##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140283_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5745398 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.056243797209525 33.0 31.0 34.0 30.0 34.0 2 32.187843905678946 33.0 31.0 34.0 30.0 34.0 3 32.09471110617576 33.0 31.0 34.0 30.0 34.0 4 35.98047654836097 37.0 35.0 37.0 35.0 37.0 5 35.85194045738868 37.0 35.0 37.0 35.0 37.0 6 35.90347822726989 37.0 35.0 37.0 35.0 37.0 7 35.85796493123714 37.0 35.0 37.0 35.0 37.0 8 35.849461603878446 37.0 35.0 37.0 35.0 37.0 9 37.604314270308166 39.0 37.0 39.0 35.0 39.0 10-11 37.48687688825039 39.0 37.0 39.0 34.5 39.0 12-13 37.46262617489685 39.0 37.0 39.0 34.0 39.0 14-15 38.759538677738256 40.0 38.0 41.0 34.5 41.0 16-17 38.6101313607865 40.0 38.0 41.0 34.0 41.0 18-19 38.67385114138307 40.0 38.0 41.0 34.0 41.0 20-21 38.70018582736556 40.0 38.0 41.0 34.0 41.0 22-23 38.62845808319446 40.0 38.0 41.0 34.0 41.0 24-25 38.57620750948169 40.0 38.0 41.0 34.0 41.0 26-27 38.37305218768766 40.0 38.0 41.0 34.0 41.0 28-29 38.265216646862385 40.0 38.0 41.0 34.0 41.0 30-31 38.147699252865735 40.0 38.0 41.0 33.5 41.0 32-33 37.9725389922734 40.0 37.0 41.0 33.0 41.0 34-35 38.06285024222865 40.0 37.0 41.0 33.0 41.0 36-37 38.03910161523547 40.0 37.0 41.0 33.0 41.0 38-39 37.99419742273635 40.0 37.0 41.0 33.0 41.0 40-41 37.92593904415668 40.0 37.0 41.0 33.0 41.0 42-43 37.99497679312222 40.0 37.0 41.0 33.0 41.0 44-45 38.00221642245645 40.0 37.0 41.0 33.0 41.0 46-47 37.94126155086714 40.0 37.0 41.0 33.0 41.0 48-49 37.85636412988161 40.0 37.0 41.0 33.0 41.0 50-51 37.73720196210765 40.0 37.0 41.0 32.5 41.0 52-53 37.56521448094226 40.0 36.0 41.0 32.0 41.0 54-55 37.417597141442855 39.0 36.0 41.0 32.0 41.0 56-57 37.27921016916397 39.0 36.0 41.0 31.0 41.0 58-59 37.11050013389263 39.0 35.0 41.0 31.0 41.0 60-61 36.92627622972242 39.0 35.0 40.5 31.0 41.0 62-63 36.71421722038508 38.5 35.0 40.0 31.0 41.0 64-65 36.419155491304934 38.0 35.0 40.0 30.5 41.0 66-67 36.12794483012124 37.5 34.5 40.0 30.0 41.0 68-69 35.814128443921675 37.0 34.0 39.5 30.0 41.0 70-71 35.50518935473444 36.5 34.0 39.0 29.0 41.0 72-73 35.22307521562335 36.0 34.0 39.0 29.0 40.5 74-75 34.88967865847204 35.5 34.0 38.5 29.0 40.0 76-77 33.6125233155569 34.5 32.0 36.5 28.0 39.0 78-79 34.3113943795493 35.0 33.5 37.0 29.0 39.0 80-81 34.21746528677665 35.0 34.0 37.0 29.0 39.0 82-83 33.988940893513984 35.0 33.5 36.0 29.0 38.5 84-85 33.74702219546169 35.0 33.0 36.0 29.0 37.0 86-87 33.540476795839936 35.0 33.0 35.5 29.0 37.0 88-89 33.374088085707065 35.0 33.0 35.0 29.0 36.5 90-91 33.24705023095056 35.0 33.0 35.0 29.0 36.0 92-93 33.19189865322975 35.0 33.0 35.0 29.0 36.0 94-95 33.12169419690354 35.0 33.0 35.0 29.0 36.0 96-97 33.15932777280245 35.0 33.0 35.0 29.0 35.0 98-99 33.27731119040611 35.0 33.0 35.0 29.0 35.0 100 32.09077409087247 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 20.0 21 215.0 22 858.0 23 3015.0 24 8207.0 25 17387.0 26 31695.0 27 51100.0 28 72840.0 29 96710.0 30 123378.0 31 153187.0 32 189640.0 33 239387.0 34 316145.0 35 435070.0 36 663163.0 37 1118137.0 38 1419519.0 39 775760.0 40 29961.