##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140289_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6700742 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.068313777787594 33.0 31.0 34.0 30.0 34.0 2 32.20279709321744 33.0 31.0 34.0 30.0 34.0 3 32.10918089369804 33.0 31.0 34.0 30.0 34.0 4 35.98500733202383 37.0 35.0 37.0 35.0 37.0 5 35.8558713348462 37.0 35.0 37.0 35.0 37.0 6 35.91176036922478 37.0 35.0 37.0 35.0 37.0 7 35.86555384463392 37.0 35.0 37.0 35.0 37.0 8 35.85782649145423 37.0 35.0 37.0 35.0 37.0 9 37.61636099405111 39.0 37.0 39.0 35.0 39.0 10-11 37.49619019804075 39.0 37.0 39.0 35.0 39.0 12-13 37.471963776548925 39.0 37.0 39.0 34.0 39.0 14-15 38.77344665710156 40.0 38.0 41.0 35.0 41.0 16-17 38.61987411244904 40.0 38.0 41.0 34.0 41.0 18-19 38.688118942648444 40.0 38.0 41.0 34.0 41.0 20-21 38.71398920253752 40.0 38.0 41.0 34.0 41.0 22-23 38.64186951736549 40.0 38.0 41.0 34.0 41.0 24-25 38.58628349767653 40.0 38.0 41.0 34.0 41.0 26-27 38.38229032566762 40.0 38.0 41.0 34.0 41.0 28-29 38.272414997763846 40.0 38.0 41.0 34.0 41.0 30-31 38.15891986440534 40.0 38.0 41.0 33.5 41.0 32-33 37.98494520891757 40.0 37.0 41.0 33.0 41.0 34-35 38.071155343684424 40.0 37.5 41.0 33.0 41.0 36-37 38.04921012430643 40.0 37.0 41.0 33.0 41.0 38-39 38.00391893083014 40.0 37.0 41.0 33.0 41.0 40-41 37.93440735450573 40.0 37.0 41.0 33.0 41.0 42-43 37.99995350957358 40.0 37.0 41.0 33.0 41.0 44-45 38.00630845054472 40.0 37.0 41.0 33.0 41.0 46-47 37.939464218466966 40.0 37.0 41.0 33.0 41.0 48-49 37.85209634620596 40.0 37.0 41.0 33.0 41.0 50-51 37.73518382456592 40.0 37.0 41.0 32.5 41.0 52-53 37.564322363179436 40.0 36.0 41.0 32.0 41.0 54-55 37.41006318791297 39.0 36.0 41.0 32.0 41.0 56-57 37.27285139961623 39.0 36.0 41.0 31.0 41.0 58-59 37.104683216491466 39.0 35.0 41.0 31.0 41.0 60-61 36.91381747224105 39.0 35.0 40.0 31.0 41.0 62-63 36.69468494267163 38.0 35.0 40.0 31.0 41.0 64-65 36.38538453295486 38.0 35.0 40.0 30.5 41.0 66-67 36.08533357622606 37.0 34.5 40.0 30.0 41.0 68-69 35.76726704637272 37.0 34.0 39.5 30.0 41.0 70-71 35.45224261232141 36.0 34.0 39.0 30.0 41.0 72-73 35.1627155552147 36.0 34.0 39.0 29.0 40.0 74-75 34.83428441162597 35.0 34.0 38.5 29.0 40.0 76-77 33.5670374366612 34.5 32.0 36.5 28.0 39.0 78-79 34.26532831334758 35.0 33.5 37.0 29.0 39.0 80-81 34.17544704891925 35.0 34.0 36.5 29.0 39.0 82-83 33.953298946823544 35.0 33.5 36.0 29.0 38.0 84-85 33.72526633552477 35.0 33.0 36.0 29.0 37.0 86-87 33.535574249953854 35.0 33.0 35.0 29.0 37.0 88-89 33.36935749976652 35.0 33.0 35.0 29.0 36.0 90-91 33.24892663851668 35.0 33.0 35.0 29.0 36.0 92-93 33.200294643180186 35.0 33.0 35.0 29.0 36.0 94-95 33.13396600331798 35.0 33.0 35.0 29.0 36.0 96-97 33.17394068145278 35.0 33.0 35.0 29.0 35.0 98-99 33.28273204898366 35.0 33.0 35.0 29.0 35.0 100 32.057218074033614 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 11.0 20 55.0 21 247.0 22 1172.0 23 3824.0 24 9876.0 25 20921.0 26 37517.0 27 59174.0 28 85778.0 29 113536.0 30 143638.0 31 178159.0 32 219971.0 33 278569.0 34 371100.0 35 509509.0 36 784428.0 37 1334673.0 38 1642629.0 39 869984.0 40 35970.