##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140290_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9543223 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.049586077994825 33.0 31.0 34.0 30.0 34.0 2 32.18437418888776 33.0 31.0 34.0 30.0 34.0 3 32.088253936851316 33.0 31.0 34.0 30.0 34.0 4 35.975768354150375 37.0 35.0 37.0 35.0 37.0 5 35.84508839414106 37.0 35.0 37.0 35.0 37.0 6 35.89852788727666 37.0 35.0 37.0 35.0 37.0 7 35.84977266066192 37.0 35.0 37.0 35.0 37.0 8 35.84008369080341 37.0 35.0 37.0 35.0 37.0 9 37.59495822323339 39.0 37.0 39.0 35.0 39.0 10-11 37.47395513025317 39.0 37.0 39.0 34.5 39.0 12-13 37.452881641768194 39.0 37.0 39.0 34.0 39.0 14-15 38.749890995945506 40.0 38.0 41.0 34.0 41.0 16-17 38.598531072783274 40.0 38.0 41.0 34.0 41.0 18-19 38.66320309186949 40.0 38.0 41.0 34.0 41.0 20-21 38.692321355043454 40.0 38.0 41.0 34.0 41.0 22-23 38.62277643486382 40.0 38.0 41.0 34.0 41.0 24-25 38.57308433423523 40.0 38.0 41.0 34.0 41.0 26-27 38.37115151823389 40.0 38.0 41.0 34.0 41.0 28-29 38.26522186535121 40.0 38.0 41.0 34.0 41.0 30-31 38.1460170300102 40.0 38.0 41.0 33.5 41.0 32-33 37.968028471853174 40.0 37.0 41.0 33.0 41.0 34-35 38.05601969448884 40.0 37.0 41.0 33.0 41.0 36-37 38.03298971489463 40.0 37.0 41.0 33.0 41.0 38-39 37.990126068483946 40.0 37.0 41.0 33.0 41.0 40-41 37.92275331219287 40.0 37.0 41.0 33.0 41.0 42-43 37.983106918704024 40.0 37.0 41.0 33.0 41.0 44-45 37.989845314807454 40.0 37.0 41.0 33.0 41.0 46-47 37.93094789468301 40.0 37.0 41.0 33.0 41.0 48-49 37.84397274539752 40.0 37.0 41.0 33.0 41.0 50-51 37.727217432252246 40.0 37.0 41.0 32.5 41.0 52-53 37.55226668100015 40.0 36.0 41.0 32.0 41.0 54-55 37.408267900639316 39.0 36.0 41.0 32.0 41.0 56-57 37.27464112628567 39.0 36.0 41.0 31.0 41.0 58-59 37.110972218865676 39.0 35.0 41.0 31.0 41.0 60-61 36.92413652035101 39.0 35.0 40.5 31.0 41.0 62-63 36.713942742018645 38.0 35.0 40.0 31.0 41.0 64-65 36.414961325124374 38.0 35.0 40.0 30.5 41.0 66-67 36.12450394124484 37.5 34.5 40.0 30.0 41.0 68-69 35.81183149276153 37.0 34.0 39.5 30.0 41.0 70-71 35.50425121803187 36.0 34.0 39.0 30.0 41.0 72-73 35.21577510833232 36.0 34.0 39.0 29.0 40.5 74-75 34.886785995831346 35.5 34.0 38.5 29.0 40.0 76-77 33.61030900216201 34.5 32.0 36.5 28.0 39.0 78-79 34.30509686906569 35.0 33.5 37.0 29.0 39.0 80-81 34.217146379716496 35.0 34.0 37.0 29.0 39.0 82-83 33.98807827914723 35.0 33.5 36.0 29.0 38.5 84-85 33.74849958887326 35.0 33.0 36.0 29.0 37.0 86-87 33.5474040948251 35.0 33.0 35.5 29.0 37.0 88-89 33.38125176492248 35.0 33.0 35.0 29.0 36.5 90-91 33.25572695024676 35.0 33.0 35.0 29.0 36.0 92-93 33.20308465863805 35.0 33.0 35.0 29.0 36.0 94-95 33.13188964988653 35.0 33.0 35.0 29.0 36.0 96-97 33.16715447583092 35.0 33.0 35.0 29.0 35.0 98-99 33.28242441479296 35.0 33.0 35.0 29.0 35.0 100 32.08582827534231 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 17.0 20 52.0 21 329.0 22 1493.0 23 5277.0 24 13668.0 25 29641.0 26 53010.0 27 84618.0 28 122221.0 29 163141.0 30 207505.0 31 257274.0 32 317878.0 33 401218.0 34 532879.0 35 730094.0 36 1116823.0 37 1888546.0 38 2347213.0 39 1220403.0 40 49918.