##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140281_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7509857 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06666385258734 33.0 31.0 34.0 30.0 34.0 2 32.201909437157056 33.0 31.0 34.0 30.0 34.0 3 32.108768382673595 33.0 31.0 34.0 30.0 34.0 4 35.986782171751074 37.0 35.0 37.0 35.0 37.0 5 35.859761643930106 37.0 35.0 37.0 35.0 37.0 6 35.9140803879488 37.0 35.0 37.0 35.0 37.0 7 35.86823916886833 37.0 35.0 37.0 35.0 37.0 8 35.8629317442396 37.0 35.0 37.0 35.0 37.0 9 37.62194166946188 39.0 37.0 39.0 35.0 39.0 10-11 37.503579761904916 39.0 37.0 39.0 35.0 39.0 12-13 37.47878887707183 39.0 37.0 39.0 34.5 39.0 14-15 38.78403410344565 40.0 38.0 41.0 35.0 41.0 16-17 38.63275345988612 40.0 38.0 41.0 34.0 41.0 18-19 38.70031959330251 40.0 38.0 41.0 34.0 41.0 20-21 38.72667849583931 40.0 38.0 41.0 34.0 41.0 22-23 38.65483099187094 40.0 38.0 41.0 34.0 41.0 24-25 38.59932818757815 40.0 38.0 41.0 34.0 41.0 26-27 38.400664481054285 40.0 38.0 41.0 34.0 41.0 28-29 38.293525920210676 40.0 38.0 41.0 34.0 41.0 30-31 38.17589747587927 40.0 38.0 41.0 33.5 41.0 32-33 38.00025298834777 40.0 37.0 41.0 33.0 41.0 34-35 38.09101839297776 40.0 38.0 41.0 33.0 41.0 36-37 38.06756215779112 40.0 37.5 41.0 33.0 41.0 38-39 38.020562815411765 40.0 37.0 41.0 33.0 41.0 40-41 37.95315908292794 40.0 37.0 41.0 33.0 41.0 42-43 38.01725831264031 40.0 37.0 41.0 33.0 41.0 44-45 38.022998148990084 40.0 37.0 41.0 33.0 41.0 46-47 37.95990974198488 40.0 37.0 41.0 33.0 41.0 48-49 37.86659620165294 40.0 37.0 41.0 33.0 41.0 50-51 37.74972993085764 40.0 37.0 41.0 33.0 41.0 52-53 37.57455773972616 40.0 36.0 41.0 32.0 41.0 54-55 37.42382933679986 39.0 36.0 41.0 32.0 41.0 56-57 37.28170620226449 39.0 36.0 41.0 31.0 41.0 58-59 37.10857544155425 39.0 35.0 41.0 31.0 41.0 60-61 36.92106145261326 39.0 35.0 40.0 31.0 41.0 62-63 36.71080557934378 38.0 35.0 40.0 31.0 41.0 64-65 36.408874080712806 38.0 35.0 40.0 30.5 41.0 66-67 36.11607416668798 37.0 34.5 40.0 30.0 41.0 68-69 35.798574701356245 37.0 34.0 39.5 30.0 41.0 70-71 35.49193994041531 36.0 34.0 39.0 30.0 41.0 72-73 35.20297804248204 36.0 34.0 39.0 29.0 40.5 74-75 34.875216296077504 35.5 34.0 38.5 29.0 40.0 76-77 33.59959018356451 34.5 32.0 36.5 28.0 39.0 78-79 34.298449457036725 35.0 33.5 37.0 29.0 39.0 80-81 34.210544510079814 35.0 34.0 36.5 29.0 39.0 82-83 33.98030519716836 35.0 33.5 36.0 29.0 38.5 84-85 33.74515815010324 35.0 33.0 36.0 29.0 37.0 86-87 33.54693369381616 35.0 33.0 35.5 29.0 37.0 88-89 33.37967586349451 35.0 33.0 35.0 29.0 36.5 90-91 33.25208622689585 35.0 33.0 35.0 29.0 36.0 92-93 33.19866085255413 35.0 33.0 35.0 29.0 36.0 94-95 33.13069972529364 35.0 33.0 35.0 29.0 36.0 96-97 33.166257605494124 35.0 33.0 35.0 29.0 35.0 98-99 33.28079257445962 35.0 33.0 35.0 29.0 35.0 100 32.05700907200907 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 34.0 21 244.0 22 1197.0 23 4021.0 24 10700.0 25 22896.0 26 41195.0 27 65304.0 28 94038.0 29 124192.0 30 159041.0 31 196438.0 32 243487.0 33 308073.0 34 408721.0 35 565150.0 36 871622.0 37 1475227.0 38 1854073.0 39 1022235.0 40 41965.