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.01428737295064 19.998710590558478 13.513219879231286 24.4737821572596 2 15.190854982925773 21.054892129856665 40.168760414891366 23.5854924723262 3 18.691283335798246 25.316275855255487 30.22194490529894 25.77049590364733 4 12.939014813583332 17.317694070298483 38.068649710733524 31.67464140538466 5 13.435422524848741 37.61292406124576 35.555704129482976 13.395949284422532 6 31.243942834987525 37.22077346061078 18.126052308833856 13.409231395567833 7 27.44885566404437 32.14596234267787 22.602183459682525 17.802998533595236 8 25.182420096162485 36.52247765993676 20.691186140281182 17.603916103619568 9 25.71536107493767 16.4570729629644 20.919429519894962 36.90813644220297 10-11 24.82196747763158 26.412567444023367 28.52339337941977 20.242071698925283 12-13 25.25446435633546 23.847739548843993 28.86051276112407 22.03728333369648 14-15 22.321938376376828 25.358348373956197 26.18822661729104 26.13148663237594 16-17 22.13831186109924 28.553880217035044 26.923446002182764 22.384361919682945 18-19 22.132499961756544 27.884218958531783 28.52953719446742 21.453743885244254 20-21 22.801120728271897 27.049781399483575 28.355384913986185 21.79371295825834 22-23 22.686946550557728 26.938975639735407 28.180142744292034 22.193935065414827 24-25 22.460912394227545 27.12496284462312 28.180451740707944 22.23367302044139 26-27 22.43773997690202 27.153877769810236 28.17820742907133 22.230174824216416 28-29 22.33293822331122 27.31371593764122 28.155097760024354 22.1982480790232 30-31 22.486926353537743 27.172485324887973 28.129630405694634 22.210957915879654 32-33 22.284035881463815 27.286861158132368 28.11091769127333 22.318185269130485 34-35 22.453629612927934 27.253515281018153 28.114910493060876 22.177944612993034 36-37 22.495866191327817 27.264241337602797 27.988977316755147 22.25091515431424 38-39 22.41608038487147 27.341882818348846 28.061743021220337 22.180293775559345 40-41 22.49982893457384 27.238118777399233 27.951147089571084 22.31090519845584 42-43 22.41631526133536 27.437604527376745 27.740746970760373 22.405333240527522 44-45 22.525192617284535 27.40277495032354 27.7026134627898 22.369418969602126 46-47 22.524300639314067 27.40374596238262 27.513095881334475 22.55885751696884 48-49 22.429212937252654 27.658718975568107 27.365036110025432 22.547031977153804 50-51 22.40984365202891 27.54766296029002 27.507045464865428 22.53544792281565 52-53 22.59379883133884 27.52586258033428 27.27501728776676 22.605321300560117 54-55 22.534605653077097 27.4271459935219 27.398562281971262 22.639686071429743 56-57 22.594257279776937 27.525317420888268 27.34172823277308 22.538697066561717 58-59 22.469398406566572 27.652513294332433 27.371799037064832 22.506289262036166 60-61 22.630386863832825 27.559365628456746 27.371702706599816 22.43854480111062 62-63 22.661919368204657 27.6588643868538 27.162439559235914 22.51677668570563 64-65 22.576537962501842 27.606370473574053 27.211142670139942 22.605948893784163 66-67 22.669140266048174 