##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140278_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7138908 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06800886073893 33.0 31.0 34.0 30.0 34.0 2 32.20229746622312 33.0 31.0 34.0 30.0 34.0 3 32.106441069138306 33.0 31.0 34.0 30.0 34.0 4 35.98751013460322 37.0 35.0 37.0 35.0 37.0 5 35.86082479281145 37.0 35.0 37.0 35.0 37.0 6 35.9168061838029 37.0 35.0 37.0 35.0 37.0 7 35.86937343918706 37.0 35.0 37.0 35.0 37.0 8 35.861440293109254 37.0 35.0 37.0 35.0 37.0 9 37.616166085905576 39.0 37.0 39.0 35.0 39.0 10-11 37.50067286201195 39.0 37.0 39.0 35.0 39.0 12-13 37.47584399462775 39.0 37.0 39.0 34.5 39.0 14-15 38.77653788226435 40.0 38.0 41.0 35.0 41.0 16-17 38.62618883728436 40.0 38.0 41.0 34.0 41.0 18-19 38.6964743067147 40.0 38.0 41.0 34.0 41.0 20-21 38.725345572708854 40.0 38.0 41.0 34.0 41.0 22-23 38.65357015183075 40.0 38.0 41.0 34.0 41.0 24-25 38.60180065086627 40.0 38.0 41.0 34.0 41.0 26-27 38.402585026863505 40.0 38.0 41.0 34.0 41.0 28-29 38.294285292483366 40.0 38.0 41.0 34.0 41.0 30-31 38.175961200755324 40.0 38.0 41.0 33.5 41.0 32-33 37.99542936757786 40.0 37.0 41.0 33.0 41.0 34-35 38.082620213669756 40.0 37.5 41.0 33.0 41.0 36-37 38.05839155924278 40.0 37.0 41.0 33.0 41.0 38-39 38.01222634656712 40.0 37.0 41.0 33.0 41.0 40-41 37.948091675960924 40.0 37.0 41.0 33.0 41.0 42-43 38.01088703502087 40.0 37.0 41.0 33.0 41.0 44-45 38.017104795172 40.0 37.0 41.0 33.0 41.0 46-47 37.95729786957568 40.0 37.0 41.0 33.0 41.0 48-49 37.87106290890164 40.0 37.0 41.0 33.0 41.0 50-51 37.74792630303536 40.0 37.0 41.0 33.0 41.0 52-53 37.576269294568014 40.0 36.0 41.0 32.0 41.0 54-55 37.42727309131757 39.0 36.0 41.0 32.0 41.0 56-57 37.28741105037321 39.0 36.0 41.0 31.5 41.0 58-59 37.11817524383896 39.0 35.0 41.0 31.0 41.0 60-61 36.92802586448888 39.0 35.0 40.5 31.0 41.0 62-63 36.71855398141466 38.0 35.0 40.0 31.0 41.0 64-65 36.427789339253536 38.0 35.0 40.0 31.0 41.0 66-67 36.135244712638745 37.5 34.5 40.0 30.0 41.0 68-69 35.82779686127694 37.0 34.0 39.5 30.0 41.0 70-71 35.52523185564475 36.5 34.0 39.0 30.0 41.0 72-73 35.24220675585485 36.0 34.0 39.0 29.0 40.5 74-75 34.9135351036816 35.5 34.0 38.5 29.0 40.0 76-77 33.63841202973239 34.5 32.0 36.5 28.0 39.0 78-79 34.332821259851855 35.0 33.5 37.0 29.0 39.0 80-81 34.24177519233921 35.0 34.0 37.0 29.0 39.0 82-83 34.008154072292015 35.0 33.5 36.0 29.0 38.5 84-85 33.769254084169276 35.0 33.0 36.0 29.0 37.0 86-87 33.56342076479365 35.0 33.0 35.5 29.0 37.0 88-89 33.39612869757501 35.0 33.0 35.0 29.0 36.5 90-91 33.270049831187606 35.0 33.0 35.0 29.0 36.0 92-93 33.215756795459384 35.0 33.0 35.0 29.0 36.0 94-95 33.140313956193864 35.0 33.0 35.0 29.0 36.0 96-97 33.17622843281843 35.0 33.0 35.0 29.0 35.0 98-99 33.29438085197164 35.0 33.0 35.0 29.0 35.0 100 32.124562083058635 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 8.0 20 40.0 21 225.0 22 1100.0 23 3665.0 24 9751.0 25 20593.0 26 38000.0 27 60822.0 28 87779.0 29 117799.0 30 150434.0 31 187302.0 32 233432.0 33 295079.0 34 391899.0 35 538689.0 36 824934.0 37 1384242.0 38 1752136.0 39 999085.0 40 41894.