##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140287_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14125285 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.960206820605745 31.0 31.0 34.0 30.0 34.0 2 32.104488298820165 33.0 31.0 34.0 30.0 34.0 3 32.00542105876094 33.0 31.0 34.0 30.0 34.0 4 35.914191182691184 37.0 35.0 37.0 35.0 37.0 5 35.77234271733278 37.0 35.0 37.0 35.0 37.0 6 35.830216098294656 37.0 35.0 37.0 35.0 37.0 7 35.78008953447665 37.0 35.0 37.0 33.0 37.0 8 35.77140864768392 37.0 35.0 37.0 33.0 37.0 9 37.515409635982564 39.0 37.0 39.0 35.0 39.0 10-11 37.387579294860245 39.0 37.0 39.0 34.0 39.0 12-13 37.361476423307565 39.0 37.0 39.0 34.0 39.0 14-15 38.62866575789444 40.0 38.0 41.0 34.0 41.0 16-17 38.47174722492325 40.0 38.0 41.0 34.0 41.0 18-19 38.530752512250196 40.0 38.0 41.0 34.0 41.0 20-21 38.556220927260576 40.0 38.0 41.0 34.0 41.0 22-23 38.47948198913496 40.0 38.0 41.0 34.0 41.0 24-25 38.419749638403204 40.0 38.0 41.0 34.0 41.0 26-27 38.20294870929747 40.0 38.0 41.0 33.5 41.0 28-29 38.08426228642264 40.0 37.5 41.0 33.0 41.0 30-31 37.960094551762964 40.0 37.0 41.0 33.0 41.0 32-33 37.775027053094405 40.0 37.0 41.0 33.0 41.0 34-35 37.87301185005032 40.0 37.0 41.0 33.0 41.0 36-37 37.84846805176578 40.0 37.0 41.0 33.0 41.0 38-39 37.80342158380184 40.0 37.0 41.0 33.0 41.0 40-41 37.729071081073705 40.0 37.0 41.0 33.0 41.0 42-43 37.79358610197549 40.0 37.0 41.0 33.0 41.0 44-45 37.799208745720534 40.0 37.0 41.0 33.0 41.0 46-47 37.73275412646419 40.0 37.0 41.0 32.5 41.0 48-49 37.63893811975075 40.0 37.0 41.0 32.0 41.0 50-51 37.51869823170499 40.0 36.0 41.0 32.0 41.0 52-53 37.33684719489807 39.0 36.0 41.0 31.0 41.0 54-55 37.1854476261544 39.0 36.0 41.0 31.0 41.0 56-57 37.04776473003922 39.0 35.0 41.0 31.0 41.0 58-59 36.875650523152885 39.0 35.0 40.0 31.0 41.0 60-61 36.6855691384776 38.5 35.0 40.0 31.0 41.0 62-63 36.46951521596 38.0 35.0 40.0 30.5 41.0 64-65 36.16107538321121 38.0 34.5 40.0 30.0 41.0 66-67 35.863407992326636 37.0 34.0 40.0 29.5 41.0 68-69 35.54702508568694 37.0 34.0 39.0 29.0 41.0 70-71 35.234242835040746 36.0 34.0 39.0 29.0 40.5 72-73 34.95003838421816 36.0 34.0 39.0 29.0 40.0 74-75 34.61948602263922 35.0 33.5 38.0 29.0 40.0 76-77 33.36189943190733 34.5 31.5 36.5 27.0 39.0 78-79 34.08865590509626 35.0 33.0 37.0 29.0 39.0 80-81 34.01111500506862 35.0 33.0 36.5 29.0 39.0 82-83 33.787954388601015 35.0 33.0 36.0 29.0 37.5 84-85 33.55214539181566 35.0 33.0 36.0 29.0 37.0 86-87 33.355894867729035 35.0 33.0 35.0 29.0 37.0 88-89 33.190497743431436 35.0 33.0 35.0 29.0 36.0 90-91 33.061763224965276 35.0 33.0 35.0 29.0 36.0 92-93 33.014942025245354 35.0 33.0 35.0 29.0 36.0 94-95 32.94858447128317 34.0 33.0 35.0 29.0 35.5 96-97 32.997761540206014 34.0 32.5 35.0 29.0 35.0 98-99 33.1268856275499 34.0 33.0 35.0 29.0 35.0 100 31.846582303574028 34.0 31.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 10.0 20 95.0 21 571.0 22 2712.0 23 9187.0 24 24491.0 25 51020.0 26 91312.0 27 142365.0 28 202508.0 29 267377.0 30 336163.0 31 414662.0 32 508544.0 33 639995.0 34 843797.0 35 1151554.0 36 1750917.0 37 2857713.0 38 3295867.0 39 1483583.0 40 50838.