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.597535975749636 20.380172095997526 13.826022148509121 24.196269779743716 2 14.8613203123613 21.12168730521367 40.77355476504848 23.24343761737655 3 18.30277226175253 25.751764765469865 30.413701023483036 25.531761949294573 4 12.567588877219645 17.597632052644567 38.75111872145324 31.083660348682546 5 13.030481091127195 38.00897692379188 35.907503709925756 13.053038275155176 6 30.595304276570566 37.85226019154809 18.428366494366447 13.124069037514893 7 27.069125585381553 32.3605083581677 22.93653111586003 17.633834940590713 8 24.834658974017117 36.80954739776078 20.924364160672592 17.431429467549506 9 25.5426517014139 16.609763153048753 21.222968365289923 36.62461678024743 10-11 24.457548458783883 26.73847834388497 28.759478455626574 20.044494741704575 12-13 24.985849544278743 24.053425019467756 29.06178127259417 21.89894416365933 14-15 21.98570925808795 25.62195865282092 26.51349828158119 25.878833807509942 16-17 21.828739942824953 28.79452620589718 27.21507183606327 22.161662015214596 18-19 21.793766408865032 28.176882898088735 28.732348571528533 21.2970021215177 20-21 22.542783541042958 27.34952656130335 28.603164380700413 21.504525516953283 22-23 22.307752631792876 27.244484199581503 28.45186805963607 21.995895108989547 24-25 22.083527794267603 27.35859675771051 28.578553468334274 21.97932197968761 26-27 22.080914685476703 27.622750597612338 28.378575058759587 21.91775965815137 28-29 22.00425943042865 27.74853759119491 28.371066378521036 21.876136599855403 30-31 22.25899782684406 27.493316875401447 28.37267192888609 21.875013368868405 32-33 22.016092102798407 27.607010592007477 28.341468827144627 22.035428478049493 34-35 22.153830142061047 27.646798114947686 28.378199959986766 21.8211717830045 36-37 22.148612626702427 27.63368575968517 28.278708265166706 21.938993348445695 38-39 22.007850445975176 27.68843030279273 28.356537821474515 21.947181429757574 40-41 22.244150338196214 27.51813242332601 28.250989776801287 21.986727461676487 42-43 22.175668307090902 27.647543792647276 28.073971201333634 22.102816698928184 44-45 22.203762444301216 27.796384288311977 27.922785263790388 22.077068003596416 46-47 22.165047633979555 27.703521732394353 27.776246002669993 22.355184630956103 48-49 22.16519107124278 27.802446869980514 27.80511126328174 22.22725079549496 50-51 22.12002242346002 27.910435161199448 27.680594695960075 22.288947719380452 52-53 22.21226152913249 27.858317765028602 27.582148743995017 22.347271961843894 54-55 22.231115544235532 27.770508846062143 27.651116159183285 22.34725945051904 56-57 22.276025672580314 27.805311347992202 27.584022280549554 22.33464069887793 58-59 22.09809811470893 27.98944133483906 