##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140285_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6806947 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.061105514704316 33.0 31.0 34.0 30.0 34.0 2 32.195021791707795 33.0 31.0 34.0 30.0 34.0 3 32.10143166973388 33.0 31.0 34.0 30.0 34.0 4 35.9841088817057 37.0 35.0 37.0 35.0 37.0 5 35.85363585172618 37.0 35.0 37.0 35.0 37.0 6 35.9086756515072 37.0 35.0 37.0 35.0 37.0 7 35.85890840636779 37.0 35.0 37.0 35.0 37.0 8 35.85289146514583 37.0 35.0 37.0 35.0 37.0 9 37.60954419066286 39.0 37.0 39.0 35.0 39.0 10-11 37.48981349494862 39.0 37.0 39.0 34.5 39.0 12-13 37.46250874290633 39.0 37.0 39.0 34.0 39.0 14-15 38.7620007177961 40.0 38.0 41.0 34.5 41.0 16-17 38.60917794717661 40.0 38.0 41.0 34.0 41.0 18-19 38.67684117417103 40.0 38.0 41.0 34.0 41.0 20-21 38.70244375003212 40.0 38.0 41.0 34.0 41.0 22-23 38.62848490261075 40.0 38.0 41.0 34.0 41.0 24-25 38.573389896558105 40.0 38.0 41.0 34.0 41.0 26-27 38.36818031195576 40.0 38.0 41.0 34.0 41.0 28-29 38.25454763321719 40.0 38.0 41.0 34.0 41.0 30-31 38.13376291532533 40.0 38.0 41.0 33.0 41.0 32-33 37.95634195610124 40.0 37.0 41.0 33.0 41.0 34-35 38.04516566697254 40.0 37.0 41.0 33.0 41.0 36-37 38.01735122987246 40.0 37.0 41.0 33.0 41.0 38-39 37.965678973393146 40.0 37.0 41.0 33.0 41.0 40-41 37.90046515811257 40.0 37.0 41.0 33.0 41.0 42-43 37.97053036636051 40.0 37.0 41.0 33.0 41.0 44-45 37.974933409959206 40.0 37.0 41.0 33.0 41.0 46-47 37.91178692318478 40.0 37.0 41.0 33.0 41.0 48-49 37.82197750409507 40.0 37.0 41.0 33.0 41.0 50-51 37.69040576459766 40.0 37.0 41.0 32.0 41.0 52-53 37.51386291533349 39.5 36.0 41.0 32.0 41.0 54-55 37.36212628878352 39.0 36.0 41.0 31.5 41.0 56-57 37.2113022185809 39.0 35.5 41.0 31.0 41.0 58-59 37.03091574116477 39.0 35.0 41.0 31.0 41.0 60-61 36.83893638641881 39.0 35.0 40.0 31.0 41.0 62-63 36.62272232548822 38.0 35.0 40.0 31.0 41.0 64-65 36.3265350433946 38.0 35.0 40.0 30.5 41.0 66-67 36.03342864660232 37.0 34.5 40.0 30.0 41.0 68-69 35.722895788539034 37.0 34.0 39.5 30.0 41.0 70-71 35.41831733240107 36.0 34.0 39.0 29.0 41.0 72-73 35.13230547275522 36.0 34.0 39.0 29.0 40.0 74-75 34.8053998205529 35.0 34.0 38.5 29.0 40.0 76-77 33.545327162281666 34.5 32.0 36.5 28.0 39.0 78-79 34.24376158911235 35.0 33.0 37.0 29.0 39.0 80-81 34.15839406251324 35.0 33.5 36.5 29.0 39.0 82-83 33.93575930793861 35.0 33.0 36.0 29.0 38.0 84-85 33.70571226984508 35.0 33.0 36.0 29.0 37.0 86-87 33.51214996939938 35.0 33.0 35.0 29.0 37.0 88-89 33.35093481968208 35.0 33.0 35.0 29.0 36.5 90-91 33.22662777299241 35.0 33.0 35.0 29.0 36.0 92-93 33.17808071190001 35.0 33.0 35.0 29.0 36.0 94-95 33.1115885428246 35.0 33.0 35.0 29.0 36.0 96-97 33.150971263028154 35.0 33.0 35.0 29.0 35.0 98-99 33.271616978269805 35.0 33.0 35.0 29.0 35.0 100 32.080482727706006 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 6.0 20 37.0 21 226.0 22 1068.0 23 3785.0 24 10083.0 25 21515.0 26 38268.0 27 60808.0 28 87490.0 29 115704.0 30 147076.0 31 181820.0 32 224655.0 33 284882.0 34 379138.0 35 520029.0 36 799810.0 37 1338888.0 38 1656685.0 39 900172.0 40 34800.