##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140286_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6394945 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05407239624422 33.0 31.0 34.0 30.0 34.0 2 32.19070687863617 33.0 31.0 34.0 30.0 34.0 3 32.09171650420762 33.0 31.0 34.0 30.0 34.0 4 35.9750346562793 37.0 35.0 37.0 35.0 37.0 5 35.8450571506088 37.0 35.0 37.0 35.0 37.0 6 35.90145998128209 37.0 35.0 37.0 35.0 37.0 7 35.85640752187861 37.0 35.0 37.0 35.0 37.0 8 35.84957587594577 37.0 35.0 37.0 35.0 37.0 9 37.60427884837164 39.0 37.0 39.0 35.0 39.0 10-11 37.48677721231379 39.0 37.0 39.0 34.5 39.0 12-13 37.46069215607015 39.0 37.0 39.0 34.0 39.0 14-15 38.754061684658744 40.0 38.0 41.0 34.5 41.0 16-17 38.60074754356762 40.0 38.0 41.0 34.0 41.0 18-19 38.675429890327436 40.0 38.0 41.0 34.0 41.0 20-21 38.70685615329934 40.0 38.0 41.0 34.0 41.0 22-23 38.633858554751605 40.0 38.0 41.0 34.0 41.0 24-25 38.57647254083656 40.0 38.0 41.0 34.0 41.0 26-27 38.36947994232408 40.0 38.0 41.0 34.0 41.0 28-29 38.25866689210311 40.0 38.0 41.0 34.0 41.0 30-31 38.133223895720974 40.0 38.0 41.0 33.0 41.0 32-33 37.950555435690674 40.0 37.0 41.0 33.0 41.0 34-35 38.03799896053619 40.0 37.0 41.0 33.0 41.0 36-37 38.01142289144123 40.0 37.0 41.0 33.0 41.0 38-39 37.966000677327166 40.0 37.0 41.0 33.0 41.0 40-41 37.90047799312079 40.0 37.0 41.0 33.0 41.0 42-43 37.96818064368733 40.0 37.0 41.0 33.0 41.0 44-45 37.97566030335422 40.0 37.0 41.0 33.0 41.0 46-47 37.91419733833632 40.0 37.0 41.0 33.0 41.0 48-49 37.82764059355116 40.0 37.0 41.0 33.0 41.0 50-51 37.70593835143069 40.0 37.0 41.0 32.5 41.0 52-53 37.53153815189377 40.0 36.0 41.0 32.0 41.0 54-55 37.38621536076897 39.0 36.0 41.0 32.0 41.0 56-57 37.2436524263825 39.0 36.0 41.0 31.0 41.0 58-59 37.07389773487621 39.0 35.0 41.0 31.0 41.0 60-61 36.88538673683932 39.0 35.0 40.0 31.0 41.0 62-63 36.67849347939659 38.0 35.0 40.0 31.0 41.0 64-65 36.37905495481643 38.0 35.0 40.0 30.5 41.0 66-67 36.08964172852421 37.5 34.5 40.0 30.0 41.0 68-69 35.782546311318214 37.0 34.0 39.5 30.0 41.0 70-71 35.47737832690933 36.0 34.0 39.0 29.0 41.0 72-73 35.19596053551116 36.0 34.0 39.0 29.0 40.5 74-75 34.8677232349178 35.5 34.0 38.5 29.0 40.0 76-77 33.599601289328035 34.5 32.0 36.5 28.0 39.0 78-79 34.30078012287484 35.0 33.5 37.0 29.0 39.0 80-81 34.21080399173398 35.0 34.0 37.0 29.0 39.0 82-83 33.97912504631204 35.0 33.0 36.0 29.0 38.5 84-85 33.74301079661521 35.0 33.0 36.0 29.0 37.0 86-87 33.54306779126235 35.0 33.0 35.5 29.0 37.0 88-89 33.37290689479258 35.0 33.0 35.0 29.0 36.5 90-91 33.24288313159214 35.0 33.0 35.0 29.0 36.0 92-93 33.18510706188961 35.0 33.0 35.0 29.0 36.0 94-95 33.11528184487574 35.0 33.0 35.0 29.0 36.0 96-97 33.15252827858406 35.0 33.0 35.0 29.0 35.0 98-99 33.27118321537901 35.0 33.0 35.0 29.0 35.0 100 32.05496020509089 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 3.0 20 32.0 21 191.0 22 959.0 23 3407.0 24 9155.0 25 19720.0 26 36276.0 27 56751.0 28 81159.0 29 108608.0 30 138255.0 31 170690.0 32 211765.0 33 267300.0 34 353452.0 35 485267.0 36 741707.0 37 1248611.0 38 1564674.0 39 863207.0 40 33754.