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.48740944228171 20.49551812841427 13.929665061793065 24.087407367510956 2 14.986970334864857 21.22062955041499 40.72835770472931 23.06404240999084 3 18.32133139659288 25.795536541166246 30.526243762300666 25.356888299940213 4 12.649688684839495 17.675254995089183 38.68005599366168 30.995000326409645 5 13.126362026749245 37.924608908332125 35.821744917833314 13.12728414708532 6 30.56498836923333 37.83286841353283 18.443339320479048 13.158803896754797 7 26.91068834920865 32.52534285324779 22.981806041837228 17.582162755706328 8 24.706862660549795 36.86137272491694 20.981831819292076 17.44993279524119 9 25.45566628800354 16.68086347767416 21.25964152781508 36.60382870650722 10-11 24.49696501905069 26.725232135935627 28.791667133839375 19.986135711174306 12-13 24.97404702792757 24.102941951581766 29.114828397072976 21.808182623417686 14-15 22.0012620474236 25.72730931677904 26.496504378028263 25.7749242577691 16-17 21.83014787443177 28.878463938012793 27.228858496695608 22.06252969085983 18-19 21.732263249103713 28.22208221065744 28.82611480569902 21.21953973453982 20-21 22.48736890143106 27.393249337335607 28.7156702118797 21.40371154935363 22-23 22.26984819082773 27.310748388706646 28.54062847659018 21.878774943875445 24-25 22.07975939554556 27.40626073242623 28.620304664247907 21.893675207780298 26-27 22.067342197889133 27.61249602026216 28.477105863333602 21.843055918515102 28-29 21.962070211401834 27.7502249706304 28.47449583521694 21.813208982750826 30-31 22.199765565530612 27.56817939720633 28.43145628179536 21.800598755467703 32-33 22.039116316563966 27.619589944244012 28.36471754003397 21.976576199158057 34-35 22.09222366638339 27.701759431070776 28.421727065998848 21.78428983654699 36-37 22.140837247711733 27.615398391806277 28.363673013263202 21.880091347218787 38-39 21.991423208076068 27.732548240454 28.41782960523031 21.858198946239614 40-41 22.24082867916769 27.603124703063454 28.274702851283756 21.8813437664851 42-43 22.14446960416101 27.674800486911966 28.100799741214345 22.07993016771268 44-45 22.209842528327766 27.82592042505327 27.924843298850398 22.03939374776857 46-47 22.212578282329005 27.8011127665377 27.731910236354658 22.254398714778638 48-49 22.17562654671524 27.865572784873216 27.769880960774206 22.188919707637336 50-51 22.153864559514073 27.928023147929775 27.7045979732687 22.213514319287455 52-53 22.26893675001507 27.877424662900356 27.577534179491188 22.276104407593383 54-55 22.267000737607766 27.80100427254092 27.63089448272595 22.301100507125366 56-57 22.329828121939055 27.885061350349126 27.59234335623076 22.19276717148106 58-59 22.217961888797124 27.994133234775415 27.632049657309793 22.15585521911767 60-61 22.31750703220069 27.927450367512797 27.62142471046708 22.133617889819433 62-63 22.27971240283777 28.022140853645123 27.494326148412064 22.203820595105046 64-65 22.224920671222552 28.01430677360638 27.508758277798574 22.252014277372496 66-67 22.2710064116102 27.97405124838826 27.42842288529468 22.32651945470686 68-69 22.231272794565545 27.955555898250456 27.52446353255045 22.28870777463355 70-71 22.191461180752466 27.782822191823254 27.57727020949547 22.448446417928814 72-73 22.290287726357004 27.82382853077633 27.53488479049857 22.350998952368094 74-75 22.141330752580274 