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.61146483062112 20.403821940583853 13.639738950399938 24.34497427839509 2 15.196493380487544 21.450880460111073 40.0615492006002 23.291076958801185 3 18.48282223877258 25.68659364371862 30.45636746703065 25.37421665047815 4 12.879088811305401 17.616515348185896 38.34260335278191 31.161792487726796 5 13.220887224576353 37.84384527462632 35.76974907054973 13.165518430247602 6 30.85837206116549 37.61289772206366 18.293216738635714 13.23551347813513 7 27.064827364545213 32.3346042221449 22.97974164769065 17.620826765619242 8 24.896495893711172 36.60534990975403 20.984220849349235 17.513933347185564 9 25.58094934013721 16.453480407651952 21.15085111557041 36.81471913664043 10-11 24.577383748363307 26.599470382367507 28.779387460146822 20.043758409122365 12-13 25.019335893045696 24.04684932020841 29.02532586068175 21.908488926064145 14-15 22.031548389997084 25.600318860822984 26.418001477492314 25.950131271687617 16-17 21.965729434373934 28.7245197016797 27.143690863253273 22.16606000069309 18-19 21.93449544301427 28.08700406396789 28.69107525323028 21.28742523978756 20-21 22.565717088074777 27.298911342418563 28.54062212584975 21.5947494436569 22-23 22.392022915517494 27.229697645152385 28.361266555954074 22.01701288337605 24-25 22.212624102857152 27.30139984134834 28.43558358025425 22.05039247554026 26-27 22.18924696484911 27.44670782350086 28.338410887602826 22.0256343240472 28-29 22.109391463614134 27.627913835386593 28.29892787837035 21.963766822628923 30-31 22.327321451312265 27.44799097963993 28.25414822627132 21.970539342776483 32-33 22.123087960542552 27.545792308995836 28.22532956004994 22.10579017041167 34-35 22.264762973870177 27.53038625683305 28.27955427551242 21.92529649378435 36-37 22.27340388265082 27.527079884506257 28.18868978500771 22.010826447835214 38-39 22.178574062696928 27.660893630142574 28.19338473035246 21.96714757680803 40-41 22.339611904786764 27.51442547908428 28.073916629153516 22.072045986975443 42-43 22.242062740500295 27.643101288089532 27.888466389775896 22.22636958163427 44-45 22.331962360632005 27.687989522725836 27.80295586630221 22.177092250339957 46-47 22.299391653535228 27.697533577912164 27.64863626816854 22.35443850038407 48-49 22.281326788823765 27.848311388229558 27.581239403337676 22.289122419609 50-51 22.299681494417197 27.804756126500134 27.59166894922562 22.30389342985704 52-53 22.413361360895358 27.790844790594683 27.44437220599344 22.351421642516524 54-55 22.390309759742273 27.71814916060903 27.496062440670173 22.395478638978524 56-57 22.42335062654494 27.76477946164706 27.46830575970513 22.34356415210287 58-59 22.34273691079745 27.899511699186746 27.477138545149582 22.280612844866226 60-61 22.44619742947183 27.79084955261853 27.519307729783716 22.243645288125926 62-63 22.45099952085738 27.875236405560894 27.382689152259974 22.29107492132175 64-65 22.35228168217875 27.87337000301809 27.41227447524649 22.362073839556675 66-67 22.440971197320557 27.824069630737615 27.308704304979347 22.426254866962484 68-69 22.304016214731924 27.857340564744863 27.43323203872644 22.40541118179677 70-71 22.294366141268252 27.722054659070412 27.44473381456858 22.53884538509276 72-73 22.38593082335297 27.76439657443413 27.393264760109375 22.45640784210352 