27.586568011543072 27.066722717923454 22.6775690044853 68-69 22.40812425757301 27.584987210247508 27.30422289673482 22.702665635444667 70-71 22.500058925547076 27.40584912073188 27.304389224559593 22.78970272916145 72-73 22.59035376242913 27.51151719398081 27.183502189013897 22.71462685457616 74-75 22.42506888897129 27.608441673081913 27.26171389230021 22.704775545646587 76-77 22.61702833939482 27.45449586947811 27.15595435418512 22.772521436941958 78-79 22.48347999788653 27.45946958355751 27.17174609505272 22.885304323503238 80-81 22.587063109246305 27.447317714639063 27.21684757380111 22.748771602313518 82-83 22.468455203420817 27.54796404705624 27.363351043770145 22.620229705752802 84-85 22.626643680345122 27.458635546216637 27.255608600828463 22.65911217260978 86-87 22.500069256553978 27.424079761066896 27.345558888345987 22.730292094033135 88-89 22.54458127998407 27.36477276993619 27.302039855243976 22.78860609483576 90-91 22.58546935750177 27.411622320292693 27.285369975977257 22.71753834622828 92-93 22.639617572768103 27.253256586377972 27.42994459278466 22.67718124806926 94-95 22.381172137356195 27.390827887325802 27.49885493923086 22.729145036087143 96-97 22.41525007610525 27.508834172376744 27.61274528545961 22.463170466058397 98-99 23.650577613348197 29.491455242622106 27.5999828492325 19.257984294797193 100 22.59600800983195 30.46115429559032 21.256623174099182 25.686214520478543 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 702.0 1 682.5 2 1141.0 3 1737.5 4 2369.5 5 3859.0 6 5262.5 7 6354.0 8 7161.0 9 7143.5 10 6514.0 11 5811.5 12 6015.0 13 7758.0 14 12005.5 15 17982.5 16 23286.0 17 27011.5 18 28735.5 19 28471.0 20 27235.5 21 26257.0 22 26543.5 23 28656.5 24 33375.0 25 41249.5 26 51763.0 27 63052.0 28 75005.0 29 88818.5 30 103575.5 31 119432.0 32 136078.5 33 152729.0 34 168034.0 35 181189.0 36 196476.5 37 213939.5 38 226501.0 39 232787.5 40 240129.5 41 250281.0 42 259532.5 43 269032.0 44 279556.5 45 286091.5 46 289109.5 47 291350.5 48 292119.5 49 291715.5 50 287150.0 51 279287.0 52 269314.0 53 257940.5 54 246773.5 55 232264.0 56 215911.0 57 198315.0 58 178579.5 59 157136.5 60 133057.0 61 109619.0 62 88967.5 63 70437.0 64 54794.5 65 42123.0 66 31797.0 67 24490.0 68 18715.0 69 13898.0 70 10399.0 71 7590.5 72 5371.5 73 3791.5 74 2640.0 75 1774.0 76 1175.5 77 784.5 78 519.0 79 334.5 80 215.5 81 133.0 82 95.0 83 66.5 84 43.5 85 31.5 86 26.0 87 21.5 88 14.5 89 8.0 90 5.5 91 4.0 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.7309300969952283E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0010894315883226066 18-19 0.0037234682368012376 20-21 0.0 22-23 0.0013880937823025654 24-25 5.150593269966107E-4 26-27 0.013471882635109206 28-29 0.007450261842703077 30-31 7.857596406159906E-4 32-33 0.006661387567030212 34-35 0.004440023151334276 36-37 0.0020717763122774825 38-39 0.0015834572566268067 40-41 0.0038047185260029503 42-43 0.008328627697350197 44-45 0.009373953381714173 46-47 0.008557636073314884 48-49 0.008431443834550528 50-51 0.03348111166304867 52-53 0.012471639208071221 54-55 6.563419699185348E-5 