27.96379683192871 27.525443445463882 22.36942897002713 76-77 22.23757168854354 27.91059078232192 27.451193938695063 22.400643590439483 78-79 22.184291661360096 27.859968913705547 27.487347636944122 22.46839178799024 80-81 22.184497530563213 27.93685295935388 27.511925239725777 22.366724270357132 82-83 22.237849569230395 27.90780687402451 27.61307740065263 22.241266156092465 84-85 22.348434775557237 27.857870965198796 27.51854948109821 22.27514477814575 86-87 22.21140756308346 27.871271206882685 27.586719826546485 22.330601403487368 88-89 22.235449997145025 27.84169768121854 27.583327765370235 22.339524556266195 90-91 22.266565811481833 27.90808407403187 27.54165916710816 22.283690947378133 92-93 22.288972652067372 27.869589619372466 27.614668394796084 22.226769333764075 94-95 22.127612724046145 27.974155702225996 27.646208299637255 22.252023274090604 96-97 22.099231470896473 28.095385563533643 27.738432249748357 22.066950715821523 98-99 23.228445702743528 30.020133927830205 27.930188561410674 18.821231808015593 100 22.209642339619194 31.05102559300147 21.61436914537352 25.12496292200582 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1523.0 1 1375.5 2 1901.0 3 2700.5 4 3573.0 5 5904.5 6 8007.0 7 9312.0 8 10028.5 9 9740.5 10 8816.5 11 7907.5 12 8605.5 13 11611.5 14 18601.0 15 28592.5 16 37205.5 17 42764.0 18 45043.0 19 44440.0 20 42250.0 21 39849.5 22 39228.5 23 41997.5 24 48630.0 25 59971.5 26 75678.5 27 93747.5 28 113120.5 29 135363.0 30 158788.5 31 182224.5 32 207165.0 33 230664.5 34 253744.0 35 275759.5 36 298160.5 37 319997.5 38 336476.0 39 349557.0 40 362289.0 41 374411.5 42 383882.0 43 393614.5 44 402444.5 45 411678.0 46 418276.0 47 419965.0 48 418744.5 49 410794.5 50 400861.5 51 389557.5 52 371379.0 53 348546.5 54 326920.0 55 302780.0 56 277463.5 57 251748.0 58 222613.0 59 192500.0 60 160278.0 61 129647.0 62 103989.5 63 81794.5 64 61935.5 65 45851.0 66 33966.0 67 25863.5 68 19717.0 69 14476.0 70 10506.0 71 7435.0 72 5176.0 73 3476.5 74 2309.5 75 1544.5 76 1032.0 77 669.0 78 424.5 79 271.0 80 187.5 81 131.0 82 100.0 83 71.5 84 47.0 85 35.0 86 27.0 87 17.5 88 11.0 89 7.0 90 3.5 91 2.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 4.2962424748955357E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 9.692742168971635E-4 18-19 0.0037775497858532694 20-21 0.0 22-23 0.001309988088016318 24-25 6.131841510449706E-4 26-27 0.013688633857040227 28-29 0.0075382364849177035 30-31 7.038447255504565E-4 32-33 0.006822092821205422 34-35 0.004777663888125167 36-37 0.00205173935275841 38-39 0.001530860738985417 40-41 0.003818904641467697 42-43 0.008427361743772156 44-45 0.009806682762876703 46-47 0.008630268806679222 48-49 0.007907329660248773 50-51 0.03341181315821834 52-53 0.012723241432861514 54-55 8.58214939244962E-5 56-57 0.008060739259353852 58-59 0.0062120326722558995 60-61 1.3569394384359233E-4 62-63 0.005210210844833304 64-65 0.0023857709727342523 66-67 0.023441876880849578 68-69 0.030851525537946886 70-71 0.014836595220481667 72-73 0.010915457570233041 74-75 0.01643387264688325 76-77 0.0022130696907293346 78-79 0.0026742438657401113 80-81 0.001707682044221656 82-83 0.023795884133986457 84-85 7.514764291561651E-4 86-87 0.00919030629225479 88-89 9.223137260700071E-4 