##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140282_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8053911 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.070324715532614 33.0 31.0 34.0 30.0 34.0 2 32.2046421918494 33.0 31.0 34.0 30.0 34.0 3 32.11424424729799 33.0 31.0 34.0 30.0 34.0 4 35.99119160864827 37.0 35.0 37.0 35.0 37.0 5 35.86208116777054 37.0 35.0 37.0 35.0 37.0 6 35.9146727596071 37.0 35.0 37.0 35.0 37.0 7 35.86579638141023 37.0 35.0 37.0 35.0 37.0 8 35.8557092324462 37.0 35.0 37.0 35.0 37.0 9 37.61732008213153 39.0 37.0 39.0 35.0 39.0 10-11 37.495963824283635 39.0 37.0 39.0 34.5 39.0 12-13 37.47548700252585 39.0 37.0 39.0 34.5 39.0 14-15 38.787255222959374 40.0 38.0 41.0 35.0 41.0 16-17 38.63538931582433 40.0 38.0 41.0 34.0 41.0 18-19 38.698650941139036 40.0 38.0 41.0 34.0 41.0 20-21 38.72634962486541 40.0 38.0 41.0 34.0 41.0 22-23 38.658193573670204 40.0 38.0 41.0 34.0 41.0 24-25 38.608261253019634 40.0 38.0 41.0 34.0 41.0 26-27 38.41338864320622 40.0 38.0 41.0 34.0 41.0 28-29 38.308514326853995 40.0 38.0 41.0 34.0 41.0 30-31 38.19038248478448 40.0 38.0 41.0 33.5 41.0 32-33 38.01855134342787 40.0 37.0 41.0 33.0 41.0 34-35 38.10549227256529 40.0 38.0 41.0 33.0 41.0 36-37 38.082920543448715 40.0 37.5 41.0 33.0 41.0 38-39 38.03972880681112 40.0 37.0 41.0 33.0 41.0 40-41 37.97284012451172 40.0 37.0 41.0 33.0 41.0 42-43 38.03761888187568 40.0 37.0 41.0 33.0 41.0 44-45 38.04669516791513 40.0 37.0 41.0 33.0 41.0 46-47 37.98823270174684 40.0 37.0 41.0 33.0 41.0 48-49 37.90370082862984 40.0 37.0 41.0 33.0 41.0 50-51 37.78639567355261 40.0 37.0 41.0 33.0 41.0 52-53 37.61627520290598 40.0 36.5 41.0 32.0 41.0 54-55 37.471268593172525 39.0 36.0 41.0 32.0 41.0 56-57 37.3367390135278 39.0 36.0 41.0 31.5 41.0 58-59 37.168589968988876 39.0 35.5 41.0 31.0 41.0 60-61 36.9856403884973 39.0 35.0 40.5 31.0 41.0 62-63 36.77570440765676 38.5 35.0 40.0 31.0 41.0 64-65 36.485166893561185 38.0 35.0 40.0 31.0 41.0 66-67 36.198426534570814 37.5 35.0 40.0 30.0 41.0 68-69 35.890169891352144 37.0 34.0 40.0 30.0 41.0 70-71 35.58789566162393 36.5 34.0 39.0 30.0 41.0 72-73 35.303069687856386 36.0 34.0 39.0 29.5 40.5 74-75 34.97203295539076 35.5 34.0 38.5 29.0 40.0 76-77 33.688149365127906 34.5 32.0 36.5 28.0 39.0 78-79 34.371672737449416 35.0 33.5 37.0 29.0 39.0 80-81 34.27812988579565 35.0 34.0 37.0 29.0 39.0 82-83 34.04484213194334 35.0 34.0 36.0 29.0 38.5 84-85 33.802543739061704 35.0 33.0 36.0 29.0 37.0 86-87 33.59743289799021 35.0 33.0 35.5 29.0 37.0 88-89 33.42858173216686 35.0 33.0 35.0 29.0 36.5 90-91 33.29917725736556 35.0 33.0 35.0 29.0 36.0 92-93 33.24565340506085 35.0 33.0 35.0 29.0 36.0 94-95 33.17314523376821 35.0 33.0 35.0 29.0 36.0 96-97 33.20537427657355 35.0 33.0 35.0 29.0 35.0 98-99 33.31940393289494 35.0 33.0 35.0 29.5 35.0 100 32.143432235172874 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 5.0 20 33.0 21 264.0 22 1207.0 23 4220.0 24 11016.0 25 24054.0 26 44187.0 27 69575.0 28 99648.0 29 132917.0 30 169229.0 31 210938.0 32 260164.0 33 328610.0 34 435263.0 35 599939.0 36 920816.0 37 1562517.0 38 2010751.0 39 1121171.0 40 47385.