##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140280_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7090402 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05992537517619 33.0 31.0 34.0 30.0 34.0 2 32.191775163100765 33.0 31.0 34.0 30.0 34.0 3 32.09680565361456 33.0 31.0 34.0 30.0 34.0 4 35.97868611680974 37.0 35.0 37.0 35.0 37.0 5 35.84762232099111 37.0 35.0 37.0 35.0 37.0 6 35.90527532853567 37.0 35.0 37.0 35.0 37.0 7 35.85759749588246 37.0 35.0 37.0 35.0 37.0 8 35.85138275657713 37.0 35.0 37.0 35.0 37.0 9 37.60864348735093 39.0 37.0 39.0 35.0 39.0 10-11 37.48750204854393 39.0 37.0 39.0 34.5 39.0 12-13 37.459971663101754 39.0 37.0 39.0 34.0 39.0 14-15 38.757520024957685 40.0 38.0 41.0 34.5 41.0 16-17 38.606428450742285 40.0 38.0 41.0 34.0 41.0 18-19 38.67236653154504 40.0 38.0 41.0 34.0 41.0 20-21 38.69790869010256 40.0 38.0 41.0 34.0 41.0 22-23 38.62305406251558 40.0 38.0 41.0 34.0 41.0 24-25 38.56753666210221 40.0 38.0 41.0 34.0 41.0 26-27 38.35971287872559 40.0 38.0 41.0 34.0 41.0 28-29 38.2511402720216 40.0 38.0 41.0 34.0 41.0 30-31 38.13405464142366 40.0 38.0 41.0 33.0 41.0 32-33 37.9539162517076 40.0 37.0 41.0 33.0 41.0 34-35 38.04817361102116 40.0 37.0 41.0 33.0 41.0 36-37 38.02427132613191 40.0 37.0 41.0 33.0 41.0 38-39 37.97863341421343 40.0 37.0 41.0 33.0 41.0 40-41 37.90757381728716 40.0 37.0 41.0 33.0 41.0 42-43 37.97499327803841 40.0 37.0 41.0 33.0 41.0 44-45 37.97955978224656 40.0 37.0 41.0 33.0 41.0 46-47 37.915184137757905 40.0 37.0 41.0 33.0 41.0 48-49 37.823525157762234 40.0 37.0 41.0 33.0 41.0 50-51 37.703465362530444 40.0 37.0 41.0 32.5 41.0 52-53 37.52808984187209 40.0 36.0 41.0 32.0 41.0 54-55 37.374312899922174 39.0 36.0 41.0 31.5 41.0 56-57 37.23396315281075 39.0 36.0 41.0 31.0 41.0 58-59 37.057920110089356 39.0 35.0 41.0 31.0 41.0 60-61 36.86882899576531 39.0 35.0 40.0 31.0 41.0 62-63 36.65115573032864 38.0 35.0 40.0 31.0 41.0 64-65 36.34832570689754 38.0 35.0 40.0 30.5 41.0 66-67 36.04961648102588 37.0 34.5 40.0 30.0 41.0 68-69 35.731070075156595 37.0 34.0 39.5 30.0 41.0 70-71 35.41613152477086 36.0 34.0 39.0 29.0 41.0 72-73 35.13114961508805 36.0 34.0 39.0 29.0 40.0 74-75 34.80221784783076 35.0 34.0 38.5 29.0 40.0 76-77 33.532282837314 34.5 32.0 36.5 28.0 39.0 78-79 34.23582565026956 35.0 33.0 37.0 29.0 39.0 80-81 34.147757200021786 35.0 33.5 36.5 29.0 39.0 82-83 33.92386202924668 35.0 33.0 36.0 29.0 38.0 84-85 33.69454885735934 35.0 33.0 36.0 29.0 37.0 86-87 33.4978622824664 35.0 33.0 35.0 29.0 37.0 88-89 33.33417242954037 35.0 33.0 35.0 29.0 36.5 90-91 33.21241904799329 35.0 33.0 35.0 29.0 36.0 92-93 33.16192849641365 35.0 33.0 35.0 29.0 36.0 94-95 33.0942055715238 35.0 33.0 35.0 29.0 36.0 96-97 33.13509422158143 35.0 33.0 35.0 29.0 35.0 98-99 33.25608398287136 35.0 33.0 35.0 29.0 35.0 100 32.0141986718742 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 9.0 20 47.0 21 236.0 22 1198.0 23 3977.0 24 10584.0 25 22489.0 26 40593.0 27 63873.0 28 91633.0 29 121597.0 30 153324.0 31 190099.0 32 234776.0 33 295202.0 34 392917.0 35 539947.0 36 830370.0 37 1400541.0 38 1732333.0 39 928150.0 40 36506.