74-75 22.301736392033288 27.8420417612869 27.4224579047519 22.433763941927907 76-77 22.379937981004314 27.763886739442945 27.348571917575658 22.50760336197708 78-79 22.263762308156092 27.7861822082343 27.336748374685644 22.613307108923962 80-81 22.323666120157732 27.825007870873208 27.38221637411598 22.46910963485308 82-83 22.284200248540134 27.842922528638503 27.48698495408156 22.385892268739802 84-85 22.43422235256962 27.797634500123646 27.365148486236084 22.40299466107065 86-87 22.286536542682985 27.832649120606156 27.446359160622702 22.434455176088154 88-89 22.321687798844856 27.76558160069658 27.414170583746838 22.498560016711725 90-91 22.34833476758564 27.822442234086747 27.402399311106617 22.426823687220995 92-93 22.371996470656715 27.760766927141116 27.499658534308224 22.367578067893945 94-95 22.169738584174404 27.897029704915198 27.535024377595395 22.398207333315 96-97 22.179060828948945 27.998256932045418 27.63057473684946 22.19210750215617 98-99 23.29016795449455 29.99568478175473 27.781139758482716 18.93300750526801 100 22.316390358087173 30.97408163090676 21.44340847874514 25.266119532260934 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2094.0 1 1930.5 2 2868.5 3 4220.0 4 5532.5 5 8896.5 6 12009.5 7 14159.5 8 15468.5 9 15091.0 10 13751.5 11 12191.5 12 12495.5 13 16109.0 14 25287.0 15 38322.5 16 49759.5 17 57085.5 18 60139.5 19 59679.0 20 56928.0 21 53890.5 22 53517.0 23 57642.5 24 66916.5 25 82976.5 26 105083.0 27 129947.5 28 157336.5 29 189221.0 30 223453.0 31 258156.5 32 293904.5 33 329912.0 34 363235.5 35 393238.5 36 427058.5 37 461480.0 38 487817.0 39 506141.5 40 523265.5 41 541094.5 42 554448.0 43 567221.0 44 581009.0 45 590232.5 46 595694.5 47 599164.0 48 597761.0 49 592012.0 50 581625.5 51 565792.0 52 545412.0 53 518407.5 54 488486.0 55 454771.5 56 418788.5 57 380083.0 58 336797.5 59 290939.5 60 241968.0 61 197656.0 62 158541.0 63 123275.5 64 94230.0 65 71537.5 66 54164.0 67 41927.0 68 32560.5 69 24260.0 70 17778.5 71 13004.5 72 9422.0 73 6516.0 74 4367.5 75 2881.0 76 1847.0 77 1146.5 78 719.0 79 470.0 80 312.0 81 218.0 82 163.5 83 111.5 84 75.5 85 55.5 86 46.5 87 42.0 88 31.0 89 19.5 90 12.5 91 9.5 92 6.0 93 2.0 94 0.5 95 0.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.1857764285817946E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 9.309546674633468E-4 18-19 0.0038406304722347195 20-21 0.0 22-23 0.001246147254318086 24-25 5.665592777162392E-4 26-27 0.013610095559378647 28-29 0.007500088345794906 30-31 5.925634914039617E-4 32-33 0.006810585427046279 34-35 0.004614185173913984 36-37 0.0019592278954581738 38-39 0.0014477857679425744 40-41 0.003832751304219162 42-43 0.00865466236039359 44-45 0.00947437049159719 46-47 0.008337722725432147 48-49 0.007713172383151857 50-51 0.03312191771479314 52-53 0.01199213406654437 54-55 6.089986554832183E-5 56-57 0.00733164902451834 58-59 0.006417667618188204 60-61 7.817521536099204E-5 62-63 0.005080720739683514 64-65 0.0021105058472360915 66-67 0.021882582864139216 68-69 0.029460590938047503 70-71 0.014248665287951991 72-73 0.010591232905205137 74-75 0.01557527610458558 76-77 0.0021457337215124578 78-79 0.0026681768231384983 80-81 0.001301784200087901 82-83 0.0215368640651865 