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.35439788770662 20.48697838683523 14.046532065561157 24.112091659896997 2 14.847899395538194 21.281731117312187 40.83999158710513 23.03037790004449 3 18.225163653286156 25.991888564082565 30.691805154151997 25.091142628479286 4 12.606941889257845 17.911147007519222 38.628229015261276 30.853682087961666 5 12.993372108751522 37.94320357720043 35.88901859202855 13.174405722019502 6 30.196006376911765 37.98131180174341 18.498235715866205 13.324446105478623 7 26.647703772276383 32.567269929608464 22.99871226413988 17.786314033975273 8 24.645653715551894 36.77934681220871 21.09300392732072 17.481995544918682 9 25.40231385883694 16.63007265895172 21.296696062280443 36.6709174199309 10-11 24.328778433590905 26.772270910852242 28.802952957374927 20.09599769818192 12-13 24.855835351203176 24.210810257164056 29.104511453968723 21.828842937664046 14-15 21.938961163856767 25.79269250947428 26.550329987200826 25.718016339468125 16-17 21.706629536925163 29.006031159177738 27.2815951715073 22.005744132389797 18-19 21.666870611361038 28.17263338471697 28.938227432607356 21.222268571314636 20-21 22.393322221007676 27.341614564934307 28.87561122873454 21.389451985323475 22-23 22.165510262968784 27.34475739763423 28.695595396071848 21.79413694332514 24-25 22.06242281615169 27.394852037731805 28.783406577334798 21.759318568781712 26-27 22.000807047747507 27.63791897487878 28.65268331638877 21.70859066098494 28-29 21.90766482666692 27.678012283558246 28.67877099280209 21.735551896972748 30-31 22.02562299330137 27.575637449139844 28.71490341256618 21.683836144992608 32-33 21.889901306409758 27.67602838714735 28.656612904990293 21.7774574014526 34-35 22.0817812837822 27.60795107802285 28.679148824370632 21.631118813824322 36-37 21.95370944649944 27.737177633106157 28.5034567094391 21.805656210955306 38-39 21.85249340362621 27.663189667563294 28.632465195786533 21.851851733023963 40-41 22.01688334114992 27.555455058513484 28.566308496180238 21.861353104156358 42-43 21.96842872783141 27.624621925720206 28.45614207522211 21.95080727122627 44-45 22.017469170265258 27.815227697690148 28.202935437682903 21.964367694361695 46-47 22.112687855846154 27.675180150876383 27.94688050515644 22.265251488121017 48-49 22.073854213849817 27.81454934382037 27.930067245834362 22.18152919649545 50-51 21.993678272717922 27.925516309657223 27.911476973304104 22.169328444320755 52-53 22.060744693271296 27.896818773431114 27.886657182515144 22.155779350782442 54-55 22.087820865930638 27.831463802190765 27.835210083417195 22.245505248461406 56-57 22.177767326110384 27.911866314699708 27.72041719101552 22.18994916817439 58-59 22.033712779702157 28.071867884487762 27.843475091739688 22.05094424407039 60-61 22.168689694053516 28.079378072509254 27.714242334990068 22.03768989844716 62-63 22.049693299623183 28.203744940325393 27.649005624225847 22.097556135825574 64-65 22.013439207015804 28.13666681269678 27.668344534212913 22.1815494460745 66-67 22.114629249362324 28.12353499316268 27.508166594024797 22.253669163450205 68-69 22.074896314091895 28.061843301238653 27.628526226781535 22.234734157887917 70-71 22.052919851794748 27.854836174472062 27.719126755767626 22.373117217965564 72-73 22.146826956875433 27.79398917552836 27.73787878404726 22.32130508354895 74-75 22.09765313868211 27.976808044131275 