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.681052620372746 20.395500264186065 13.749651907546646 24.173795207894543 2 15.061112988148887 21.133288172364736 40.639576809226284 23.166022030260088 3 18.47709076300248 25.760450960926836 30.41285555777657 25.349602718294122 4 12.738740995121384 17.616587859095535 38.499725728360694 31.144945417422388 5 13.102606168898662 37.896748354230084 35.82550720642429 13.175138270446965 6 30.58173603021639 37.700107635509525 18.342259068193624 13.37589726608047 7 27.00858450620179 32.3974479009955 22.817747476224657 17.776220116578052 8 24.79615930055409 36.68306133094866 20.976163301165947 17.544616067331305 9 25.492988563517 16.59984972491591 21.33210009149859 36.5750616200685 10-11 24.553426098221184 26.710555732053137 28.63706185876047 20.098956310965207 12-13 25.0244435143302 24.075551891129567 29.012833615449306 21.887170979090918 14-15 22.016777636019402 25.66173986273531 26.509124364678744 25.812358136566544 16-17 21.8175079114794 28.894236321876303 27.151136904611405 22.13711886203289 18-19 21.738033830134622 28.20747046126672 28.793268685591244 21.261227023007407 20-21 22.502626388673026 27.288940016217456 28.713343063059455 21.495090532050067 22-23 22.241946813932824 27.309164224948702 28.477749380966006 21.971139580152467 24-25 22.04914742524955 27.389250693712587 28.656371397075457 21.905230483962406 26-27 22.05386743904654 27.627265763040725 28.466180068653546 21.85268672925918 28-29 21.89137091295924 27.803060929667545 28.474136369332214 21.831431788040998 30-31 22.22675978026346 27.52009580098097 28.439144632893314 21.813999785862254 32-33 21.934362292075228 27.642969687298187 28.457744273995434 21.96492374663115 34-35 22.068679927569885 27.66565228414634 28.471824914922113 21.793842873361665 36-37 22.06353359621612 27.742556295833065 28.3132006424946 21.880709465456217 38-39 21.91176915050552 27.712999676177454 28.45415752167812 21.921073651638903 40-41 22.14563316275026 27.568318800016073 28.349557728885483 21.936490308348176 42-43 22.087446377494945 27.668181034907462 28.15843135170306 22.08594123589453 44-45 22.126370164058056 27.826231853731148 27.995826482543983 22.05157149966681 46-47 22.181477308343165 27.71636045567997 27.7956704146707 22.306491821306174 48-49 22.13035223094723 27.83440990624704 27.780247583096727 22.254990279709006 50-51 22.055459167725118 27.904868612678307 27.752040271827287 22.287631947769288 52-53 22.15738025164544 27.848573750171017 27.705172141431618 22.288873856751927 54-55 22.201092349390272 27.793172337058564 27.675936242797665 22.329799070753502 56-57 22.244801879788266 27.884603546303616 27.597864665507448 22.272729908400674 58-59 22.115493629295063 28.027148484313546 27.697165308891584 22.160192577499803 60-61 22.248756196255187 27.982874990864097 27.636544030006245 22.13182478287447 62-63 22.142532444487358 28.09583093755441 27.5372110970259 22.22442552093233 64-65 22.08266117539463 28.08552636780066 27.566737637668414 22.26507481913629 66-67 22.181638260094093 28.113171683983428 27.368103410853823 22.337086645068652 68-69 22.146652462850792 28.033597172174236 27.511682103294493 22.308068261680482 70-71 22.12932245370062 27.85567429905677 27.551092805726636 22.463910441515974 72-73 22.24996788916795 27.848993051618976 27.530355469101142 22.37068359011193 74-75 