84-85 7.274732845540043E-4 86-87 0.008074016679770236 88-89 8.565055112194351E-4 90-91 0.003128152001805283 92-93 0.0010565634103254292 94-95 7.710018068451897E-4 96-97 0.0025019003553863354 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 260.0 20-21 1035.0 22-23 2324.0 24-25 5530.0 26-27 7053.0 28-29 12450.0 30-31 23390.0 32-33 30888.0 34-35 42744.0 36-37 62822.0 38-39 75959.0 40-41 83172.0 42-43 92852.0 44-45 109714.0 46-47 110768.0 48-49 104025.0 50-51 98239.0 52-53 98984.0 54-55 108704.0 56-57 115451.0 58-59 117595.0 60-61 117039.0 62-63 117449.0 64-65 125871.0 66-67 134316.0 68-69 136614.0 70-71 137451.0 72-73 134194.0 74-75 139767.0 76-77 141309.0 78-79 152032.0 80-81 156762.0 82-83 154932.0 84-85 158522.0 86-87 170115.0 88-89 182991.0 90-91 197734.0 92-93 220273.0 94-95 271065.0 96-97 580951.0 98-99 977675.0 100-101 8414264.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.97569537828663 #Duplication Level Percentage of deduplicated Percentage of total 1 87.9500592414472 72.0976726487914 2 7.917463752627155 12.980791935079793 3 2.204899561307203 5.422445243323113 4 0.8804959448991224 2.887170694434684 5 0.398350013707636 1.6327509688816737 6 0.2179282378566014 1.071889130451573 7 0.12880524006588215 0.7391229385937486 8 0.08063254560361405 0.5287927196782136 9 0.05370778574696632 0.39624597754520363 >10 0.1646632850819466 2.0102205807741598 >50 0.0023060081607304663 0.12693192336440726 >100 6.572292039321772E-4 0.08388694240150689 >500 3.11542920699314E-5 0.02207829668052802 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.079503174626211E-6 0.0 7.079503174626211E-6 0.0 3 0.0 7.079503174626211E-6 0.0 7.079503174626211E-6 0.0 4 0.0 2.1238509523878634E-5 0.0 1.4159006349252422E-5 0.0 5 0.0 2.1238509523878634E-5 0.0 2.8318012698504844E-5 0.0 6 0.0 2.1238509523878634E-5 0.0 4.247701904775727E-5 7.079503174626211E-6 7 0.0 2.1238509523878634E-5 0.0 4.247701904775727E-5 7.079503174626211E-6 8 0.0 2.8318012698504844E-5 0.0 5.663602539700969E-5 1.4159006349252422E-5 9 0.0 1.2035155396864559E-4 0.0 7.787453492088833E-5 4.247701904775727E-5 10-11 0.0 1.2035155396864559E-4 0.0 9.557329285745385E-5 4.247701904775727E-5 12-13 0.0 1.238913055559587E-4 0.0 1.0973229920670627E-4 4.247701904775727E-5 14-15 0.0 1.7344782777834218E-4 0.0 1.238913055559587E-4 9.557329285745385E-5 16-17 0.0 1.840670825402815E-4 0.0 1.274310571432718E-4 1.3451056031789802E-4 18-19 0.0 1.982260888895339E-4 0.0 1.4512981507983734E-4 1.6636832460371597E-4 20-21 7.079503174626211E-6 2.2654410158803875E-4 0.0 1.6636832460371597E-4 1.7344782777834218E-4 22-23 7.079503174626211E-6 2.548621142865436E-4 0.0 1.840670825402815E-4 2.0530559206416012E-4 24-25 7.079503174626211E-6 2.7964037539773536E-4 0.0 2.2300435000072565E-4 2.584018658738567E-4 26-27 7.079503174626211E-6 2.8318012698504846E-4 0.0 2.7964037539773536E-4 2.7256087222310915E-4 28-29 7.079503174626211E-6 2.8318012698504846E-4 0.0 5.451217444462183E-4 2.7610062381042225E-4 30-31 7.079503174626211E-6 2.973391333343009E-4 0.0 0.001472536660322252 2.8318012698504846E-4 32-33 7.079503174626211E-6 2.973391333343009E-4 0.0 0.003047726116676584 3.114981396835533E-4 34-35 7.079503174626211E-6 3.4689565555668435E-4 0.0 