90-91 0.0029364699033679375 92-93 0.0011602783734035592 94-95 7.379600696515039E-4 96-97 0.0029701096453965373 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 188.0 20-21 672.0 22-23 1426.0 24-25 2868.0 26-27 4658.0 28-29 9697.0 30-31 19504.0 32-33 25120.0 34-35 35748.0 36-37 53331.0 38-39 64877.0 40-41 69098.0 42-43 77250.0 44-45 88968.0 46-47 89448.0 48-49 83945.0 50-51 78682.0 52-53 77938.0 54-55 84731.0 56-57 88871.0 58-59 88836.0 60-61 88339.0 62-63 87453.0 64-65 91817.0 66-67 97388.0 68-69 97292.0 70-71 96585.0 72-73 92850.0 74-75 95209.0 76-77 96672.0 78-79 102702.0 80-81 103856.0 82-83 102736.0 84-85 103307.0 86-87 110412.0 88-89 118437.0 90-91 126556.0 92-93 139135.0 94-95 168904.0 96-97 367991.0 98-99 630271.0 100-101 5579455.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.2908241039013 #Duplication Level Percentage of deduplicated Percentage of total 1 88.0700453387067 72.47356609790126 2 7.811467959282546 12.856242716611616 3 2.225066370374047 5.493076359118703 4 0.8583220455407086 2.825281138963648 5 0.4007191039084553 1.6487752647401817 6 0.2219914898694522 1.0960717587246045 7 0.12364293154551707 0.7122275112051997 8 0.08460605565638886 0.5569841635315823 9 0.054574222930005356 0.4041862001766151 >10 0.14766171585791638 1.7634939876043205 >50 0.0015035429317542008 0.08383216910469042 >100 3.550726016056807E-4 0.054817256678712796 >500 2.2075446922006003E-5 0.012098600753027542 >1k 2.2075348018587582E-5 0.01934677488583946 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0478640182672038E-5 2 0.0 4.191456073068815E-5 0.0 0.0 1.0478640182672038E-5 3 0.0 4.191456073068815E-5 0.0 0.0 1.0478640182672038E-5 4 0.0 1.0478640182672039E-4 0.0 0.0 1.0478640182672038E-5 5 0.0 1.0478640182672039E-4 0.0 0.0 1.0478640182672038E-5 6 0.0 1.0478640182672039E-4 0.0 0.0 2.0957280365344076E-5 7 0.0 1.0478640182672039E-4 0.0 0.0 2.0957280365344076E-5 8 0.0 1.1526504200939243E-4 0.0 0.0 2.0957280365344076E-5 9 0.0 2.5148736438412894E-4 0.0 0.0 2.0957280365344076E-5 10-11 1.0478640182672038E-5 2.5148736438412894E-4 0.0 0.0 2.0957280365344076E-5 12-13 1.0478640182672038E-5 2.5148736438412894E-4 0.0 0.0 2.0957280365344076E-5 14-15 1.0478640182672038E-5 3.300771657541692E-4 0.0 0.0 3.143592054801611E-5 16-17 1.0478640182672038E-5 3.457951260281773E-4 0.0 5.239320091336019E-6 6.811116118736826E-5 18-19 1.0478640182672038E-5 3.7723104657619343E-4 0.0 1.0478640182672038E-5 7.335048127870428E-5 20-21 1.0478640182672038E-5 4.2438492739821755E-4 0.0 2.0957280365344076E-5 7.335048127870428E-5 22-23 1.0478640182672038E-5 4.7153880822024173E-4 0.0 2.0957280365344076E-5 7.858980137004029E-5 24-25 1.0478640182672038E-5 4.924960885855858E-4 0.0 3.143592054801612E-5 8.38291214613763E-5 26-27 1.0478640182672038E-5 5.134533689509299E-4 0.0 1.0478640182672039E-4 8.38291214613763E-5 28-29 1.0478640182672038E-5 5.239320091336019E-4 0.0 3.6675240639352135E-4 8.38291214613763E-5 30-31 1.0478640182672038E-5 5.710858899556262E-4 0.0 0.0014565309853914134 8.38291214613763E-5 32-33 1.0478640182672038E-5 5.920431703209702E-4 0.0 0.0033741221388203964 9.430776164404834E-5 34-35 1.0478640182672038E-5 7.282654926957067E-4 0.0 0.006114286546589134 1.1526504200939243E-4 36-37 