22.141795806296898 27.9964617975165 27.477537851750135 22.38420454443647 76-77 22.291541965380887 27.911165738158555 27.329620618269274 22.46767167819128 78-79 22.192185185475036 27.89148920022575 27.367302616264627 22.549022998034584 80-81 22.148151380683213 27.967963089889516 27.456470797286762 22.42741473214051 82-83 22.215188742097748 27.93397271660652 27.554482981031786 22.296355560263954 84-85 22.409678168161854 27.927584113037433 27.411205939496842 22.251531779303875 86-87 22.18443261907262 28.023766835090154 27.502442908884912 22.289357636952317 88-89 22.251526259165033 27.9504891243465 27.52182471915209 22.27615989733638 90-91 22.335641409598512 27.9955767975151 27.464003067846065 22.20477872504032 92-93 22.30678058160708 27.944168459183928 27.537663117889284 22.21138784131971 94-95 22.083959137569355 28.027578830645993 27.68059365548287 22.207868376301775 96-97 22.047313766079053 28.19807993127507 27.77131754262806 21.983288760017818 98-99 23.207306111584362 30.1141547787343 27.92578390446962 18.75275520521172 100 29.623116177822467 41.515421441580784 28.86146238059675 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1149.0 1 1079.5 2 1613.0 3 2320.0 4 3179.5 5 5348.5 6 7168.0 7 8190.5 8 8700.5 9 8432.0 10 7636.5 11 6672.5 12 6977.0 13 9391.5 14 15052.5 15 22838.0 16 29488.0 17 33975.0 18 35974.5 19 35635.0 20 33950.0 21 32092.5 22 31844.5 23 34329.5 24 40020.5 25 49140.0 26 61704.5 27 75888.0 28 90822.0 29 108549.0 30 126064.5 31 143093.0 32 161085.0 33 178729.0 34 195866.5 35 212247.5 36 229017.5 37 244487.5 38 257068.0 39 265837.0 40 274220.0 41 283638.5 42 290959.0 43 298494.0 44 307371.5 45 314095.5 46 317440.5 47 319843.5 48 318914.5 49 314304.5 50 308167.5 51 297306.0 52 283536.5 53 270096.5 54 254851.0 55 236250.0 56 216090.5 57 195023.5 58 172661.5 59 148715.0 60 124125.0 61 101228.5 62 81292.5 63 63780.0 64 48860.5 65 37644.0 66 28879.5 67 22244.0 68 16975.0 69 12524.5 70 9071.0 71 6560.0 72 4801.5 73 3387.0 74 2297.5 75 1561.5 76 1066.0 77 680.0 78 438.0 79 304.5 80 216.5 81 150.0 82 110.5 83 77.5 84 52.5 85 37.0 86 27.0 87 22.0 88 17.5 89 12.5 90 9.0 91 6.0 92 3.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.6614714743487377E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0010155614836330712 18-19 0.0038171104040001635 20-21 0.0 22-23 0.0014990527247664945 24-25 6.095763178339329E-4 26-27 0.01380227708831817 28-29 0.0075909177265187375 30-31 7.662782456136898E-4 32-33 0.006899132148432078 34-35 0.004903261902065988 36-37 0.0022963027884889053 38-39 0.0016478697972738766 40-41 0.0036480031579208213 42-43 0.009030034113706923 44-45 0.010149845729027334 46-47 0.009616732964980128 48-49 0.008258786682999527 50-51 0.03481225363613681 52-53 0.013384017880612383 54-55 7.85658773310103E-5 56-57 0.008966984342009201 58-59 0.006491893850143791 60-61 1.6259643086200578E-4 62-63 0.005608912875078572 64-65 0.0023466897984817585 66-67 0.0255418995016001 68-69 0.03366748935563431 70-71 0.016627131811111633 72-73 0.011747767289082242 74-75 0.01724984138127861 76-77 0.002254452611271383 78-79 0.0029301101393822454 80-81 0.0018359505315584212 82-83 0.02574813440638434 84-85 9.201642711407266E-4 86-87 0.010171937500998427 88-89 9.775157687956244E-4 