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.02289235504559 20.09056750237857 13.535156398748619 24.351383743827217 2 15.185542371222393 21.013533506280744 40.342395254881176 23.458528867615687 3 18.59431288831647 25.444521121073432 30.23637792203891 25.724788068571193 4 12.820203988433942 17.384895807036045 38.281355556426846 31.51354464810317 5 13.237980018622359 37.838658513297275 35.722121256312406 13.201240211767965 6 31.08428830974605 37.37568053264117 18.21836053865493 13.321670618957853 7 27.351650865493944 32.19443693037432 22.71450899398934 17.739403210142388 8 25.039623987469255 36.63596224868491 20.70882581833865 17.61558794550718 9 25.65006892415973 16.449814834194168 21.026283135991445 36.873833105654654 10-11 24.74330087349067 26.476827406965075 28.5975181661068 20.182353553437448 12-13 25.16851653827244 23.89846161049825 28.918628309086003 22.01439354214331 14-15 22.152143136595075 25.47783609448378 26.319854642938438 26.050166125982706 16-17 22.00443448472633 28.603131669726935 27.041281100945945 22.351152744600785 18-19 21.979350783650776 28.041050765089814 28.554178276673493 21.42542017458592 20-21 22.718405890997673 27.20735226613749 28.39382541999797 21.68041642286687 22-23 22.49879830878051 27.06434329117745 28.262832351819924 22.174026048222114 24-25 22.28658437000186 27.169427004668123 28.35742081305271 22.186567812277307 26-27 22.306826127879656 27.33113058391542 28.24300474823136 22.119038539973563 28-29 22.164013300021352 27.513435540521574 28.265286134753875 22.0572650247032 30-31 22.406534025747778 27.325589539695137 28.199946485557113 22.06792994899997 32-33 22.178435494691485 27.422638297824037 28.169621927865933 22.229304279618546 34-35 22.297620838717776 27.46373106449661 28.19967988479897 22.03896821198664 36-37 22.32871162684498 27.402968857700543 28.099803665155683 22.168515850298796 38-39 22.217118948230375 27.48235638568492 28.15864235123674 22.141882314847965 40-41 22.40480054043893 27.391593164087425 28.062815118182836 22.140791177290804 42-43 22.279755491026076 27.49452992097642 27.90992723045031 22.315787357547197 44-45 22.33913381891862 27.603208609406966 27.77123882342689 22.286418748247524 46-47 22.344431212610296 27.586350832252894 27.607019172020912 22.4621987831159 48-49 22.32643475841653 27.673375828530578 27.57694943156385 22.42323998148904 50-51 22.29304987296743 27.753057110090424 27.5276953975344 22.42619761940774 52-53 22.392974498468334 27.676199884516116 27.390241998257693 22.540583618757857 54-55 22.385967891310028 27.619361915246866 27.476385757508314 22.51828443593479 56-57 22.445570583298885 27.65818072394235 27.421020234067743 22.475228458691017 58-59 22.306176563369583 27.75480612892998 27.478078079370853 22.46093922832958 60-61 22.4186859380301 27.706271250883326 27.466327654716586 22.408715156369986 62-63 22.381126623056467 27.782578684571458 27.354938500492633 22.48135619187944 64-65 22.340433072261405 27.783185297334363 27.374533412564254 22.501848217839978 66-67 22.441789669428417 27.782043748079378 27.22000088610549 22.556165696386717 68-69 22.331812888534994 27.80786472105842 27.331704303442688 22.5286180869639 70-71 22.31046367241962 27.60855371515704 27.367279019311475 22.713703593111862 72-73 22.39349094682148 