56-57 0.007711494579689963 58-59 0.006413566915719863 60-61 1.0172340642866498E-4 62-63 0.0047307334239428765 64-65 0.0026429278024913193 66-67 0.023579119124796412 68-69 0.031585776472867755 70-71 0.015929850371841928 72-73 0.011286341404449006 74-75 0.016581888151383232 76-77 0.0020927552084613085 78-79 0.0025281455030114757 80-81 0.0015655780296576188 82-83 0.024186834624515957 84-85 9.88677565650415E-4 86-87 0.009614695590507908 88-89 7.651541066279995E-4 90-91 0.00278360233872452 92-93 9.531149012843011E-4 94-95 7.794255049459421E-4 96-97 0.00274205459029413 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 161.0 20-21 531.0 22-23 1110.0 24-25 2725.0 26-27 3649.0 28-29 7615.0 30-31 15240.0 32-33 19564.0 34-35 27734.0 36-37 41926.0 38-39 49859.0 40-41 51545.0 42-43 57006.0 44-45 65911.0 46-47 66200.0 48-49 62704.0 50-51 59164.0 52-53 57969.0 54-55 63634.0 56-57 65987.0 58-59 65884.0 60-61 64642.0 62-63 63661.0 64-65 66369.0 66-67 71291.0 68-69 71878.0 70-71 71188.0 72-73 66810.0 74-75 69768.0 76-77 70105.0 78-79 74049.0 80-81 75541.0 82-83 73727.0 84-85 74346.0 86-87 79494.0 88-89 85041.0 90-91 91174.0 92-93 100136.0 94-95 115815.0 96-97 257041.0 98-99 435264.0 100-101 3837284.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.58349787608947 #Duplication Level Percentage of deduplicated Percentage of total 1 90.62152195124902 78.46328353393965 2 6.713006743407929 11.624712102200693 3 1.5075149029643036 3.91577740196949 4 0.5482621739741302 1.8988182710331722 5 0.23623247979942824 1.022691720648857 6 0.12282889690509172 0.6380973320582651 7 0.0784154403248161 0.47526381775714344 8 0.04036313189949508 0.2795824916073801 9 0.033074793144665215 0.2577358153793897 >10 0.09696953168559112 1.2928769506946436 >50 0.0015639773607857173 0.08937165012955949 >100 2.4597728473543914E-4 0.04178891258178361 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.9847440775961825E-5 0.0 0.0 0.0 3 0.0 2.9847440775961825E-5 0.0 1.4923720387980913E-5 0.0 4 0.0 1.193897631038473E-4 0.0 2.9847440775961825E-5 0.0 5 0.0 1.193897631038473E-4 0.0 5.969488155192365E-5 0.0 6 1.193897631038473E-4 1.193897631038473E-4 0.0 8.954232232788548E-5 0.0 7 1.193897631038473E-4 1.193897631038473E-4 0.0 8.954232232788548E-5 0.0 8 1.193897631038473E-4 1.193897631038473E-4 0.0 8.954232232788548E-5 0.0 9 1.193897631038473E-4 1.6416092426779004E-4 0.0 1.3431348349182822E-4 0.0 10-11 1.2685162329783775E-4 1.6416092426779004E-4 0.0 1.8654650484976141E-4 0.0 12-13 1.3431348349182822E-4 1.6416092426779004E-4 0.0 1.9400836504375186E-4 0.0 14-15 1.3431348349182822E-4 2.462413864016851E-4 0.0 1.9400836504375186E-4 0.0 16-17 3.133981281475992E-4 2.537032465956755E-4 0.0 2.0893208543173279E-4 0.0 18-19 3.133981281475992E-4 2.6862696698365645E-4 0.0 2.3131766601370413E-4 0.0 20-21 3.133981281475992E-4 2.8355068737163735E-4 0.0 2.7608882717764687E-4 0.0 22-23 3.133981281475992E-4 3.133981281475992E-4 0.0 3.133981281475992E-4 0.0 24-25 3.133981281475992E-4 3.880167300875037E-4 0.0 3.43245568923561E-4 0.0 26-27 3.133981281475992E-4 4.477116116394274E-4 