569068 78-79 22.201574886717378 27.87925341358998 27.414648829149357 22.504522870543287 80-81 22.206981099463473 27.893588928031132 27.481864786413425 22.41756518609197 82-83 22.197853274811703 27.910762949429458 27.615919074404644 22.275464701354196 84-85 22.38225861968607 27.860330537982442 27.480916310430153 22.276494531901328 86-87 22.181995314179222 27.913966886668035 27.52183826178079 22.382199537371953 88-89 22.30333420801689 27.817290830266266 27.462571357919757 22.416803603797085 90-91 22.269738562996608 27.881446297014346 27.52203004117506 22.326785098813986 92-93 22.278805418384913 27.872731515086123 27.561180948337892 22.287282118191065 94-95 22.069762824260618 27.988026915209442 27.609527401788736 22.332682858741208 96-97 22.081446200315575 28.125822248360038 27.73233903315553 22.060392518168854 98-99 23.27949085602463 30.067322437283938 27.81882209226565 18.834364614425784 100 22.266769935636603 31.07044160000154 21.481638549298818 25.18114991506304 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1245.0 1 1148.0 2 1614.0 3 2333.0 4 3145.0 5 5175.5 6 6981.5 7 8071.5 8 8734.0 9 8588.0 10 7812.0 11 6903.0 12 7327.5 13 9685.5 14 15125.0 15 22798.5 16 29647.0 17 34314.0 18 36284.0 19 35952.0 20 34327.0 21 32501.0 22 32360.5 23 35055.5 24 41002.5 25 50319.0 26 62522.0 27 76515.0 28 91128.5 29 107447.5 30 124497.5 31 141883.0 32 160261.5 33 178079.0 34 195604.5 35 212151.0 36 228718.0 37 245205.5 38 257106.0 39 262954.5 40 270901.0 41 281098.5 42 288970.0 43 297027.0 44 305627.0 45 312889.0 46 317572.0 47 320422.0 48 318111.5 49 312921.5 50 305840.5 51 294506.0 52 281352.5 53 267531.5 54 253204.5 55 235568.0 56 215508.5 57 194368.5 58 172850.5 59 150582.0 60 126575.0 61 104477.0 62 85121.5 63 67389.0 64 51696.5 65 39703.5 66 30888.5 67 24026.0 68 18162.0 69 13244.5 70 9711.0 71 7067.5 72 5052.0 73 3511.5 74 2402.5 75 1615.5 76 1061.5 77 662.5 78 435.5 79 301.5 80 209.5 81 144.5 82 106.0 83 68.0 84 43.5 85 32.5 86 25.0 87 18.0 88 11.0 89 5.5 90 2.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.3399620788498398E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.001114923108157865 18-19 0.0037714682917932714 20-21 0.0 22-23 0.0013146764908104458 24-25 5.576595154062736E-4 26-27 0.013844029717415116 28-29 0.007547143282205056 30-31 7.247964460952316E-4 32-33 0.006851534920301078 34-35 0.00464578461711964 36-37 0.002135563326710761 38-39 0.001813461195936891 40-41 0.0036772200046719826 42-43 0.008533423289241598 44-45 0.010075803095999813 46-47 0.009093803237247984 48-49 0.008551651940830242 50-51 0.03513948863769778 52-53 0.012832980081408513 54-55 6.842145915907899E-5 56-57 0.008223787867468817 58-59 0.006536814390381044 60-61 1.0220333085372331E-4 62-63 0.005183472260195043 64-65 0.00241251031348159 66-67 0.02524530523617427 68-69 0.032588078931097816 70-71 0.01592861441518723 72-73 0.01127325161001146 74-75 0.017037798141133414 76-77 0.0024105489088667707 78-79 0.0027849845231293843 80-81 0.001755133565218848 82-83 0.024680234620377595 84-85 