27.630871461817318 27.36353497769336 22.61210261366784 74-75 22.28454986318537 27.81289655620282 27.294212012658203 22.60834156795361 76-77 22.456967622530914 27.66470474054724 27.20824229384667 22.67008534307518 78-79 22.371320769535117 27.670203404054572 27.23739011134747 22.72108571506284 80-81 22.367340450896762 27.73206913908664 27.23613568742161 22.66445472259499 82-83 22.38959767658949 27.782062536674086 27.325213509226803 22.50312627750962 84-85 22.520802849201846 27.72684776728071 27.270860781781952 22.481488601735485 86-87 22.383632752167003 27.727848398992887 27.320367544772562 22.568151304067545 88-89 22.4150409953033 27.717887400187376 27.33725965863616 22.52981194587317 90-91 22.44554842978416 27.76805862420659 27.324100888398934 22.462292057610313 92-93 22.50098277130748 27.72979878254019 27.36081579924172 22.40840264691061 94-95 22.21797215847412 27.84128951090547 27.48242061387341 22.458317716747 96-97 22.250785919248948 27.94927347131494 27.60975212114828 22.19018848828783 98-99 23.35175710189197 29.92141527691114 27.733422536544044 18.993405084652846 100 29.994486887188966 41.439091720472895 28.566421392338132 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1129.0 1 1028.0 2 1465.5 3 2114.0 4 2838.0 5 4655.0 6 6345.5 7 7496.5 8 8187.0 9 7939.5 10 7077.0 11 6228.0 12 6535.0 13 8687.0 14 13685.5 15 20441.0 16 26251.5 17 29972.5 18 31408.0 19 31232.5 20 29923.5 21 28532.5 22 28630.5 23 31075.5 24 36395.5 25 45122.5 26 57007.0 27 70298.0 28 84060.5 29 100158.5 30 115995.0 31 131372.0 32 149028.0 33 166496.5 34 183285.5 35 199514.5 36 217012.5 37 232626.5 38 243967.5 39 253137.5 40 262726.5 41 273557.0 42 282258.0 43 289635.5 44 297973.5 45 305231.0 46 310341.0 47 315173.5 48 315964.0 49 311877.5 50 306877.0 51 299527.0 52 288241.5 53 275453.5 54 260009.0 55 241933.5 56 222532.5 57 201195.0 58 179515.5 59 155167.0 60 130211.0 61 106874.0 62 85685.5 63 67458.5 64 51277.5 65 39069.0 66 30070.0 67 23433.5 68 17993.0 69 13207.5 70 9561.5 71 6819.0 72 4813.5 73 3316.0 74 2186.0 75 1429.0 76 982.5 77 636.5 78 403.0 79 278.0 80 198.0 81 145.0 82 105.0 83 68.5 84 43.5 85 28.0 86 16.0 87 11.0 88 6.0 89 2.5 90 2.0 91 2.0 92 1.5 93 0.5 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.6796788108770137E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 8.885250793960625E-4 18-19 0.0035823074629619026 20-21 0.0 22-23 0.001565788839832991 24-25 4.6561769584285934E-4 26-27 0.013494771834604348 28-29 0.007621268580285509 30-31 7.923810300019513E-4 32-33 0.006711107535637329 34-35 0.004385922754359489 36-37 0.0021257823254727344 38-39 0.0015071618311049933 40-41 0.003599403153513454 42-43 0.008546841127869033 44-45 0.009832164871549472 46-47 0.009306631244519147 48-49 0.00790168815059663 50-51 0.034274597325157447 52-53 0.01301536477723863 54-55 9.364219442366975E-5 56-57 0.00886266884606317 58-59 0.006281631862732632 60-61 1.1284622936012238E-4 62-63 0.0053783199921117976 64-65 0.002357091829990054 66-67 0.023265284808294553 68-69 0.03237913577358089 70-71 0.015239952669721389 72-73 0.01127425123070021 74-75 0.016951960320479794 76-77 0.0023996164879604128 78-79 0.0026838459223869587 80-81 0.0016991242019597295 