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.421006514723096 20.45662039225415 13.777827939742568 24.34454515328019 2 14.957019018461962 21.18174635900496 40.74246661032137 23.118768012211707 3 18.290067464335536 25.68158100097034 30.49919386730752 25.52915766738661 4 12.553789084582634 17.63697165265422 38.707964366628836 31.101274896134314 5 13.052652307680082 37.93446438630871 35.93130095428172 13.08158235172949 6 30.609923551427375 37.85727207564126 18.43062333318558 13.102181039745783 7 27.032369739372587 32.37787206737199 22.943039723185418 17.64671847007001 8 24.710069430864085 36.90897503088872 20.99381281963508 17.387142718612115 9 25.437989071396494 16.611544378873816 21.2693683851237 36.68109816460599 10-11 24.441491841665496 26.716430067330023 28.867428507715072 19.974649583289413 12-13 24.87154377544028 24.068666763265696 29.110422253238212 21.94936720805581 14-15 21.910659305770825 25.75364316789694 26.469109231527394 25.86658829480485 16-17 21.848461221508078 28.894914034480074 27.19016811795169 22.066456626060155 18-19 21.741567913507307 28.298221834706595 28.681889623772378 21.278320628013724 20-21 22.477130290727228 27.403085750017446 28.63218439900537 21.487599560249954 22-23 22.254646965944293 27.38402686755658 28.394410167351005 21.966915999148124 24-25 22.076083095488272 27.421902363049682 28.54926932506651 21.952745216395535 26-27 22.085367877397584 27.697171247262986 28.3509859471 21.866474928239434 28-29 21.967010801220162 27.819869796524976 28.35643398663426 21.8566854156206 30-31 22.231418156959105 27.61861090331536 28.317433456329738 21.832537483395797 32-33 21.982916396829015 27.70569932711079 28.30022350143254 22.01116077462766 34-35 22.140107240809648 27.724093745990245 28.33179041428755 21.804008598912556 36-37 22.112321483811744 27.678983481742048 28.286276081526214 21.92241895291999 38-39 22.01434969907787 27.740467415287767 28.337679958134338 21.907502927500026 40-41 22.21050264490182 27.610657401326783 28.235204175800483 21.94363577797091 42-43 22.136223180004848 27.662341023931464 28.109809732525097 22.091626063538595 44-45 22.17185330472756 27.84513373602823 27.922541962815234 22.060470996428972 46-47 22.17257553712664 27.73548462424787 27.771929601331642 22.320010237293854 48-49 22.177675312553262 27.772928477046943 27.81288271564574 22.236513494754057 50-51 22.08960609601504 27.929514017643864 27.72507432455739 22.255805561783703 52-53 22.234137466102922 27.844911802149923 27.677110172805484 22.243840558941667 54-55 22.232761272928787 27.76771923090282 27.69332350908928 22.306195987079114 56-57 22.277369325681143 27.854462707716536 27.623370744423458 22.24479722217886 58-59 22.159418580840985 27.969667746951654 27.715472590366918 22.155441081840443 60-61 22.283165317688766 27.985353224478605 27.617864230418537 22.113617227414093 62-63 22.192840371165605 28.055764529038346 27.551013745612007 22.200381354184042 64-65 22.1423402095026 28.047151040875455 27.551712076945318 22.258796672676628 66-67 22.168607273658182 28.061047002411023 27.391675586498383 