27.650316717481527 22.262143832970484 60-61 22.285817980550483 27.914788297532674 27.632762026814017 22.166631695102826 62-63 22.28713095534653 27.948381283141078 27.49635046151755 22.26813729999484 64-65 22.122057837827626 27.97330734584007 27.543676498590276 22.36095831774203 66-67 22.216031866463556 27.96817197359368 27.40623531161008 22.409560848332692 68-69 22.188474489747883 27.947421881292833 27.51256604693347 22.35153758202582 70-71 22.15167023268636 27.719500841261517 27.599710962304265 22.52911796374786 72-73 22.244429469679638 27.767469822430403 27.571474545270156 22.4166261626198 74-75 22.203204991618 27.93968823217724 27.44731361607191 22.409793160132846 76-77 22.255340086303114 27.835406765392186 27.41117113563846 22.498082012666238 78-79 22.244372934581964 27.821504741747276 27.444973516618187 22.48914880705257 80-81 22.20199717490409 27.844278279272057 27.47702707956414 22.47669746625971 82-83 22.2425143230909 27.879510629489236 27.558921591268913 22.31905345615095 84-85 22.431405264357974 27.919065177462105 27.41125968441737 22.238269873762547 86-87 22.22204607719145 27.887410444930605 27.539042546070736 22.351500931807212 88-89 22.28925952507218 27.853367581480303 27.529838692086013 22.32753420136151 90-91 22.322708238785605 27.911543921749924 27.54116120870019 22.224586630764282 92-93 22.403884951919338 27.865250756099698 27.54963234613633 22.18123194584463 94-95 22.10241589227761 28.020054324820094 27.623200931282632 22.254328851619665 96-97 22.09689250090667 28.18908652033984 27.73971221736143 21.974308761392063 98-99 23.26221434997046 30.110380224822546 27.86451909157152 18.762886333635475 100 29.648753680618846 41.55725854674816 28.793987772632995 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 533.0 1 565.0 2 999.5 3 1482.0 4 2076.5 5 3611.5 6 4962.5 7 5754.5 8 6165.5 9 5939.5 10 5271.5 11 4602.5 12 4941.5 13 6763.5 14 10865.5 15 16525.5 16 21514.5 17 24712.5 18 25903.0 19 25607.0 20 24455.5 21 23163.5 22 23085.5 23 25421.5 24 30302.0 25 37652.0 26 47648.0 27 59114.0 28 71079.0 29 85322.0 30 99735.0 31 113559.0 32 128093.0 33 142120.5 34 155534.0 35 169431.5 36 183471.0 37 195488.0 38 205365.5 39 213252.0 40 222084.5 41 230227.5 42 235473.5 43 241063.0 44 247128.0 45 251969.0 46 254592.0 47 255949.0 48 255484.5 49 251449.5 50 245198.0 51 237671.5 52 227510.0 53 216172.0 54 204062.0 55 189472.5 56 172690.5 57 154757.0 58 137139.5 59 117551.0 60 97135.0 61 79445.0 62 64371.0 63 50423.0 64 37830.5 65 28657.0 66 21823.0 67 16769.5 68 12872.0 69 9474.5 70 6920.0 71 5001.0 72 3615.5 73 2585.5 74 1788.0 75 1200.0 76 769.5 77 508.0 78 341.0 79 222.0 80 150.5 81 97.0 82 64.5 83 48.0 84 40.0 85 29.5 86 20.5 87 15.5 88 11.5 89 8.5 90 6.5 91 6.5 92 7.0 93 4.