27.640595571317032 22.284943245869584 76-77 22.243916860175773 27.885784160158856 27.524116415848233 22.346182563817138 78-79 22.17717469415232 27.832830258854685 27.551177202356687 22.438817844636304 80-81 22.11425871252389 27.860477212131546 27.61043604350968 22.414828031834887 82-83 22.17140203617723 27.831187582534366 27.747053517299015 22.250356863989385 84-85 22.264987004871397 27.840473158392232 27.623566814318256 22.270973022418108 86-87 22.137229907011253 27.845469712273648 27.750194882758706 22.2671054979564 88-89 22.230957960398058 27.757808053721973 27.72933561676425 22.28189836911572 90-91 22.262664695992047 27.802998114640904 27.70340942661904 22.23092776274801 92-93 22.263255721026745 27.729794241818368 27.795485296317107 22.211464740837776 94-95 22.062278888429105 27.7925561840971 27.89798245666408 22.24718247080971 96-97 22.068240756602847 27.939627723988824 27.99793245630099 21.99419906310734 98-99 23.194594494331845 29.852507428199047 28.191330328285737 18.761567749183374 100 29.58359508541894 41.23978062167992 29.17662429290114 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 918.0 1 851.0 2 1290.5 3 1928.5 4 2664.0 5 4424.0 6 5962.5 7 7069.5 8 7851.0 9 7755.5 10 7064.0 11 6317.0 12 6752.0 13 9191.5 14 14853.5 15 22448.5 16 29016.5 17 33273.0 18 34793.0 19 34153.0 20 32511.5 21 31067.5 22 31109.5 23 33661.0 24 39155.5 25 47994.5 26 59953.5 27 73299.0 28 87279.0 29 103254.5 30 118892.0 31 133423.0 32 148447.0 33 162313.0 34 175936.5 35 189858.0 36 203718.0 37 216776.0 38 227243.5 39 235351.0 40 243874.5 41 252678.5 42 258139.0 43 262847.5 44 269692.5 45 276600.5 46 280430.0 47 281208.0 48 279747.0 49 274948.0 50 268853.5 51 260601.0 52 247910.5 53 234101.5 54 220768.5 55 206260.5 56 189145.0 57 170338.0 58 151921.0 59 131656.0 60 110706.0 61 90773.0 62 72686.0 63 56768.5 64 42663.5 65 32223.0 66 24349.0 67 18689.5 68 14403.5 69 10735.5 70 7905.0 71 5698.0 72 4091.5 73 2865.0 74 1949.5 75 1332.0 76 898.5 77 589.0 78 383.5 79 253.5 80 170.0 81 107.0 82 76.5 83 57.5 84 39.5 85 25.0 86 17.0 87 14.5 88 10.0 89 7.0 90 7.5 91 6.0 92 4.5 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.5965907447210255E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.001118070601076319 18-19 0.0037138708777010587 20-21 0.0 22-23 0.0013293317840101717 24-25 4.6925995359019056E-4 26-27 0.0138479416208335 28-29 0.007523111452430215 30-31 7.608278151746872E-4 32-33 0.0070592190567750086 34-35 0.004631530527200165 36-37 0.002123294545168837 38-39 0.0016282126420044051 40-41 0.004063974076055089 42-43 0.009051130794481606 44-45 0.010349706839593844 46-47 0.008870651424655908 48-49 0.008096354066097416 50-51 0.03551829350526425 52-53 0.013031082547454716 54-55 8.732582645598787E-5 56-57 0.008085264587635617 58-59 0.006802840730589384 60-61 1.3547947269221556E-4 62-63 0.005490357935709462 64-65 0.002347517638729974 66-67 0.024688395574357085 68-69 0.03260197933273477 70-71 0.015389241172079958 72-73 0.011261659902538988 74-75 0.016714789773619926 76-77 0.002212717724696252 78-79 0.002867129351348328 80-81 0.0018217231064800226 82-83 0.02521517729538273 84-85 9.468127914408124E-4 86-87 0.009657823835103704 88-89 7.478429607818145E-4 90-91 0.0032970917886094415 92-93 