22.378670137432415 68-69 22.19867698397859 28.006569434215073 27.505760280731916 22.28899330107442 70-71 22.1411539615852 27.81684486523307 27.559150677973683 22.48285049520805 72-73 22.231922707147174 27.796793019683815 27.577455125900457 22.393829147268562 74-75 22.148850352114856 27.963293062761952 27.503914965283492 22.3839416198397 76-77 22.23247242587312 27.927509592107334 27.401527688472477 22.43849029354707 78-79 22.253542701513037 27.835448960454368 27.412884405287674 22.498123932744925 80-81 22.167333865160163 27.907175556788076 27.482618358973447 22.442872219078307 82-83 22.27978055946312 27.867061665077554 27.555189866698242 22.297967908761084 84-85 22.363363077368998 27.870246992815883 27.487729032525205 22.27866089728991 86-87 22.18660262872264 27.92497125134036 27.552957460052347 22.335468659884654 88-89 22.31318069966873 27.874603671872883 27.531694936571704 22.280520691886682 90-91 22.341876372032658 27.887688090163554 27.524746436505325 22.245689101298463 92-93 22.342232928051892 27.85747144184129 27.600176216508327 22.20011941359849 94-95 22.132517622832538 27.95662873465715 27.666194216145616 22.244659426364695 96-97 22.0701745271042 28.109847895508132 27.79712126134224 22.022856316045427 98-99 23.236698319367942 30.02634384919588 27.987742604928563 18.749215226507616 100 22.221062678415745 31.080049831395083 21.596713562966492 25.102173927222683 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 959.0 1 912.5 2 1409.5 3 2063.5 4 2744.0 5 4590.5 6 6202.5 7 7095.5 8 7565.0 9 7268.0 10 6558.0 11 5899.5 12 6463.0 13 8920.0 14 14409.5 15 21887.0 16 28525.5 17 33053.5 18 34915.5 19 34776.5 20 33590.5 21 32257.5 22 32216.0 23 34862.5 24 40960.5 25 50916.5 26 64374.5 27 79923.0 28 97055.5 29 117035.0 30 137453.0 31 157299.0 32 178945.5 33 199377.0 34 219199.0 35 239177.5 36 258916.5 37 277823.5 38 292132.0 39 302742.5 40 314136.0 41 324271.0 42 331136.0 43 338164.5 44 343663.5 45 351202.0 46 358718.5 47 359990.0 48 357812.0 49 352547.5 50 344433.5 51 333167.5 52 318581.0 53 301153.5 54 281459.0 55 258844.0 56 236461.5 57 213523.5 58 188450.5 59 164349.0 60 139154.0 61 113734.0 62 91028.0 63 71204.5 64 53796.0 65 40491.0 66 30656.5 67 23295.0 68 17686.5 69 13085.0 70 9765.5 71 7194.5 72 5248.5 73 3847.0 74 2763.5 75 1841.5 76 1153.0 77 718.0 78 485.5 79 348.0 80 240.0 81 158.5 82 113.0 83 74.0 84 48.5 85 37.0 86 28.0 87 21.0 88 14.0 89 8.5 90 7.0 91 7.0 92 6.0 93 3.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.228245258732062E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 8.877674461513171E-4 18-19 0.004084971885087879 20-21 0.0 22-23 0.001316289291080116 24-25 5.340617770371569E-4 26-27 0.013536080082903678 28-29 0.00734744037741725 30-31 7.284472083101258E-4 32-33 0.006904536911273517 34-35 0.0045984725302662816 36-37 0.0019522662095088966 38-39 0.0014592873424334493 40-41 0.0035505070827818322 42-43 0.008713397196725854 44-45 0.009837237719294128 46-47 0.008906074338231214 48-49 0.00798487752177662 50-51 0.033661085535660475 52-53 0.013060411303014323 54-55 4.805036007223753E-5 56-57 