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.9588898802136943E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.001035611458074793 18-19 0.0038030437578040724 20-21 0.0 22-23 0.0015579577697703972 24-25 6.616198421183536E-4 26-27 0.013629234315712288 28-29 0.007146477070048984 30-31 8.46869716340552E-4 32-33 0.007259371112536714 34-35 0.005089297839509564 36-37 0.0022889851735625215 38-39 0.0017639138504475442 40-41 0.0038384965606801133 42-43 0.008521468883434382 44-45 0.010013498048651662 46-47 0.009304204155203772 48-49 0.007879978915427846 50-51 0.0340883499863694 52-53 0.012878822915801894 54-55 8.70208330775082E-5 56-57 0.009066479865917704 58-59 0.0067458855530391545 60-61 1.5979365844884501E-4 62-63 0.005543295459869368 64-65 0.0024809340726993315 66-67 0.024100069521417865 68-69 0.032961602034249526 70-71 0.0157562774947307 72-73 0.011779983353672295 74-75 0.01731213298495016 76-77 0.002261894683767908 78-79 0.003101991823416391 80-81 0.001972006522270715 82-83 0.025384709151438985 84-85 0.001065371545431438 86-87 0.009675297486043032 88-89 9.774191152902797E-4 90-91 0.002811358907893702 92-93 0.001283286160227655 94-95 6.803154748841385E-4 96-97 0.0028914092988241687 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 125.0 20-21 396.0 22-23 935.0 24-25 2004.0 26-27 3276.0 28-29 7846.0 30-31 16387.0 32-33 19973.0 34-35 27364.0 36-37 42076.0 38-39 50481.0 40-41 51711.0 42-43 55014.0 44-45 61981.0 46-47 61174.0 48-49 57977.0 50-51 52513.0 52-53 49875.0 54-55 52835.0 56-57 55068.0 58-59 55961.0 60-61 54866.0 62-63 54568.0 64-65 56012.0 66-67 58762.0 68-69 59376.0 70-71 58476.0 72-73 54930.0 74-75 56170.0 76-77 55592.0 78-79 59232.0 80-81 60843.0 82-83 59378.0 84-85 58674.0 86-87 62352.0 88-89 67307.0 90-91 72247.0 92-93 80433.0 94-95 98081.0 96-97 217420.0 98-99 1205674.0 100-101 2470033.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.6955936023331 #Duplication Level Percentage of deduplicated Percentage of total 1 89.90386863185323 77.04365389552837 2 7.023925265096374 12.038388900217173 3 1.7898578450478895 4.6014879148551495 4 0.6304413297761222 2.161041759464361 5 0.27422403487525 1.174989572433072 6 0.14112707008252298 0.7256380826447922 7 0.07658641903149926 0.4594183048546944 8 0.04648276428056735 0.3186694461840436 9 0.03014642396388193 0.23250741269152153 >10 0.08098984721891689 0.9975026719218233 >50 0.0014970189735271041 0.08574729670617917 >100 8.533498002320179E-4 0.16095474249888128 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.740523458949232E-5 0.0 1.740523458949232E-5 0.0 3 0.0 1.740523458949232E-5 0.0 1.740523458949232E-5 0.0 4 0.0 3.481046917898464E-5 0.0 3.481046917898464E-5 0.0 5 0.0 3.481046917898464E-5 0.0 3.481046917898464E-5 0.0 6 0.0 5.221570376847696E-5 0.0 3.481046917898464E-5 0.0 7 0.0 5.221570376847696E-5 0.0 3.481046917898464E-5 0.0 8 0.0 5.221570376847696E-5 0.0 3.481046917898464E-5 0.0 9 0.0 1.0443140753695392E-4 0.0 5.221570376847696E-5 0.0 10-11 0.0 1.0443140753695392E-4 0.0 8.70261729474616E-5 0.0 12-13 0.0 1.0443140753695392E-4 0.0 8.70261729474616E-5 0.0 