90-91 0.003270962995366964 92-93 0.0012153083890611308 94-95 7.137220511875249E-4 96-97 0.0031409917740087296 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 189.0 20-21 645.0 22-23 1260.0 24-25 3007.0 26-27 4654.0 28-29 11299.0 30-31 23422.0 32-33 28984.0 34-35 40126.0 36-37 60112.0 38-39 67930.0 40-41 69044.0 42-43 73774.0 44-45 83392.0 46-47 82888.0 48-49 75861.0 50-51 67203.0 52-53 64247.0 54-55 67817.0 56-57 71594.0 58-59 72793.0 60-61 71457.0 62-63 70741.0 64-65 73518.0 66-67 77588.0 68-69 77052.0 70-71 73378.0 72-73 69772.0 74-75 70762.0 76-77 71289.0 78-79 74358.0 80-81 76167.0 82-83 73332.0 84-85 74173.0 86-87 79349.0 88-89 84401.0 90-91 90166.0 92-93 99578.0 94-95 120491.0 96-97 263430.0 98-99 1462253.0 100-101 3015412.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.21276901023373 #Duplication Level Percentage of deduplicated Percentage of total 1 89.49220700686874 76.25878763892327 2 7.313192111877964 12.463547003138407 3 1.8497120566589635 4.72857258658574 4 0.6539476765863772 2.22898769238936 5 0.2904362345951265 1.2374437885378287 6 0.15284800028238427 0.7814760805043369 7 0.08112014981809378 0.4838730811967345 8 0.043169238429143574 0.2942856274088253 9 0.03102527577125732 0.23793746919974565 >10 0.09079602505484127 1.1340496855783766 >50 0.001210432010706549 0.06702983593963076 >100 2.8537934528671344E-4 0.053745576923992 >500 5.0412701147663507E-5 0.030263933673739068 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4007744601835463E-5 2 0.0 4.202323380550639E-5 0.0 0.0 1.4007744601835463E-5 3 0.0 4.202323380550639E-5 0.0 2.8015489203670925E-5 1.4007744601835463E-5 4 0.0 1.2606970141651916E-4 0.0 2.8015489203670925E-5 1.4007744601835463E-5 5 0.0 1.2606970141651916E-4 0.0 2.8015489203670925E-5 1.4007744601835463E-5 6 4.202323380550639E-5 1.2606970141651916E-4 0.0 2.8015489203670925E-5 2.8015489203670925E-5 7 4.202323380550639E-5 1.2606970141651916E-4 0.0 4.202323380550639E-5 4.202323380550639E-5 8 4.202323380550639E-5 1.2606970141651916E-4 0.0 4.202323380550639E-5 4.202323380550639E-5 9 4.202323380550639E-5 2.6614714743487377E-4 0.0 8.404646761101278E-5 5.603097840734185E-5 10-11 4.902710610642412E-5 2.6614714743487377E-4 0.0 8.404646761101278E-5 5.603097840734185E-5 12-13 7.003872300917732E-5 2.6614714743487377E-4 0.0 1.0505808451376596E-4 8.404646761101278E-5 14-15 7.003872300917732E-5 3.151742535412979E-4 0.0 1.120619568146837E-4 1.4007744601835464E-4 16-17 1.1906582911560144E-4 3.2217812584221567E-4 0.0 1.1906582911560144E-4 1.4007744601835464E-4 18-19 1.2606970141651916E-4 3.7120523194863976E-4 0.0 1.2606970141651916E-4 1.8210067982386103E-4 20-21 1.4007744601835464E-4 4.202323380550639E-4 0.0 1.6809293522202553E-4 2.6614714743487377E-4 22-23 1.4007744601835464E-4 4.6225557186057025E-4 0.0 2.1712004132844968E-4 2.6614714743487377E-4 24-25 1.4708131831927236E-4 5.182865502679121E-4 0.0 3.2217812584221567E-4 2.6614714743487377E-4 26-27 1.5408519062019008E-4 5.46302039471583E-4 0.0 4.1322846575414616E-4 2.6614714743487377E-4 28-29 1.5408519062019008E-4 5.46302039471583E-4 0.0 0.0012326815249615207 2.8015489203670927E-4 30-31 1.6809293522202556E-4 5.603097840734185E-4 0.0 0.004237342742055228 3.0116650893946247E-4 32-33 