0.008553347917728032 58-59 0.00653754271586219 60-61 1.3479828323744326E-4 62-63 0.005280561771416104 64-65 0.0023733474389040854 66-67 0.023786275355860902 68-69 0.032105632219673094 70-71 0.015128240495886527 72-73 0.010646485288947826 74-75 0.016957848572521094 76-77 0.0021067340382982316 78-79 0.002722257222672228 80-81 0.001795084575450021 82-83 0.02516358576034975 84-85 9.440709199325171E-4 86-87 0.009698212469850661 88-89 9.904636283397943E-4 90-91 0.0033796029062152376 92-93 0.0012660089263367836 94-95 8.501685549603673E-4 96-97 0.0031469996105355216 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 147.0 20-21 579.0 22-23 1219.0 24-25 2324.0 26-27 4126.0 28-29 9813.0 30-31 20560.0 32-33 26208.0 34-35 36651.0 36-37 55846.0 38-39 64344.0 40-41 67821.0 42-43 73814.0 44-45 84188.0 46-47 84325.0 48-49 79473.0 50-51 71212.0 52-53 68897.0 54-55 74816.0 56-57 79520.0 58-59 80524.0 60-61 78823.0 62-63 79415.0 64-65 83021.0 66-67 87589.0 68-69 87254.0 70-71 84482.0 72-73 80821.0 74-75 81774.0 76-77 82462.0 78-79 88209.0 80-81 88189.0 82-83 86256.0 84-85 86860.0 86-87 92149.0 88-89 98923.0 90-91 105638.0 92-93 115238.0 94-95 138585.0 96-97 302549.0 98-99 519757.0 100-101 4599510.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.7363228664411 #Duplication Level Percentage of deduplicated Percentage of total 1 89.27353859609929 75.6471138990876 2 7.38768402555001 12.5201035764851 3 1.8688387752210038 4.750755775273541 4 0.7084265422321628 2.401178408389641 5 0.31757488960841845 1.345506419006667 6 0.16324299047214405 0.8299566447798581 7 0.0866126744241655 0.5137467681032424 8 0.05362517144882422 0.3635199873324663 9 0.039541693218377985 0.30155559149144184 >10 0.09941812661484781 1.204053437469136 >50 0.0012289280100076635 0.06614155582525977 >100 2.447222129018154E-4 0.04282490607211399 >500 2.2864887706391623E-5 0.013543030683886109 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.966531167280095E-5 0.0 0.0 0.0 3 0.0 6.208163959100119E-5 0.0 2.4832655836400475E-5 0.0 4 0.0 8.691429542740167E-5 0.0 3.7248983754600716E-5 0.0 5 0.0 8.691429542740167E-5 0.0 3.7248983754600716E-5 0.0 6 0.0 8.691429542740167E-5 0.0 4.966531167280095E-5 0.0 7 0.0 8.691429542740167E-5 0.0 4.966531167280095E-5 0.0 8 0.0 1.1174695126380214E-4 0.0 4.966531167280095E-5 0.0 9 0.0 2.855755421186055E-4 0.0 7.449796750920143E-5 0.0 10-11 1.2416327918200238E-5 2.855755421186055E-4 0.0 1.0553878730470203E-4 0.0 12-13 1.2416327918200238E-5 2.9799187003680573E-4 0.0 1.365796071002026E-4 0.0 14-15 1.2416327918200238E-5 4.221551492188081E-4 0.0 1.365796071002026E-4 0.0 16-17 1.2416327918200238E-5 4.5319596901430867E-4 0.0 1.365796071002026E-4 0.0 18-19 1.2416327918200238E-5 4.71820460891609E-4 0.0 1.614122629366031E-4 0.0 20-21 1.2416327918200238E-5 4.842367888098093E-4 0.0 2.359102304458045E-4 0.0 22-23 1.2416327918200238E-5 4.966531167280095E-4 0.0 2.545347223231049E-4 0.0 24-25 1.2416327918200238E-5 5.276939365235101E-4 0.0 3.10408197955006E-4 0.0 26-27 1.2416327918200238E-5 5.463184284008104E-4 0.0 4.1594698525970796E-4 0.0 28-29 1.2416327918200238E-5 