1.0478640182672038E-5 8.697271351617792E-4 0.0 0.010379093100936654 1.1526504200939243E-4 38-39 1.0478640182672038E-5 9.483169365318195E-4 0.0 0.01733167086213955 1.2574368219206447E-4 40-41 1.0478640182672038E-5 0.0010426246981758678 0.0 0.02460908646900528 1.4670096255740855E-4 42-43 1.0478640182672038E-5 0.001089778578997892 0.0 0.031414963267650774 1.4670096255740855E-4 44-45 1.0478640182672038E-5 0.0012102829410986205 0.0 0.039237268164015446 1.4670096255740855E-4 46-47 1.0478640182672038E-5 0.0013203086630166768 0.0 0.04797121475627259 1.4670096255740855E-4 48-49 1.0478640182672038E-5 0.0013360266232906848 0.0 0.0567575545494431 1.4670096255740855E-4 50-51 1.0478640182672038E-5 0.0014984455461221015 0.0 0.06585825354809377 1.5194028264874456E-4 52-53 1.0478640182672038E-5 0.0015194028264874455 0.0 0.0753623801937773 1.624189228314166E-4 54-55 1.0478640182672038E-5 0.0015246421465787815 0.0 0.08446307919242796 1.676582429227526E-4 56-57 1.0478640182672038E-5 0.0015403601068527896 0.0 0.0915937938367363 1.676582429227526E-4 58-59 1.0478640182672038E-5 0.0015613173872181336 0.0 0.09864591867967457 1.676582429227526E-4 60-61 1.0478640182672038E-5 0.00159275330776615 0.0 0.10601764204818435 1.7813688310542466E-4 62-63 1.0478640182672038E-5 0.001603231947948822 0.0 0.11302261301030062 1.9909416347076874E-4 64-65 1.0478640182672038E-5 0.0016870610694101982 0.0 0.11980753252858076 1.9909416347076874E-4 66-67 1.0478640182672038E-5 0.0016975397095928702 0.0 0.1269696830934371 2.0433348356210476E-4 68-69 1.0478640182672038E-5 0.0017342149502322223 0.0 0.1337650812518999 2.0957280365344077E-4 70-71 1.0478640182672038E-5 0.0017604115506889024 0.0 0.14003130808113778 2.1481212374477678E-4 72-73 1.0478640182672038E-5 0.0017813688310542464 0.0 0.14471002092270085 2.5148736438412894E-4 74-75 1.0478640182672038E-5 0.0018180440716935988 0.0 0.14847185274828012 2.5148736438412894E-4 76-77 1.0478640182672038E-5 0.0019228304735203192 0.0 0.15203982973047994 2.5148736438412894E-4 78-79 1.0478640182672038E-5 0.0019804629945250154 0.0 0.1543870451313985 2.5148736438412894E-4 80-81 1.0478640182672038E-5 0.0019909416347076874 0.0 0.15525677226656026 2.5672668447546495E-4 82-83 1.0478640182672038E-5 0.0020066595949816955 0.0 0.15575450767523719 2.72444644749473E-4 84-85 1.0478640182672038E-5 0.0020118989150730315 0.0 0.15600599503962131 2.72444644749473E-4 86-87 1.0478640182672038E-5 0.0020433348356210476 0.0 0.15617365328254407 2.82923284932145E-4 88 1.0478640182672038E-5 0.002148121237447768 0.0 0.15617365328254407 2.82923284932145E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10305 0.0 45.438335 1 GTATCAA 17845 0.0 33.666084 1 ATCAACG 20305 0.0 28.74318 3 TCAACGC 20335 0.0 28.700474 4 CAACGCA 20685 0.0 28.21485 5 AACGCAG 21630 0.0 27.020819 6 TATCAAC 22420 0.0 26.404627 2 ACGCAGA 25175 0.0 23.16608 7 CGCAGAG 25870 0.0 22.527563 8 GTACATG 25745 0.0 21.451729 1 TACATGG 26250 0.0 20.768288 2 ACATGGG 26570 0.0 19.888771 3 GCAGAGT 30745 0.0 18.710775 9 CATGGGG 20405 0.0 18.23481 4 GAGTACT 16740 0.0 18.133299 12-13 CAGAGTA 30210 0.0 17.001095 10-11 AGAGTAC 27055 0.0 16.967083 10-11 GTACTTT 19185 0.0 15.8448305 14-15 GTGGTAT 6190 0.0 15.601766 1 GAGTACA 19010 0.0 15.350613 1 >>END_MODULE