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.802487051351314 20.2258445134175 13.642683209547132 24.328985225684058 2 15.121486334560034 21.080481292786267 40.367785964499724 23.430246408153977 3 18.453128147958665 25.570708885837185 30.392311300912787 25.583851665291355 4 12.782254042919858 17.368945906693032 38.41177002438262 31.437030026004493 5 13.11967724551879 37.94672788043767 35.823558291456145 13.110036582587393 6 30.95146818374837 37.54793200456413 18.23874941959614 13.261850392091354 7 27.1367883569554 32.36525009730545 22.855614960444655 17.6423465852945 8 25.013072818829972 36.62847375123122 20.830955902356063 17.52749752758275 9 25.595760345370095 16.502897458633367 21.104636213445875 36.79670598255066 10-11 24.60586133664063 26.640866796797862 28.680066744280218 20.07320512228129 12-13 24.98544246581526 23.935049628774554 29.038216040598375 22.041291864811807 14-15 22.00336171514318 25.58670557908093 26.430902745551617 25.979029960224274 16-17 21.916392441197573 28.775341512659313 27.126080464993187 22.182185581149934 18-19 21.851243417809837 28.144438754662637 28.628554775520577 21.375763052006953 20-21 22.661549378879794 27.303575154765706 28.513689918886243 21.521185547468253 22-23 22.391664230080014 27.225554721052838 28.316714935609188 22.06606611325796 24-25 22.12790129320958 27.243642661417095 28.504231121626354 22.12422492374697 26-27 22.163741614555203 27.501406986248117 28.2920113166606 22.042840082536085 28-29 22.08318442220705 27.655023150123753 28.28971126354869 21.972081164120507 30-31 22.289595364914174 27.441053044913748 28.263599136664514 22.00575245350757 32-33 22.086991532401644 27.54887675856914 28.242563653316743 22.12156805571247 34-35 22.224900310479747 27.573213582011974 28.247695262712057 21.95419084479622 36-37 22.213221907819346 27.544347326187 28.160503985172998 22.081926780820655 38-39 22.105383980520095 27.624950991501745 28.219935775465068 22.049729252513092 40-41 22.3152616355906 27.525001939465337 28.119006966284882 22.04072945865918 42-43 22.192258918416798 27.59148014348392 27.98839153684313 22.22786940125615 44-45 22.30711139169276 27.73001124037464 27.825148483529283 22.137728884403316 46-47 22.281314395455656 27.661869989163616 27.654712283599764 22.40210333178096 48-49 22.265800875967937 27.770988975360396 27.644465683618165 22.31874446505351 50-51 22.18989769890398 27.841819166165315 27.63435474692852 22.333928388002185 52-53 22.291654807069968 27.76072228725564 27.529546929182295 22.418075976492094 54-55 22.331147450509224 27.686663665191162 27.571739912850962 22.41044897144865 56-57 22.358624634696326 27.765435979703717 27.50865597707103 22.36728340852893 58-59 22.259766744431598 27.848025841559416 27.546260906254204 22.345946507754782 60-61 22.362996298095073 27.763630956135888 27.566090761393614 22.30728198437543 62-63 22.2877131886011 27.838988650178187 27.484343843079028 22.38895431814169 64-65 22.23002355852688 27.857614660914226 27.507857784786754 22.40450399577214 66-67 22.365148772999227 27.903913949242366 27.27930815084646 22.451629126911953 68-69 22.315918480491977 27.87406165953115 27.38133757901093 22.428682280965944 70-71 22.233853611769547 27.683306539403546 27.517318570266063 22.565521278560848 72-73 22.336623623362044 27.67344282340412 27.426950466507904 22.562983086725932 74-75 22.221803266175787 27.85481991035617 27.398992957293366 22.524383866174674 76-77 22.360309312909248 27.763856907149204 