5.463184284008104E-4 0.0 9.746817415787187E-4 0.0 30-31 1.2416327918200238E-5 6.580653796646127E-4 0.0 0.003395865685627765 0.0 32-33 1.2416327918200238E-5 6.704817075828129E-4 0.0 0.00779745393262975 0.0 34-35 1.2416327918200238E-5 7.387715111329143E-4 0.0 0.013695209693774864 0.0 36-37 1.2416327918200238E-5 8.070613146830155E-4 0.0 0.023758643471476156 0.0 38-39 1.2416327918200238E-5 8.31893970519416E-4 0.0 0.04901345445709544 0.0 40-41 1.2416327918200238E-5 8.815592821922169E-4 0.0 0.07662115958321367 0.0 42-43 1.2416327918200238E-5 9.746817415787188E-4 0.0 0.09446963096562652 0.0 44-45 1.2416327918200238E-5 0.0011174695126380213 0.0 0.11637203341333174 0.0 46-47 1.2416327918200238E-5 0.0012168001359836233 0.0 0.13972093806350727 0.0 48-49 1.2416327918200238E-5 0.0012230082999427235 0.0 0.1613936384447258 0.0 50-51 1.2416327918200238E-5 0.0013906287268384268 0.0 0.1825262285615026 0.0 52-53 1.2416327918200238E-5 0.0013906287268384268 0.0 0.23171971977341194 0.0 54-55 1.2416327918200238E-5 0.001403045054756627 0.0 0.290008171185403 0.0 56-57 1.2416327918200238E-5 0.0014154613826748272 0.0 0.3482159164659257 0.0 58-59 1.2416327918200238E-5 0.0014154613826748272 0.0 0.3873459739001337 0.0 60-61 1.2416327918200238E-5 0.0014837511862249284 0.0 0.4167602547383501 0.0 62-63 1.2416327918200238E-5 0.0015272083339386293 0.0 0.4408168900798631 0.0 64-65 1.2416327918200238E-5 0.0016389552852024314 0.0 0.4486391766683292 0.0 66-67 1.2416327918200238E-5 0.001657579777079732 0.0 0.45638696528928613 0.0 68-69 1.2416327918200238E-5 0.0016699961049979322 0.0 0.46383055387624716 0.0 70-71 1.2416327918200238E-5 0.0016824124329161323 0.0 0.47064711790333913 0.0 72-73 1.2416327918200238E-5 0.0016886205968752325 0.0 0.47630275527007937 0.0 74-75 1.2416327918200238E-5 0.0017010369247934328 0.0 0.48026356387598523 0.0 76-77 1.2416327918200238E-5 0.0017507022364662336 0.0 0.48447890720421416 0.0 78-79 1.2416327918200238E-5 0.0017755348923026342 0.0 0.4872291238380956 0.0 80-81 1.2416327918200238E-5 0.0017755348923026342 0.0 0.4881293076121651 0.0 82-83 1.2416327918200238E-5 0.0017755348923026342 0.0 0.48861354440097493 0.0 84-85 1.2416327918200238E-5 0.0018065757120981347 0.0 0.4887997893197479 0.0 86-87 1.2416327918200238E-5 0.0018376165318936353 0.0 0.4889115362710117 6.208163959100119E-6 88 1.2416327918200238E-5 0.0018996981714846364 0.0 0.48891774443497077 1.2416327918200238E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7750 0.0 41.975914 1 GTATCAA 13745 0.0 33.13486 1 TCAACGC 15525 0.0 28.641802 4 ATCAACG 15545 0.0 28.551636 3 CAACGCA 15685 0.0 28.243948 5 AACGCAG 16340 0.0 27.137133 6 TATCAAC 16885 0.0 26.580286 2 ACGCAGA 19080 0.0 23.109762 7 CGCAGAG 19400 0.0 22.707209 8 TACATGG 20365 0.0 21.061443 2 GTACATG 20885 0.0 20.953745 1 ACATGGG 20835 0.0 19.850399 3 CATGGGG 15720 0.0 18.400732 4 GCAGAGT 23920 0.0 18.295109 9 AGAGTAC 20825 0.0 16.805428 10-11 GAGTACT 13095 0.0 16.726046 12-13 CAGAGTA 22790 0.0 16.456564 10-11 ATGGGGG 10330 0.0 15.1242285 5 ATTCGCG 250 0.0042224857 14.738393 90-91 GTACTTT 15140 0.0 14.617867 14-15 >>END_MODULE