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.585324522138926 20.26000790075198 13.848822386893861 24.30584519021523 2 14.99077339664904 20.97792152634654 40.67162562012015 23.35967945688427 3 18.529378926151622 25.533016400956676 30.407717440487037 25.52988723240467 4 12.776697100770729 17.624362287527727 38.12976654585382 31.469174065847728 5 13.277641209781713 37.76939940916243 35.63903171274875 13.313927668307098 6 30.8283287647164 37.44921181257912 18.24418494811257 13.478274474591915 7 27.160913695963846 32.29199522194017 22.535110086798092 18.01198099529789 8 24.96008856834055 36.60724844779899 20.808344768954424 17.624318214906037 9 25.480468703517158 16.575566109152902 20.971501614453587 36.97246357287636 10-11 24.703512455730888 26.53733751709834 28.46712336676046 20.292026660410315 12-13 25.16339557219999 23.879868610700218 28.76686861231621 22.189867204783585 14-15 22.190902911393316 25.46224467444803 26.165357244591448 26.18149516956721 16-17 22.08315217475139 28.723175216139722 26.828901017301387 22.364771591807497 18-19 22.077214216517493 27.9367426734408 28.428054582899076 21.557988527142623 20-21 22.76969800299662 27.11681410897702 28.300498033290417 21.812989854735946 22-23 22.543653938395828 27.15109192608487 28.15459088246623 22.150663253053075 24-25 22.43881473253635 27.23883654209962 28.24912341060419 22.073225314759835 26-27 22.440786720438506 27.40860861108146 28.170403256425253 21.980201412054782 28-29 22.27320070963899 27.441583985326908 28.137795104103148 22.14742020093096 30-31 22.426953033606523 27.35298943726809 28.23445057267442 21.985606956450972 32-33 22.318516063099533 27.46671613004668 28.1079650685587 22.106802738295084 34-35 22.452131761529788 27.373516334137772 28.241681430545608 21.932670473786835 36-37 22.299636599455496 27.451967473260474 28.081612709455882 22.166783217828144 38-39 22.219025840211877 27.358021993753745 28.185677311924774 22.237274854109607 40-41 22.46317613095365 27.22264979755238 28.113685520203695 22.20048855129028 42-43 22.396771007877426 27.318741639161974 27.944650676315963 22.339836676644637 44-45 22.347908031777298 27.467573539781814 27.89605835726633 22.288460071174555 46-47 22.48080367890704 27.30651392609588 27.587930363433067 22.62475203156401 48-49 22.391872407366826 27.500334123204297 27.593817107711942 22.513976361716935 50-51 22.29658461994324 27.597529374749524 27.61186283202763 22.494023173279608 52-53 22.408708593192685 27.570727629977267 27.559906297317983 22.46065747951207 54-55 22.425049139275202 27.460771116944553 27.53066755274244 22.583512191037805 56-57 22.533057522001492 27.630799322243565 27.353508221084827 22.482634934670116 58-59 22.288897311593374 27.81045764775982 27.589520837480453 22.311124203166354 60-61 22.514570189887777 27.850891375978414 27.35566130823636 22.27887712589744 62-63 22.410451324501267 27.962994025286026 27.231676411851186 22.394878238361517 64-65 22.339024140065803 27.93632627870461 27.29281508097628 22.43183450025331 66-67 22.44733107105872 27.844846672189583 27.150768463514357 22.55705379323734 68-69 22.374852562614382 27.769686205118767 27.299160982687166 22.55630024957969 70-71 22.31415462413984 27.56469421461344 27.3688701046342 22.75228105661252 72-73 