0.00512910005001669 3.185776428581795E-4 36-37 7.079503174626211E-6 4.0707143254100714E-4 0.0 0.008573278344472341 3.256571460328057E-4 38-39 7.079503174626211E-6 4.2477019047757267E-4 0.0 0.013815650445283052 3.5397515873131056E-4 40-41 7.079503174626211E-6 4.530882031760775E-4 0.0 0.019663320067524304 3.610546619059368E-4 42-43 7.079503174626211E-6 4.743267126999562E-4 0.0 0.025344621365161836 3.610546619059368E-4 44-45 7.079503174626211E-6 5.097242285730872E-4 0.0 0.03182944627311944 3.68134165080563E-4 46-47 7.079503174626211E-6 5.309627380969659E-4 0.0 0.03901160224377774 3.822931714298154E-4 48-49 7.079503174626211E-6 5.380422412715921E-4 0.0 0.0465654321311039 4.1061118412832025E-4 50-51 7.079503174626211E-6 5.840590119066625E-4 0.0 0.054108642763668134 4.1415093571563335E-4 52-53 7.079503174626211E-6 5.875987634939756E-4 0.0 0.06205892482877337 4.6724720952533E-4 54-55 7.079503174626211E-6 5.875987634939756E-4 0.0 0.06966231123832192 5.203434833350266E-4 56-57 7.079503174626211E-6 5.875987634939756E-4 0.0 0.07604802310183476 5.274229865096528E-4 58-59 7.079503174626211E-6 5.911385150812887E-4 0.0 0.0825434672645543 5.309627380969659E-4 60-61 7.079503174626211E-6 6.123770246051673E-4 0.0 0.08860352198203433 5.34502489684279E-4 62-63 7.079503174626211E-6 6.300757825417328E-4 0.0 0.09505648912570613 5.875987634939756E-4 64-65 7.079503174626211E-6 6.796323047641163E-4 0.0 0.10172892086779134 5.875987634939756E-4 66-67 7.079503174626211E-6 6.796323047641163E-4 0.0 0.10827746130432059 5.946782666686018E-4 68-69 7.079503174626211E-6 7.008708142879949E-4 0.0 0.11466317316783342 6.01757769843228E-4 70-71 7.079503174626211E-6 7.256490753991867E-4 0.0 0.12006483409007322 6.229962793671066E-4 72-73 7.079503174626211E-6 7.504273365103784E-4 0.0 0.1245143018353258 7.150298206372473E-4 74-75 7.079503174626211E-6 7.71665846034257E-4 0.0 0.1282947565305762 7.150298206372473E-4 76-77 7.079503174626211E-6 7.858248523835094E-4 0.0 0.1318026503536035 7.256490753991867E-4 78-79 7.079503174626211E-6 7.929043555581357E-4 0.0 0.1341070286369443 7.36268330161126E-4 80-81 7.079503174626211E-6 7.929043555581357E-4 0.0 0.13492471125361366 7.681260944469439E-4 82-83 7.079503174626211E-6 8.247621198439536E-4 0.0 0.1355335485266315 8.318416230185798E-4 84-85 7.079503174626211E-6 8.353813746058929E-4 0.0 0.13576363237980685 8.353813746058929E-4 86-87 7.079503174626211E-6 8.566198841297715E-4 0.0 0.13585212616948966 8.353813746058929E-4 88 7.079503174626211E-6 8.920174000029026E-4 0.0 0.13585566592107698 8.495403809551453E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14725 0.0 42.765022 1 GTATCAA 25780 0.0 32.32773 1 TCAACGC 27495 0.0 29.125118 4 ATCAACG 27535 0.0 29.067636 3 CAACGCA 27925 0.0 28.646313 5 AACGCAG 29325 0.0 27.42312 6 TATCAAC 30650 0.0 26.417421 2 ACGCAGA 34695 0.0 23.056587 7 CGCAGAG 35280 0.0 22.650265 8 GTACATG 35255 0.0 21.453283 1 TACATGG 35590 0.0 20.751595 2 ACATGGG 36290 0.0 19.919554 3 GCAGAGT 43030 0.0 18.314917 9 GTGGTAT 8555 0.0 18.018324 1 CATGGGG 28240 0.0 18.009773 4 GAGTACT 23945 0.0 17.66085 12-13 AGAGTAC 37815 0.0 16.770134 10-11 CAGAGTA 42225 0.0 16.598242 10-11 GAGTACA 27270 0.0 15.699978 1 GTACTTT 27690 0.0 15.341692 14-15 >>END_MODULE