14-15 0.0 1.9145758048441552E-4 0.0 8.70261729474616E-5 0.0 16-17 0.0 2.0886281507390784E-4 0.0 8.70261729474616E-5 0.0 18-19 0.0 2.4367328425289246E-4 0.0 1.0443140753695392E-4 0.0 20-21 0.0 2.784837534318771E-4 0.0 2.0016019777916168E-4 0.0 22-23 0.0 2.9588898802136943E-4 0.0 2.3497066695814633E-4 0.0 24-25 0.0 3.3940207449510023E-4 0.0 3.481046917898464E-4 0.0 26-27 0.0 3.655099263793387E-4 0.0 4.87346568505785E-4 0.0 28-29 0.0 3.655099263793387E-4 0.0 0.0012531768904434472 0.0 30-31 0.0 4.35130864737308E-4 0.0 0.004272985091720365 0.0 32-33 0.0 4.35130864737308E-4 0.0 0.009738228752820953 0.0 34-35 0.0 5.221570376847696E-4 0.0 0.01625648910658583 0.0 36-37 0.0 6.091832106322312E-4 0.0 0.02742194709574515 0.0 38-39 0.0 6.613989144007081E-4 0.0 0.05537475384646982 0.0 40-41 0.0 7.832355565271544E-4 0.0 0.08565115941489171 0.0 42-43 0.0 7.919381738219005E-4 0.0 0.10590214985976602 0.0 44-45 0.0 8.70261729474616E-4 0.0 0.13002580500080238 0.0 46-47 0.0 9.311800505378391E-4 0.0 0.15533301609392422 0.0 48-49 0.0 9.398826678325853E-4 0.0 0.17729842214586353 0.0 50-51 0.0 9.920983716010623E-4 0.0 0.19924642296321332 0.0 52-53 0.0 9.920983716010623E-4 0.0 0.2508964566075318 0.0 54-55 0.0 0.0010008009888958086 0.0 0.3112839180157754 0.0 56-57 0.0 0.001026908840780047 0.0 0.3702354475703859 0.0 58-59 0.0 0.001026908840780047 0.0 0.4102326766570392 0.0 60-61 0.0 0.0011052323964327623 0.0 0.43963882049598657 0.0 62-63 0.0 0.001148745482906493 0.0 0.4640931750942232 0.0 64-65 0.0 0.0013227978288014163 0.0 0.4721692039437477 0.0 66-67 0.0 0.0013315004460961624 0.0 0.47988842548418753 0.0 68-69 0.0 0.0013837161498646395 0.0 0.4877642941359328 0.0 70-71 0.0 0.0014272292363383702 0.0 0.49416942046486595 0.0 72-73 0.0 0.0014446344709278627 0.0 0.4992604515822925 0.0 74-75 0.0 0.001462039705517355 0.0 0.5031940345995178 0.0 76-77 0.0 0.0015055527919910858 0.0 0.5069274574189638 0.0 78-79 0.0 0.001514255409285832 0.0 0.5092945693231348 0.0 80-81 0.0 0.001514255409285832 0.0 0.5099994813240092 0.0 82-83 0.0 0.001522958026580578 0.0 0.5106086645346415 0.0 84-85 0.0 0.0015316606438753242 0.0 0.5109132561399576 0.0 86-87 0.0 0.0015490658784648166 0.0 0.511035092782084 0.0 88 0.0 0.0016883077551807552 0.0 0.5110524980166735 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5835 0.0 42.89777 1 GTATCAA 10085 0.0 33.66657 1 ATCAACG 11635 0.0 28.47154 3 TCAACGC 11640 0.0 28.423574 4 CAACGCA 11785 0.0 28.07386 5 AACGCAG 12375 0.0 26.802141 6 TATCAAC 12585 0.0 26.683344 2 ACGCAGA 14350 0.0 23.05578 7 CGCAGAG 14830 0.0 22.19813 8 GTACATG 15495 0.0 20.73915 1 TACATGG 15270 0.0 20.584892 2 ACATGGG 15520 0.0 19.880709 3 GCAGAGT 18015 0.0 18.021357 9 CATGGGG 12020 0.0 17.800182 4 GAGTACT 9840 0.0 17.337793 12-13 AGAGTAC 16035 0.0 16.498901 10-11 CTAACGC 410 1.6370905E-11 16.119036 3 CAGAGTA 17630 0.0 16.107393 10-11 GAGTACA 11485 0.0 16.076056 1 GTACTAG 1415 0.0 16.05496 1 >>END_MODULE