27.27563366010578 22.600200119835772 78-79 22.342888819202667 27.765259715500108 27.243009159026737 22.648842306270495 80-81 22.284293223328262 27.749883849996998 27.339811016398404 22.626011910276333 82-83 22.363879082601716 27.794733142536682 27.437946989784134 22.403440785077464 84-85 22.499967848117365 27.759792570342963 27.344854662773194 22.39538491876648 86-87 22.301605183809343 27.82326158733987 27.382249723568552 22.492883505282233 88-89 22.405957303826604 27.774667450745554 27.371255730719955 22.448119514707884 90-91 22.414056904364664 27.835154737676028 27.37117858049131 22.379609777467994 92-93 22.438094279897882 27.826754839404437 27.440579900311224 22.294570980386457 94-95 22.247602497572903 27.90256920054381 27.494368866815893 22.355459435067395 96-97 22.23642512929647 27.99851196770317 27.658045022040522 22.107017880959834 98-99 23.344783669667134 29.980270916271156 27.786008068292027 18.888937345769683 100 29.87714987714988 41.50362250362251 28.619227619227622 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1088.0 1 987.5 2 1448.5 3 2127.5 4 2847.0 5 4698.5 6 6371.0 7 7415.5 8 7937.5 9 7689.5 10 6975.5 11 6205.0 12 6591.5 13 8835.0 14 14090.5 15 21348.5 16 27695.5 17 31985.0 18 33812.5 19 33589.5 20 32290.0 21 30920.0 22 31045.5 23 33864.5 24 40037.0 25 49913.5 26 63533.0 27 78841.5 28 94091.0 29 111687.0 30 128425.5 31 144754.0 32 163242.5 33 180905.5 34 198865.0 35 218019.0 36 237517.0 37 253594.0 38 265001.0 39 273738.0 40 284928.0 41 295389.0 42 300891.5 43 307449.5 44 316263.5 45 323570.5 46 327139.0 47 328511.0 48 328066.0 49 325606.5 50 322007.0 51 314855.0 52 302284.0 53 288231.5 54 271554.0 55 250830.0 56 229701.0 57 207531.0 58 184871.0 59 160007.0 60 134790.5 61 111336.5 62 88976.0 63 69185.0 64 52511.0 65 40417.5 66 30922.5 67 23785.0 68 18205.5 69 13330.5 70 9862.0 71 7272.5 72 5223.0 73 3627.5 74 2515.0 75 1722.5 76 1156.5 77 752.5 78 492.5 79 333.5 80 244.0 81 171.0 82 115.0 83 74.0 84 48.0 85 33.0 86 23.0 87 17.0 88 11.0 89 9.0 90 8.0 91 6.5 92 6.5 93 3.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.994749833452221E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 9.254503780830981E-4 18-19 0.00390819692039409 20-21 0.0 22-23 0.0013717056673884104 24-25 5.527843815901223E-4 26-27 0.01407787550267776 28-29 0.007880555841872047 30-31 7.21221845969986E-4 32-33 0.007104994134529348 34-35 0.005020603292359744 36-37 0.001993273142340378 38-39 0.0013887959431908934 40-41 0.003631645679896589 42-43 0.008479286986178763 44-45 0.009818615941863156 46-47 0.00896933683187024 48-49 0.007954510225197125 50-51 0.03491508434398934 52-53 0.01266243611242022 54-55 8.116077617739384E-5 56-57 0.008471605319243423 58-59 0.006704767444123042 60-61 1.6018602326602825E-4 62-63 0.0055230604357802675 64-65 0.0025206083140899586 66-67 0.02499821243819085 68-69 0.03370647654218136 70-71 0.016384378160532353 72-73 0.011872888608066087 74-75 0.017484889011317326 76-77 0.0024455681877116942 78-79 0.0028297353376750536 80-81 0.0017868911927255832 82-83 0.025229297429208538 84-85 7.68066852538845E-4 86-87 0.009592010453659483 88-89 0.0010782350784706313 90-91 0.003461478713688244 92-93 0.0013293445346390367 94-95 8.211645384004399E-4 96-97 0.0029405296014655925 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 