82-83 0.02482792597663691 84-85 7.802623335973063E-4 86-87 0.009397750188145822 88-89 9.112569510001628E-4 90-91 0.003344667051714472 92-93 0.00105592118362932 94-95 7.810373182713712E-4 96-97 0.00287945957625153 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 220.0 20-21 791.0 22-23 1333.0 24-25 2944.0 26-27 4354.0 28-29 9152.0 30-31 18271.0 32-33 23633.0 34-35 32638.0 36-37 49369.0 38-39 57114.0 40-41 59878.0 42-43 64208.0 44-45 74731.0 46-47 74084.0 48-49 70324.0 50-51 63223.0 52-53 60764.0 54-55 65146.0 56-57 68630.0 58-59 69254.0 60-61 67598.0 62-63 68376.0 64-65 71689.0 66-67 74941.0 68-69 75780.0 70-71 74435.0 72-73 71169.0 74-75 72654.0 76-77 72763.0 78-79 77509.0 80-81 79120.0 82-83 76464.0 84-85 77186.0 86-87 81463.0 88-89 88142.0 90-91 94081.0 92-93 102899.0 94-95 124820.0 96-97 270926.0 98-99 1485509.0 100-101 3012817.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.93550309523549 #Duplication Level Percentage of deduplicated Percentage of total 1 89.63889605137764 76.13524733025278 2 7.170638920625805 12.180836484752582 3 1.7716659595066957 4.514320187622129 4 0.6626569520054734 2.251324063925608 5 0.30940362973845525 1.3139676475663828 6 0.1468689863675962 0.748463474773144 7 0.08785561851875583 0.5223442811043529 8 0.05483188507458339 0.3725738995575899 9 0.038493928993658034 0.29425511026697554 >10 0.11664372536081509 1.5047938470356526 >50 0.0016510708269572856 0.09342297352807323 >100 3.6650728397081937E-4 0.048605306156830716 >500 2.6764319549378227E-5 0.01984539345795219 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.051786344413194E-5 0.0 0.0 0.0 3 0.0 7.051786344413194E-5 0.0 0.0 0.0 4 0.0 1.128285815106111E-4 0.0 0.0 0.0 5 0.0 1.128285815106111E-4 0.0 0.0 0.0 6 0.0 1.128285815106111E-4 0.0 0.0 1.4103572688826388E-5 7 0.0 1.128285815106111E-4 0.0 7.051786344413194E-5 1.4103572688826388E-5 8 0.0 1.4103572688826388E-4 0.0 7.051786344413194E-5 1.4103572688826388E-5 9 0.0 1.8334644495474306E-4 0.0 8.462143613295832E-5 1.4103572688826388E-5 10-11 0.0 1.8334644495474306E-4 0.0 9.872500882178472E-5 1.4103572688826388E-5 12-13 0.0 1.8334644495474306E-4 0.0 1.198803678550243E-4 2.1155359033239584E-5 14-15 0.0 2.609160947432882E-4 0.0 1.5513929957709026E-4 4.231071806647916E-5 16-17 0.0 2.8207145377652775E-4 0.0 1.8334644495474306E-4 4.231071806647916E-5 18-19 0.0 3.102785991541805E-4 0.0 2.6796788108770137E-4 4.231071806647916E-5 20-21 0.0 3.5258931722065973E-4 0.0 4.513143260424444E-4 4.231071806647916E-5 22-23 1.4103572688826388E-5 3.878482489427257E-4 0.0 6.346607709971875E-4 5.641429075530555E-5 24-25 1.4103572688826388E-5 4.3721075335361804E-4 0.0 7.96851856918691E-4 8.462143613295832E-5 26-27 1.4103572688826388E-5 4.513143260424444E-4 0.0 0.001022509019939913 8.462143613295832E-5 28-29 1.4103572688826388E-5 4.513143260424444E-4 0.0 0.0019392412447136282 8.462143613295832E-5 30-31 1.4103572688826388E-5 5.0772861679775E-4 0.0 0.004308641456436462 8.462143613295832E-5 32-33 1.4103572688826388E-5 5.0772861679775E-4 0.0 0.008723059708039122 1.128285815106111E-4 34-35 1.4103572688826388E-5 6.064536256195348E-4 0.0 0.014724129887134748 1.128285815106111E-4 36-37 1.4103572688826388E-5 