22.45840266603068 27.57409118197743 27.3045731710103 22.662932980981594 74-75 22.3773702133429 27.697287455005405 27.271861286653355 22.653481044998344 76-77 22.46292405357752 27.64717693903046 27.196213608001525 22.693685399390496 78-79 22.391911878258018 27.663105907839924 27.177696120371543 22.76728609353052 80-81 22.406934193477717 27.710831218283253 27.19881855056255 22.683416037676476 82-83 22.418653998663313 27.697721591008733 27.354245541290194 22.52937886903776 84-85 22.575289301610738 27.66639346835556 27.232557051290527 22.52576017874317 86-87 22.450068364523343 27.651289363421398 27.321587618987063 22.577054653068192 88-89 22.45061762220205 27.68365470413679 27.308586830911825 22.55714084274934 90-91 22.50563100485903 27.73438505375076 27.296670102136932 22.463313839253274 92-93 22.574971409264084 27.656338564837156 27.32869109953155 22.43999892636721 94-95 22.29093243375259 27.799832752610243 27.46621924067192 22.443015572965248 96-97 22.321299008113822 27.86469071024713 27.54625410336498 22.267756178274066 98-99 23.421540901204835 29.868473280477136 27.704442864923244 19.005542953394787 100 29.995876810289378 41.359636495724224 28.644486693986398 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1061.0 1 988.0 2 1390.5 3 1994.5 4 2711.5 5 4437.5 6 5951.5 7 7010.0 8 7748.5 9 7655.0 10 6994.5 11 6255.5 12 6440.0 13 8276.0 14 13096.0 15 19881.5 16 25849.0 17 29836.0 18 31374.0 19 31009.0 20 29622.0 21 28008.5 22 27742.5 23 30100.0 24 35435.0 25 43835.0 26 55037.5 27 67676.5 28 81571.0 29 97854.0 30 113616.0 31 128621.5 32 144640.0 33 160694.5 34 176614.0 35 191801.5 36 207726.0 37 222406.5 38 233653.0 39 242303.5 40 251903.0 41 261956.5 42 269465.5 43 277000.5 44 285214.5 45 294820.5 46 302669.5 47 307714.5 48 306835.5 49 301364.0 50 297369.5 51 290655.5 52 279992.0 53 266957.0 54 252136.0 55 235172.5 56 215568.0 57 194942.5 58 174382.5 59 151446.5 60 127636.0 61 105238.5 62 84997.5 63 67160.0 64 51425.0 65 39698.5 66 30664.5 67 23585.5 68 18114.0 69 13387.5 70 9673.5 71 7120.5 72 5272.5 73 3704.0 74 2507.5 75 1696.0 76 1164.5 77 762.5 78 496.5 79 355.0 80 242.0 81 152.5 82 109.0 83 80.5 84 55.0 85 36.5 86 25.5 87 20.0 88 18.5 89 14.5 90 10.0 91 7.0 92 4.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.9665359521676895E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 9.622522402480878E-4 18-19 0.004010608573858441 20-21 0.0 22-23 0.001476641080860131 24-25 5.878553925701985E-4 26-27 0.013497014777907946 28-29 0.0074454751375573605 30-31 8.108442008570181E-4 32-33 0.00687765843684579 34-35 0.004864119882806644 36-37 0.0020993710777341824 38-39 0.001574724956203433 40-41 0.004106582547632556 42-43 0.008523296626847771 44-45 0.010252344263320558 46-47 0.008859508691547172 48-49 0.008326562704340443 50-51 0.03512230602154388 52-53 0.013309927543220156 54-55 1.0649937853516495E-4 56-57 0.008712210991862033 58-59 0.006601445280888146 60-61 1.1866859599200207E-4 62-63 0.005728097829050923 64-65 0.0025425660704884354 66-67 0.024911990526059663 68-69 0.0335512142893606 70-71 0.01556854428425039 72-73 0.01179544703053961 74-75 0.017004906178967067 76-77 0.002405753889317723 78-79 0.002824991314099693 