177.0 20-21 552.0 22-23 1123.0 24-25 2547.0 26-27 4063.0 28-29 9514.0 30-31 19608.0 32-33 25294.0 34-35 34948.0 36-37 52562.0 38-39 60811.0 40-41 64393.0 42-43 69942.0 44-45 80600.0 46-47 80899.0 48-49 75454.0 50-51 68208.0 52-53 65237.0 54-55 70520.0 56-57 75050.0 58-59 74989.0 60-61 73056.0 62-63 74220.0 64-65 77431.0 66-67 81450.0 68-69 82500.0 70-71 80177.0 72-73 77034.0 74-75 78990.0 76-77 79282.0 78-79 83400.0 80-81 85397.0 82-83 81452.0 84-85 82440.0 86-87 87937.0 88-89 93684.0 90-91 100311.0 92-93 109723.0 94-95 131250.0 96-97 284012.0 98-99 1555020.0 100-101 3174600.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.84267382584332 #Duplication Level Percentage of deduplicated Percentage of total 1 89.84569287924064 76.22748815610308 2 6.949915300684832 11.79298793946482 3 1.7771706498609534 4.523397293370445 4 0.6536691019809786 2.2183613763761634 5 0.2963586754572592 1.25719312186396 6 0.15652851995081266 0.7968178897577285 7 0.09572140752477892 0.568488210974281 8 0.05802899834578276 0.3938668303273319 9 0.03967700093394682 0.3029672563763877 >10 0.12425422237494063 1.6494296879832548 >50 0.0024675174963901293 0.14007834756533363 >100 4.377064123055101E-4 0.0629505491613116 >500 2.6006654130963952E-5 0.012091477924067229 >1k 5.201308225409967E-5 0.05388186275185201 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3315832778174071E-5 2 0.0 2.6631665556348142E-5 0.0 0.0 1.3315832778174071E-5 3 1.3315832778174071E-5 2.6631665556348142E-5 0.0 1.3315832778174071E-5 1.3315832778174071E-5 4 1.3315832778174071E-5 6.657916389087036E-5 0.0 3.9947498334522216E-5 1.3315832778174071E-5 5 1.3315832778174071E-5 6.657916389087036E-5 0.0 5.3263331112696284E-5 1.3315832778174071E-5 6 1.3315832778174071E-5 6.657916389087036E-5 0.0 7.989499666904443E-5 2.6631665556348142E-5 7 1.3315832778174071E-5 6.657916389087036E-5 0.0 7.989499666904443E-5 2.6631665556348142E-5 8 1.3315832778174071E-5 7.989499666904443E-5 0.0 7.989499666904443E-5 3.9947498334522216E-5 9 1.3315832778174071E-5 1.5978999333808886E-4 0.0 1.3315832778174072E-4 3.9947498334522216E-5 10-11 2.6631665556348142E-5 1.5978999333808886E-4 0.0 1.9973749167261106E-4 3.9947498334522216E-5 12-13 2.6631665556348142E-5 1.7310582611626294E-4 0.0 2.3968499000713328E-4 3.9947498334522216E-5 14-15 2.6631665556348142E-5 2.1305332445078514E-4 0.0 2.3968499000713328E-4 3.9947498334522216E-5 16-17 2.6631665556348142E-5 2.263691572289592E-4 0.0 2.8629040473074254E-4 3.9947498334522216E-5 18-19 3.9947498334522216E-5 2.5300082278530736E-4 0.0 3.462116522325259E-4 5.3263331112696284E-5 20-21 6.657916389087036E-5 2.929483211198296E-4 0.0 4.2610664890157027E-4 6.657916389087036E-5 22-23 1.0652666222539257E-4 2.929483211198296E-4 0.0 4.660541472360925E-4 8.655291305813146E-5 24-25 1.5313207694900183E-4 3.5952748501069995E-4 0.0 4.993437291815276E-4 1.0652666222539257E-4 26-27 1.86421658894437E-4 3.9281706695613514E-4 0.0 6.325020569632684E-4 1.1984249500356664E-4 28-29 1.997374916726111E-4 3.994749833452222E-4 0.0 0.001271662030315624 1.3315832778174072E-4 30-31 1.997374916726111E-4 4.527383144579184E-4 0.0 0.0039548023351176995 1.3315832778174072E-4 32-33 2.463429063962203E-4 4.527383144579184E-4 0.0 0.008295763820802448 1.464741605599148E-4 34-35 