0.0010083144694501339 86-87 0.010120824787685934 88-89 8.790870576927822E-4 90-91 0.002827243316598745 92-93 0.0010877496458933922 94-95 6.808759469056942E-4 96-97 0.0031960983680721735 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 156.0 20-21 539.0 22-23 1205.0 24-25 2837.0 26-27 4144.0 28-29 8650.0 30-31 17751.0 32-33 22692.0 34-35 31747.0 36-37 47685.0 38-39 56637.0 40-41 59429.0 42-43 65734.0 44-45 75766.0 46-47 75658.0 48-49 70524.0 50-51 64954.0 52-53 64726.0 54-55 70545.0 56-57 72706.0 58-59 72950.0 60-61 71371.0 62-63 70838.0 64-65 74421.0 66-67 78427.0 68-69 77902.0 70-71 75006.0 72-73 72021.0 74-75 73583.0 76-77 73746.0 78-79 78439.0 80-81 80038.0 82-83 78143.0 84-85 78516.0 86-87 84059.0 88-89 88874.0 90-91 94998.0 92-93 104874.0 94-95 125985.0 96-97 274236.0 98-99 467717.0 100-101 4154846.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.48106270323613 #Duplication Level Percentage of deduplicated Percentage of total 1 89.35687588630874 75.48963834716538 2 7.290109698274318 12.31752429066765 3 1.851663146428137 4.692914111360008 4 0.676131050999346 2.284810788603228 5 0.3266829518503392 1.379926146967339 6 0.16497085369060432 0.8362147820905403 7 0.10100595158008664 0.5973163090186133 8 0.05920700085545204 0.4001496281391999 9 0.0422281624283513 0.32107320341567874 >10 0.13011164289294747 1.606280821786215 >50 8.800968590832052E-4 0.04713182107923643 >100 1.3355783263109785E-4 0.027019749706934805 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3764482816763763E-5 0.0 0.0 0.0 3 0.0 1.3764482816763763E-5 0.0 1.3764482816763763E-5 0.0 4 0.0 8.258689690058258E-5 0.0 5.505793126705505E-5 0.0 5 0.0 8.258689690058258E-5 0.0 5.505793126705505E-5 0.0 6 6.882241408381881E-5 8.258689690058258E-5 0.0 5.505793126705505E-5 0.0 7 6.882241408381881E-5 8.258689690058258E-5 0.0 5.505793126705505E-5 0.0 8 6.882241408381881E-5 9.635137971734635E-5 0.0 6.882241408381881E-5 0.0 9 6.882241408381881E-5 1.2388034535087386E-4 0.0 8.258689690058258E-5 0.0 10-11 6.882241408381881E-5 1.2388034535087386E-4 0.0 1.101158625341101E-4 0.0 12-13 6.882241408381881E-5 1.2388034535087386E-4 0.0 1.3076258675925575E-4 0.0 14-15 6.882241408381881E-5 1.7893827661792893E-4 0.0 1.6517379380116517E-4 0.0 16-17 1.927027594346927E-4 1.927027594346927E-4 0.0 1.7893827661792893E-4 0.0 18-19 2.0646724225145644E-4 2.1334948365983833E-4 0.0 1.927027594346927E-4 0.0 20-21 2.0646724225145644E-4 2.3399620788498398E-4 0.0 2.477606907017477E-4 0.0 22-23 2.0646724225145644E-4 2.3399620788498398E-4 0.0 3.5099431182747593E-4 0.0 24-25 2.0646724225145644E-4 2.4087844929336584E-4 0.0 4.3358120872805854E-4 0.0 26-27 2.0646724225145644E-4 2.477606907017477E-4 0.0 5.092858642202592E-4 0.0 28-29 2.0646724225145644E-4 2.477606907017477E-4 0.0 8.74044658864499E-4 0.0 30-31 2.0646724225145644E-4 3.3034758760233033E-4 0.0 0.002202317250682202 0.0 32-33 2.271139664766021E-4 3.441120704190941E-4 0.0 0.004604219502207478 0.0 34-35 2.4087844929336584E-4 3.854055188693854E-4 0.0 0.007845755205555345 0.0 36-37 