80-81 0.0017775232663383214 82-83 0.025373084173867477 84-85 8.983674885741971E-4 86-87 0.009901987345880924 88-89 8.234691555903288E-4 90-91 0.0031731699078478386 92-93 0.0012104536885681595 94-95 7.845369276158288E-4 96-97 0.002753934614956254 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 179.0 20-21 553.0 22-23 1155.0 24-25 2722.0 26-27 4262.0 28-29 10061.0 30-31 20972.0 32-33 26172.0 34-35 35909.0 36-37 53629.0 38-39 61344.0 40-41 62489.0 42-43 66472.0 44-45 75963.0 46-47 74401.0 48-49 69152.0 50-51 62211.0 52-53 60200.0 54-55 64355.0 56-57 68951.0 58-59 69615.0 60-61 68440.0 62-63 68360.0 64-65 72031.0 66-67 76078.0 68-69 73515.0 70-71 68961.0 72-73 65218.0 74-75 66195.0 76-77 65667.0 78-79 69808.0 80-81 71299.0 82-83 68688.0 84-85 69684.0 86-87 74601.0 88-89 79039.0 90-91 85300.0 92-93 94522.0 94-95 114845.0 96-97 254847.0 98-99 1415691.0 100-101 2893391.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.65899210263723 #Duplication Level Percentage of deduplicated Percentage of total 1 89.98452197063045 77.07983456841822 2 7.027339000741203 12.03909551934091 3 1.7166077400271806 4.411286665389428 4 0.6164195650429047 2.1120751461568505 5 0.25909997299802856 1.1097121270415824 6 0.1376947336809059 0.7076875262968473 7 0.0788134002304935 0.4725753499548081 8 0.0474898221751483 0.32543442421253393 9 0.03212406193111831 0.24765432905360635 >10 0.09749723288870497 1.2470616113659587 >50 0.0016519294499937605 0.0923009986855641 >100 6.606460843571789E-4 0.10829385227692384 >500 7.99241195002009E-5 0.04698788180675491 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.938174779383474E-5 0.0 0.0 0.0 3 0.0 2.938174779383474E-5 0.0 0.0 0.0 4 0.0 4.407262169075211E-5 0.0 0.0 0.0 5 0.0 5.876349558766948E-5 0.0 0.0 0.0 6 1.469087389691737E-5 5.876349558766948E-5 0.0 0.0 0.0 7 1.469087389691737E-5 5.876349558766948E-5 0.0 1.469087389691737E-5 0.0 8 1.469087389691737E-5 7.345436948458685E-5 0.0 1.469087389691737E-5 0.0 9 1.469087389691737E-5 1.3221786507225633E-4 0.0 2.938174779383474E-5 0.0 10-11 2.938174779383474E-5 1.3221786507225633E-4 0.0 4.407262169075211E-5 0.0 12-13 2.938174779383474E-5 1.3221786507225633E-4 0.0 4.407262169075211E-5 0.0 14-15 2.938174779383474E-5 1.6894504981454977E-4 0.0 4.407262169075211E-5 0.0 16-17 3.6727184742293426E-5 1.909813606599258E-4 0.0 5.876349558766948E-5 0.0 18-19 4.407262169075211E-5 2.2036310845376054E-4 0.0 7.345436948458685E-5 0.0 20-21 4.407262169075211E-5 2.497448562475953E-4 0.0 1.1752699117533896E-4 0.0 22-23 4.407262169075211E-5 2.938174779383474E-4 0.0 1.8363592371146712E-4 2.2036310845376054E-5 24-25 4.407262169075211E-5 3.378900996290995E-4 0.0 2.717811670929713E-4 4.407262169075211E-5 26-27 5.14180586392108E-5 3.5258097352601687E-4 0.0 4.407262169075211E-4 5.876349558766948E-5 28-29 5.876349558766948E-5 3.599264104744756E-4 0.0 0.0012707605920833525 5.876349558766948E-5 30-31 7.345436948458685E-5 3.96653595216769E-4 0.0 0.004253007993157578 5.876349558766948E-5 32-33 7.345436948458685E-5 4.260353430106037E-4 0.0 0.009571104343841667 5.876349558766948E-5 34-35 9.54906803299629E-5 4.994897124951905E-4 0.0 0.016615378377413545 5.876349558766948E-5 36-37 