3.0626415389800366E-4 5.725808094614851E-4 0.0 0.013821834423744687 1.5978999333808886E-4 36-37 3.0626415389800366E-4 7.190549700213999E-4 0.0 0.023662234846815327 1.5978999333808886E-4 38-39 3.0626415389800366E-4 7.32370802799574E-4 0.0 0.05005421541315633 1.5978999333808886E-4 40-41 3.462116522325259E-4 8.122657994686184E-4 0.0 0.0773450146920241 1.664479097271759E-4 42-43 3.5952748501069995E-4 8.189237158577054E-4 0.0 0.09601381224702414 1.7310582611626294E-4 44-45 3.861591505670481E-4 9.587399600285331E-4 0.0 0.11852422755852741 1.7310582611626294E-4 46-47 3.861591505670481E-4 0.0010918982878102739 0.0 0.14236622614784808 1.7310582611626294E-4 48-49 3.861591505670481E-4 0.001098556204199361 0.0 0.1651629318640821 1.7310582611626294E-4 50-51 3.9281706695613514E-4 0.0012450303647592756 0.0 0.1875601625969709 1.7310582611626294E-4 52-53 3.994749833452222E-4 0.0012516882811483628 0.0 0.2388061450437738 1.86421658894437E-4 54-55 3.994749833452222E-4 0.001271662030315624 0.0 0.2992733416894623 1.997374916726111E-4 56-57 3.994749833452222E-4 0.0012916357794828849 0.0 0.36029980331183403 1.997374916726111E-4 58-59 4.127908161233962E-4 0.001311609528650146 0.0 0.40211151823530067 1.997374916726111E-4 60-61 4.327645652906573E-4 0.0013448991105955812 0.0 0.43351690984262414 1.997374916726111E-4 62-63 4.5939623084700546E-4 0.0013448991105955812 0.0 0.4575320142580611 2.1305332445078514E-4 64-65 4.7936998001426657E-4 0.0014114782744864517 0.0 0.46600088390497985 2.1305332445078514E-4 66-67 4.926858127924406E-4 0.0014181361908755386 0.0 0.4736175402540954 2.1305332445078514E-4 68-69 4.926858127924406E-4 0.0014580836892100608 0.0 0.4813806707637709 2.1305332445078514E-4 70-71 4.926858127924406E-4 0.001498031187544583 0.0 0.48804524506924696 2.463429063962203E-4 72-73 4.926858127924406E-4 0.00150468910393367 0.0 0.4935380260902438 2.796324883416555E-4 74-75 4.926858127924406E-4 0.0015512945186572794 0.0 0.49812533048232477 2.929483211198296E-4 76-77 4.926858127924406E-4 0.0016045578497699757 0.0 0.5019802640716061 3.0626415389800366E-4 78-79 4.926858127924406E-4 0.0016245315989372369 0.0 0.504563535630572 3.0626415389800366E-4 80-81 5.060016455706147E-4 0.0016245315989372369 0.0 0.5055489072561568 3.129220702870907E-4 82-83 5.060016455706147E-4 0.0016245315989372369 0.0 0.5061414618147856 3.328958194543518E-4 84-85 5.060016455706147E-4 0.0016311895153263238 0.0 0.5063478572228473 3.328958194543518E-4 86-87 5.060016455706147E-4 0.001651163264493585 0.0 0.5064876734670181 3.328958194543518E-4 88 5.060016455706147E-4 0.0017843215922753255 0.0 0.5064943313834072 3.328958194543518E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7845 0.0 41.314583 1 GTATCAA 13215 0.0 32.358276 1 TCAACGC 15115 0.0 27.417742 4 ATCAACG 15170 0.0 27.372704 3 CAACGCA 15350 0.0 26.863676 5 AACGCAG 16020 0.0 25.997562 6 TATCAAC 16205 0.0 25.904339 2 ACGCAGA 18800 0.0 22.02164 7 CGCAGAG 19240 0.0 21.45373 8 TACATGG 20595 0.0 21.38372 2 GTACATG 21325 0.0 21.019108 1 ACATGGG 20785 0.0 20.553392 3 CATGGGG 16365 0.0 18.091818 4 GCAGAGT 23060 0.0 17.774643 9 GAGTACT 12370 0.0 17.169556 12-13 AGAGTAC 20080 0.0 17.013964 10-11 GTGGTAT 4700 0.0 16.582031 1 CAGAGTA 22225 0.0 16.104774 10-11 GAGTACA 14675 0.0 15.93231 1 TGGTATC 4760 0.0 15.160198 2 >>END_MODULE