0.0011461530552563759 94-95 8.152041311330476E-4 96-97 0.002953546618779831 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 157.0 20-21 424.0 22-23 866.0 24-25 2005.0 26-27 2644.0 28-29 9415.0 30-31 20274.0 32-33 25411.0 34-35 34452.0 36-37 51299.0 38-39 57586.0 40-41 59745.0 42-43 64181.0 44-45 73270.0 46-47 72254.0 48-49 66547.0 50-51 58288.0 52-53 55652.0 54-55 59937.0 56-57 63814.0 58-59 64671.0 60-61 63349.0 62-63 62638.0 64-65 65879.0 66-67 70060.0 68-69 68820.0 70-71 64565.0 72-73 61810.0 74-75 63308.0 76-77 62454.0 78-79 66644.0 80-81 67386.0 82-83 65792.0 84-85 66724.0 86-87 70702.0 88-89 76626.0 90-91 83435.0 92-93 92468.0 94-95 106976.0 96-97 237099.0 98-99 1319644.0 100-101 2715674.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.73573549093426 #Duplication Level Percentage of deduplicated Percentage of total 1 90.13801566791409 77.2804906898197 2 6.863378126594666 11.768735432719685 3 1.7121627583048165 4.403806000903505 4 0.615505045375781 2.110831110546938 5 0.2633224510800733 1.128807200731282 6 0.14651269895984415 0.7536824402450446 7 0.0766247531661143 0.4598635698655672 8 0.04707799568431532 0.32290132683470424 9 0.03059654897564538 0.23608958669202135 >10 0.10423951962907672 1.336826136466087 >50 0.002152861265659693 0.12006505320728894 >100 3.83093734930576E-4 0.05897831555822155 >500 2.847931503298027E-5 0.01892313640988703 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.127470212800892E-5 2 0.0 4.6912053192013376E-5 0.0 0.0 3.127470212800892E-5 3 0.0 6.254940425601783E-5 0.0 0.0 3.127470212800892E-5 4 0.0 1.2509880851203567E-4 0.0 0.0 6.254940425601783E-5 5 3.127470212800892E-5 1.4073615957604013E-4 0.0 0.0 6.254940425601783E-5 6 3.127470212800892E-5 1.4073615957604013E-4 0.0 1.563735106400446E-5 7.81867553200223E-5 7 3.127470212800892E-5 1.4073615957604013E-4 0.0 1.563735106400446E-5 9.382410638402675E-5 8 3.127470212800892E-5 1.4073615957604013E-4 0.0 3.127470212800892E-5 9.382410638402675E-5 9 3.127470212800892E-5 3.5965907447210255E-4 0.0 6.254940425601783E-5 9.382410638402675E-5 10-11 6.254940425601783E-5 3.5965907447210255E-4 0.0 6.254940425601783E-5 1.0946145744803122E-4 12-13 6.254940425601783E-5 3.5965907447210255E-4 0.0 1.0164278191602898E-4 1.6419218617204682E-4 14-15 7.036807978802006E-5 4.06571127664116E-4 0.0 1.0946145744803122E-4 2.423789414920691E-4 16-17 7.81867553200223E-5 4.06571127664116E-4 0.0 1.2509880851203567E-4 3.2838437234409363E-4 18-19 7.81867553200223E-5 4.3002715426012267E-4 0.0 2.8147231915208026E-4 3.5965907447210255E-4 20-21 7.81867553200223E-5 4.5348318085612936E-4 0.0 9.147850372442608E-4 3.75296425536107E-4 22-23 1.0164278191602898E-4 5.160325851121471E-4 0.0 0.0021188610691726044 4.222084787281204E-4 24-25 1.4073615957604013E-4 5.78581989368165E-4 0.0 0.00462865591494532 4.847578829841383E-4 26-27 1.563735106400446E-4 5.942193404321694E-4 0.0 0.009491872095850708 4.847578829841383E-4 28-29 1.563735106400446E-4 5.942193404321694E-4 0.0 0.029468588080116404 4.847578829841383E-4 30-31 1.876482127680535E-4 6.724060957521917E-4 0.0 0.03247877815993726 4.847578829841383E-4 32-33 2.03285563832058E-4 6.724060957521917E-4 0.0 0.03885881739405108 5.316699361761516E-4 34-35 2.423789414920691E-4 7.271368244762073E-4 