2.477606907017477E-4 4.2669896731967666E-4 0.0 0.01301431850325014 0.0 38-39 2.546429321101296E-4 4.404634501364404E-4 0.0 0.02077060457049652 0.0 40-41 2.615251735185115E-4 4.6799241576996796E-4 0.0 0.029634931504492385 0.0 42-43 2.615251735185115E-4 4.886391399951136E-4 0.0 0.038210204299336206 0.0 44-45 2.615251735185115E-4 5.712260368956961E-4 0.0 0.04809998520318097 0.0 46-47 2.615251735185115E-4 6.331662095711331E-4 0.0 0.059194158353492565 0.0 48-49 2.615251735185115E-4 6.331662095711331E-4 0.0 0.0695863428801492 0.0 50-51 2.8217189774365714E-4 6.882241408381882E-4 0.0 0.07886360429864799 0.0 52-53 3.028186219688028E-4 6.882241408381882E-4 0.0 0.08890479451347715 0.0 54-55 3.028186219688028E-4 6.882241408381882E-4 0.0 0.09870510627901294 1.3764482816763763E-5 56-57 3.028186219688028E-4 6.882241408381882E-4 0.0 0.10713585200428075 1.3764482816763763E-5 58-59 3.028186219688028E-4 6.951063822465701E-4 0.0 0.11564230238504075 1.3764482816763763E-5 60-61 3.3034758760233033E-4 7.01988623654952E-4 0.0 0.1239078743165074 1.3764482816763763E-5 62-63 3.854055188693854E-4 7.01988623654952E-4 0.0 0.1322216219378327 1.3764482816763763E-5 64-65 3.991700016861491E-4 7.708110377387708E-4 0.0 0.14045966490366585 1.3764482816763763E-5 66-67 4.129344845029129E-4 7.708110377387708E-4 0.0 0.14822971545372898 1.3764482816763763E-5 68-69 4.129344845029129E-4 7.708110377387708E-4 0.0 0.15588276789984962 1.3764482816763763E-5 70-71 4.3358120872805854E-4 7.708110377387708E-4 0.0 0.1622350767197861 1.3764482816763763E-5 72-73 4.6799241576996796E-4 7.708110377387708E-4 0.0 0.16720405501663782 1.3764482816763763E-5 74-75 4.8175689858673173E-4 7.845755205555346E-4 0.0 0.17146416244842622 1.3764482816763763E-5 76-77 4.8175689858673173E-4 8.18986727597444E-4 0.0 0.1757655633286649 1.3764482816763763E-5 78-79 4.8175689858673173E-4 8.396334518225895E-4 0.0 0.17849781316779248 1.3764482816763763E-5 80-81 4.8175689858673173E-4 8.396334518225895E-4 0.0 0.17953703162045814 1.3764482816763763E-5 82-83 4.8175689858673173E-4 8.396334518225895E-4 0.0 0.18018396231284606 1.3764482816763763E-5 84-85 4.886391399951136E-4 8.396334518225895E-4 0.0 0.1803560183480556 1.3764482816763763E-5 86-87 4.955213814034954E-4 8.396334518225895E-4 0.0 0.1805005454176316 1.3764482816763763E-5 88 5.368148298537867E-4 8.533979346393533E-4 0.0 0.18050742765904 1.3764482816763763E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8170 0.0 41.282875 1 GTATCAA 14060 0.0 33.430744 1 ATCAACG 15915 0.0 28.726078 3 TCAACGC 15975 0.0 28.61819 4 CAACGCA 16250 0.0 28.057291 5 AACGCAG 16910 0.0 27.109413 6 TATCAAC 17185 0.0 26.98943 2 ACGCAGA 19960 0.0 22.904587 7 CGCAGAG 20530 0.0 22.248451 8 GTACATG 19665 0.0 21.159647 1 TACATGG 19485 0.0 21.120913 2 ACATGGG 19855 0.0 20.330328 3 GCAGAGT 24170 0.0 18.812016 9 GTGGTAT 4820 0.0 18.677301 1 CATGGGG 15590 0.0 18.441174 4 GAGTACT 13555 0.0 18.135296 12-13 AGAGTAC 21545 0.0 16.819916 10-11 CAGAGTA 23605 0.0 16.547169 10-11 ATGGGGG 10260 0.0 16.13344 5 GGACCGA 1115 0.0 15.999081 6 >>END_MODULE