1.1752699117533896E-4 5.655986450313188E-4 0.0 0.028110987201751387 5.876349558766948E-5 38-39 1.1752699117533896E-4 5.729440819797774E-4 0.0 0.0579775338341844 7.345436948458685E-5 40-41 1.1752699117533896E-4 6.096712667220709E-4 0.0 0.08908545931090693 7.345436948458685E-5 42-43 1.1752699117533896E-4 6.390530145159056E-4 0.0 0.10907973868461147 7.345436948458685E-5 44-45 1.1752699117533896E-4 6.97816510103575E-4 0.0 0.13272470022169996 7.345436948458685E-5 46-47 1.2487242812379764E-4 7.345436948458685E-4 0.0 0.1583455842979239 7.345436948458685E-5 48-49 1.3221786507225633E-4 7.418891317943271E-4 0.0 0.18124865670321805 7.345436948458685E-5 50-51 1.3221786507225633E-4 8.079980643304553E-4 0.0 0.20432801959527525 7.345436948458685E-5 52-53 1.3221786507225633E-4 8.079980643304553E-4 0.0 0.2557020056127953 8.814524338150422E-5 54-55 1.3221786507225633E-4 8.15343501278914E-4 0.0 0.31470790061976395 1.0283611727842158E-4 56-57 1.3221786507225633E-4 8.373798121242901E-4 0.0 0.3725238348410822 1.0283611727842158E-4 58-59 1.3221786507225633E-4 8.373798121242901E-4 0.0 0.41239486659731595 1.0283611727842158E-4 60-61 1.469087389691737E-4 8.520706860212074E-4 0.0 0.4412624338047586 1.0283611727842158E-4 62-63 1.469087389691737E-4 8.520706860212074E-4 0.0 0.46468703223339336 1.0283611727842158E-4 64-65 1.469087389691737E-4 9.402159294027117E-4 0.0 0.4725833769529864 1.0283611727842158E-4 66-67 1.469087389691737E-4 9.54906803299629E-4 0.0 0.48022997681633195 1.0283611727842158E-4 68-69 1.469087389691737E-4 9.695976771965464E-4 0.0 0.4872522145390584 1.0283611727842158E-4 70-71 1.469087389691737E-4 9.916339880419226E-4 0.0 0.4935986720625267 1.0283611727842158E-4 72-73 1.469087389691737E-4 9.98979424990381E-4 0.0 0.4989241138501593 1.1752699117533896E-4 74-75 1.469087389691737E-4 0.0010136702988872985 0.0 0.5030375585412961 1.1752699117533896E-4 76-77 1.469087389691737E-4 0.001050397483629592 0.0 0.5065560228396078 1.1752699117533896E-4 78-79 1.469087389691737E-4 0.001072433794474968 0.0 0.5086127451851763 1.1752699117533896E-4 80-81 1.469087389691737E-4 0.001072433794474968 0.0 0.509376670627816 1.3221786507225633E-4 82-83 1.469087389691737E-4 0.0010871246683718855 0.0 0.5100891780118164 1.469087389691737E-4 84-85 1.469087389691737E-4 0.0011018155422688027 0.0 0.510258123061631 1.469087389691737E-4 86-87 1.469087389691737E-4 0.0011458881639595548 0.0 0.510338922868064 1.469087389691737E-4 88 1.469087389691737E-4 0.0012046516595472243 0.0 0.5103462683050125 1.469087389691737E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7520 0.0 41.736145 1 GTATCAA 13230 0.0 33.672417 1 TCAACGC 14775 0.0 29.260012 4 ATCAACG 14825 0.0 29.161755 3 CAACGCA 14995 0.0 28.720997 5 TATCAAC 15840 0.0 27.76056 2 AACGCAG 15605 0.0 27.65101 6 ACGCAGA 18380 0.0 23.4539 7 CGCAGAG 18880 0.0 22.81098 8 TACATGG 18800 0.0 22.536427 2 GTACATG 19510 0.0 22.45422 1 ACATGGG 19525 0.0 21.215052 3 GCAGAGT 22135 0.0 19.270744 9 GTGGTAT 4235 0.0 19.13456 1 CATGGGG 15385 0.0 18.956057 4 GAGTACT 12070 0.0 17.824839 12-13 TGGTATC 4420 0.0 16.844648 2 AGAGTAC 19775 0.0 16.838478 10-11 CAGAGTA 21770 0.0 16.608595 10-11 CTTATAC 8125 0.0 16.60566 1 >>END_MODULE