0.0 0.04694332789414139 5.316699361761516E-4 36-37 2.8147231915208026E-4 7.896862287322252E-4 0.0 0.05903100026661684 5.316699361761516E-4 38-39 2.8147231915208026E-4 8.13142255328232E-4 0.0 0.08832757748502919 5.394886117081538E-4 40-41 2.8147231915208026E-4 9.069663617122587E-4 0.0 0.11910188437898997 5.551259627721583E-4 42-43 2.8147231915208026E-4 9.460597393722698E-4 0.0 0.1395868142728358 5.864006649001672E-4 44-45 2.8147231915208026E-4 0.0011102519255443166 0.0 0.16361360418267867 6.098566914961739E-4 46-47 2.8147231915208026E-4 0.00122753205852435 0.0 0.18878973939572585 6.176753670281761E-4 48-49 2.8147231915208026E-4 0.0012353507340563522 0.0 0.2122066726140725 6.645874202201895E-4 50-51 2.8147231915208026E-4 0.0013526308670363857 0.0 0.2345133539068749 6.724060957521917E-4 52-53 3.2838437234409363E-4 0.001360449542568388 0.0 0.28617134314681364 6.880434468161962E-4 54-55 3.2838437234409363E-4 0.001360449542568388 0.0 0.3461171284506747 6.958621223481984E-4 56-57 3.2838437234409363E-4 0.001360449542568388 0.0 0.4042724370577073 7.036807978802006E-4 58-59 3.2838437234409363E-4 0.0013760868936323924 0.0 0.44370983644112655 7.036807978802006E-4 60-61 3.440217234080981E-4 0.0014229989468244057 0.0 0.47299859498400687 7.193181489442051E-4 62-63 3.440217234080981E-4 0.0014699110000164191 0.0 0.49514108409063723 7.50592851072214E-4 64-65 3.440217234080981E-4 0.0016575592127844728 0.0 0.5036556217449877 7.584115266042162E-4 66-67 3.440217234080981E-4 0.0016575592127844728 0.0 0.5112631930376258 7.662302021362185E-4 68-69 3.440217234080981E-4 0.0016888339149124818 0.0 0.5185032865802599 7.662302021362185E-4 70-71 3.440217234080981E-4 0.0017044712659764862 0.0 0.5248598697877778 7.975049042642275E-4 72-73 3.440217234080981E-4 0.0017122899415084884 0.0 0.5300123769633671 8.13142255328232E-4 74-75 3.440217234080981E-4 0.0017748393457645063 0.0 0.5339764454580923 8.209609308602342E-4 76-77 3.440217234080981E-4 0.0018139327234245174 0.0 0.5373541132879173 8.287796063922364E-4 78-79 3.440217234080981E-4 0.0018452074255525263 0.0 0.539848270782626 8.287796063922364E-4 80-81 3.440217234080981E-4 0.0018608447766165308 0.0 0.5406535943624222 8.522356329882431E-4 82-83 3.440217234080981E-4 0.001868663452148533 0.0 0.5412009016496624 9.069663617122587E-4 84-85 3.440217234080981E-4 0.0018764821276805353 0.0 0.5414198245645584 9.147850372442609E-4 86-87 3.440217234080981E-4 0.0018764821276805353 0.0 0.5415214673464744 9.226037127762632E-4 88 3.440217234080981E-4 0.0019859435851285663 0.0 0.5415371046975385 9.226037127762632E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7255 0.0 45.73639 1 GTATCAA 13210 0.0 34.165108 1 ATCAACG 15165 0.0 28.81291 3 TCAACGC 15185 0.0 28.74792 4 CAACGCA 15630 0.0 27.929438 5 TATCAAC 15970 0.0 27.617685 2 AACGCAG 16005 0.0 27.377682 6 ACGCAGA 18615 0.0 23.53907 7 CGCAGAG 19085 0.0 22.894827 8 GTACATG 18300 0.0 21.004517 1 TACATGG 18160 0.0 20.64633 2 ACATGGG 18385 0.0 19.723545 3 GCAGAGT 22810 0.0 19.137972 9 GAGTACT 12700 0.0 18.723991 12-13 GTGGTAT 4170 0.0 18.317442 1 CATGGGG 13685 0.0 18.185102 4 CAGAGTA 21955 0.0 17.10593 10-11 TGGTATC 4045 0.0 17.056059 2 AGAGTAC 20030 0.0 16.904648 10-11 GTACTTT 14690 0.0 16.313778 14-15 >>END_MODULE