6.910750617524931E-4 0.0 0.025337068335476606 1.128285815106111E-4 38-39 1.4103572688826388E-5 6.910750617524931E-4 0.0 0.051097243851618 1.128285815106111E-4 40-41 1.4103572688826388E-5 7.898000705742778E-4 0.0 0.0784581748679412 1.128285815106111E-4 42-43 1.4103572688826388E-5 8.250590022963437E-4 0.0 0.09704668367181438 1.269321541994375E-4 44-45 1.4103572688826388E-5 9.731465155290208E-4 0.0 0.11923865529768268 1.4103572688826388E-4 46-47 1.4103572688826388E-5 0.0010859750970396318 0.0 0.1420088734037929 1.4103572688826388E-4 48-49 1.4103572688826388E-5 0.0010859750970396318 0.0 0.1637565824899632 1.4103572688826388E-4 50-51 1.4103572688826388E-5 0.0011494411741393507 0.0 0.18533504870386758 1.4103572688826388E-4 52-53 1.4103572688826388E-5 0.0011564929604837638 0.0 0.23674257115463976 1.5513929957709026E-4 54-55 1.4103572688826388E-5 0.0011564929604837638 0.0 0.2964641497054751 1.6924287226591664E-4 56-57 1.4103572688826388E-5 0.0011564929604837638 0.0 0.35509270137292637 1.6924287226591664E-4 58-59 1.4103572688826388E-5 0.0011847001058614165 0.0 0.3954571264083475 1.6924287226591664E-4 60-61 1.4103572688826388E-5 0.0012199590375834824 0.0 0.4253284933632818 1.6924287226591664E-4 62-63 1.4103572688826388E-5 0.001241114396616722 0.0 0.4490648061985766 1.7629465861032986E-4 64-65 1.4103572688826388E-5 0.0013680465508161595 0.0 0.4573859140849842 1.8334644495474306E-4 66-67 1.4103572688826388E-5 0.0013680465508161595 0.0 0.46495248083253954 1.9039823129915625E-4 68-69 1.4103572688826388E-5 0.0013821501235049861 0.0 0.47240621899858426 2.0450180398798263E-4 70-71 1.4103572688826388E-5 0.0014033054825382256 0.0 0.47906310530771035 2.256571630212222E-4 72-73 1.4103572688826388E-5 0.001410357268882639 0.0 0.4845070843655973 2.53864308398875E-4 74-75 1.4103572688826388E-5 0.0014385644142602917 0.0 0.488717000813212 2.53864308398875E-4 76-77 1.4103572688826388E-5 0.0014667715596379445 0.0 0.4927717779612496 2.53864308398875E-4 78-79 1.4103572688826388E-5 0.0014808751323267708 0.0 0.49500719423242856 2.53864308398875E-4 80-81 1.4103572688826388E-5 0.0014808751323267708 0.0 0.4957899425166584 2.53864308398875E-4 82-83 1.4103572688826388E-5 0.0014808751323267708 0.0 0.4962624122017341 2.53864308398875E-4 84-85 1.4103572688826388E-5 0.0014808751323267708 0.0 0.49644575864668883 2.53864308398875E-4 86-87 1.4103572688826388E-5 0.0015090822777044236 0.0 0.4966220533052992 2.53864308398875E-4 88 1.4103572688826388E-5 0.0015796001411485555 0.0 0.4966291050916436 2.53864308398875E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8990 0.0 35.75415 1 GTATCAA 14225 0.0 28.840548 1 TCAACGC 15130 0.0 26.187027 4 ATCAACG 15165 0.0 26.017614 3 CAACGCA 15380 0.0 25.707634 5 AACGCAG 15825 0.0 25.036951 6 TATCAAC 17065 0.0 23.532415 2 GTACATG 18940 0.0 21.879002 1 TACATGG 18830 0.0 21.326643 2 ACGCAGA 18965 0.0 20.869844 7 ACATGGG 19050 0.0 20.559847 3 CGCAGAG 19505 0.0 20.376783 8 GGACCGA 1150 0.0 19.400032 6 CATGGGG 15600 0.0 18.035536 4 ACCGAAC 1045 0.0 17.791098 8 GCAGAGT 23105 0.0 17.005175 9 GAGTACT 12405 0.0 16.303614 12-13 AGAGTAC 19515 0.0 16.24873 10-11 CAGAGTA 21445 0.0 16.086813 10-11 AGGACCG 1580 0.0 15.950683 5 >>END_MODULE