0.0 4.4024975144543694E-4 0.0 28-29 3.133981281475992E-4 4.477116116394274E-4 0.0 8.804995028908738E-4 0.0 30-31 3.133981281475992E-4 4.850209126093797E-4 0.0 0.002417642702852908 0.0 32-33 3.208599883415896E-4 4.924827728033702E-4 0.0 0.005029293770749567 0.0 34-35 3.283218485355801E-4 5.447157941613033E-4 0.0 0.008558753642507053 0.0 36-37 3.283218485355801E-4 5.969488155192365E-4 0.0 0.013670127875390516 0.0 38-39 3.283218485355801E-4 6.267962562951984E-4 0.0 0.021766246185870163 0.0 40-41 3.283218485355801E-4 6.715674174591411E-4 0.0 0.03039215657012313 0.0 42-43 3.283218485355801E-4 6.86491137847122E-4 0.0 0.03888375347088427 0.0 44-45 3.283218485355801E-4 7.68571599981017E-4 0.0 0.048427472658998064 0.0 46-47 3.283218485355801E-4 8.357283417269311E-4 0.0 0.05870991600631691 0.0 48-49 3.3578370872957056E-4 8.357283417269311E-4 0.0 0.06953707514779707 0.0 50-51 3.880167300875037E-4 9.103469436668357E-4 0.0 0.08037915800966519 0.0 52-53 4.104023106694751E-4 9.103469436668357E-4 0.0 0.09094515204435569 0.0 54-55 4.1786417086346557E-4 9.103469436668357E-4 0.0 0.10034709588878366 0.0 56-57 4.1786417086346557E-4 9.252706640548166E-4 0.0 0.1082044346730556 0.0 58-59 4.1786417086346557E-4 9.252706640548166E-4 0.0 0.11612893019907347 0.0 60-61 4.4024975144543694E-4 9.401943844427976E-4 0.0 0.12431459083188101 0.0 62-63 4.924827728033702E-4 9.625799650247689E-4 0.0 0.13235101426080875 0.0 64-65 5.07406493191351E-4 0.0011491264698745302 0.0 0.14020089118488668 0.0 66-67 5.521776543552937E-4 0.0011565883300685208 0.0 0.1482298527536204 0.0 68-69 5.521776543552937E-4 0.0011789739106504921 0.0 0.15596033991459451 0.0 70-71 5.596395145492843E-4 0.0011789739106504921 0.0 0.16275063269112583 0.0 72-73 5.894869553252461E-4 0.0011789739106504921 0.0 0.16776500274148742 0.0 74-75 5.969488155192365E-4 0.0011789739106504921 0.0 0.1723391230404036 0.0 76-77 6.417199766831792E-4 0.0012162832116204443 0.0 0.1767789298558279 0.0 78-79 6.715674174591411E-4 0.0012386687922024157 0.0 0.17949504696644042 0.0 80-81 6.715674174591411E-4 0.0012386687922024157 0.0 0.18042777949068922 0.0 82-83 6.715674174591411E-4 0.0012386687922024157 0.0 0.18090533854310464 0.0 84-85 7.014148582351029E-4 0.0012685162329783776 0.0 0.18121127481105825 0.0 86-87 7.014148582351029E-4 0.0012983636737543395 0.0 0.1813381264343561 0.0 88 7.014148582351029E-4 0.0012983636737543395 0.0 0.18135305015474407 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8080 0.0 38.424316 1 GTATCAA 13575 0.0 31.65757 1 TCAACGC 13980 0.0 29.432348 4 ATCAACG 14055 0.0 29.30486 3 CAACGCA 14390 0.0 28.449348 5 AACGCAG 14920 0.0 27.494461 6 TATCAAC 15495 0.0 27.091103 2 ACGCAGA 17440 0.0 23.545471 7 CGCAGAG 17860 0.0 22.945227 8 GTACATG 17835 0.0 22.814264 1 TACATGG 17970 0.0 22.087786 2 ACATGGG 18230 0.0 21.066006 3 GCAGAGT 21350 0.0 19.019257 9 GAGTACT 11185 0.0 18.785982 12-13 CATGGGG 14840 0.0 18.120377 4 ACCGAAC 965 0.0 17.22779 8 AGAGTAC 18570 0.0 16.87574 10-11 CAGAGTA 20835 0.0 16.69688 10-11 GTGGTAT 4640 0.0 16.21278 1 GTACTTT 13270 0.0 15.8662195 14-15 >>END_MODULE