1.6809293522202556E-4 5.603097840734185E-4 0.0 0.00910503399119305 3.0817038124038017E-4 34-35 1.7509680752294328E-4 6.583639962862667E-4 0.0 0.015226418382195147 3.0817038124038017E-4 36-37 1.8910455212477873E-4 7.56418208499115E-4 0.0 0.025459075813835955 3.0817038124038017E-4 38-39 1.9610842442569648E-4 7.56418208499115E-4 0.0 0.05517650598662989 3.0817038124038017E-4 40-41 1.9610842442569648E-4 8.544724207119632E-4 0.0 0.08728926048633769 3.0817038124038017E-4 42-43 2.0311229672661423E-4 9.034995268183874E-4 0.0 0.10600360727438987 3.151742535412979E-4 44-45 2.1011616902753195E-4 0.0010575847174385774 0.0 0.1285700838279468 3.2217812584221567E-4 46-47 2.1011616902753195E-4 0.0011486350573505079 0.0 0.15159181208106337 3.361858704440511E-4 48-49 2.1011616902753195E-4 0.0011486350573505079 0.0 0.17330381621390833 3.361858704440511E-4 50-51 2.3112778593028512E-4 0.0013097241202716158 0.0 0.19401426660772209 3.5019361504588656E-4 52-53 2.3813165823120287E-4 0.0013167279925725335 0.0 0.2502343495671887 3.5019361504588656E-4 54-55 2.3813165823120287E-4 0.0013167279925725335 0.0 0.31705129131794385 3.5019361504588656E-4 56-57 2.3813165823120287E-4 0.0013447434817762045 0.0 0.3802682427060273 3.6420135964772206E-4 58-59 2.3813165823120287E-4 0.0013447434817762045 0.0 0.41836930802301975 3.782091042495575E-4 60-61 2.3813165823120287E-4 0.0014077783324844642 0.0 0.4436953102631383 3.782091042495575E-4 62-63 2.6614714743487377E-4 0.0014287899493872172 0.0 0.4623746376896859 3.9221684885139296E-4 64-65 2.6614714743487377E-4 0.0016248983738129136 0.0 0.47040807921883854 4.062245934532284E-4 66-67 2.731510197357915E-4 0.0016319022461138313 0.0 0.47711778888311773 4.062245934532284E-4 68-69 2.8015489203670927E-4 0.0016599177353175023 0.0 0.4837784714412905 4.2023233805506385E-4 70-71 3.0116650893946247E-4 0.00166692160761842 0.0 0.4897877938754779 4.3424008265689935E-4 72-73 3.361858704440511E-4 0.001673925479919338 0.0 0.49476054320912943 4.3424008265689935E-4 74-75 3.361858704440511E-4 0.0017369603306275974 0.0 0.4990259014403884 4.482478272587348E-4 76-77 3.571974873468043E-4 0.0018069990536367748 0.0 0.5030951512472216 4.6225557186057025E-4 78-79 3.782091042495575E-4 0.001849022287442281 0.0 0.5051753013205942 4.6225557186057025E-4 80-81 3.782091042495575E-4 0.001849022287442281 0.0 0.5059667388905978 4.902710610642411E-4 82-83 3.782091042495575E-4 0.001849022287442281 0.0 0.5063869712286528 5.182865502679121E-4 84-85 3.782091042495575E-4 0.001849022287442281 0.0 0.5065970873976804 5.392981671706653E-4 86-87 3.8521297655047526E-4 0.001877037776645952 0.0 0.5066531183760878 5.673136563743362E-4 88 3.9221684885139296E-4 0.0019330687550532938 0.0 0.5066601222483887 5.743175286752539E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8180 0.0 42.973553 1 GTATCAA 14240 0.0 33.201912 1 ATCAACG 16565 0.0 27.824562 3 TCAACGC 16670 0.0 27.575571 4 CAACGCA 16835 0.0 27.32964 5 AACGCAG 17415 0.0 26.584116 6 TATCAAC 17620 0.0 26.36783 2 ACGCAGA 20625 0.0 22.327475 7 CGCAGAG 21040 0.0 21.867609 8 TACATGG 20680 0.0 20.643553 2 GTACATG 21265 0.0 20.634377 1 ACATGGG 20965 0.0 19.796198 3 CGTCGAA 360 1.0461337E-4 18.87472 94 GTGGTAT 4805 0.0 18.758432 1 GCAGAGT 24590 0.0 18.477373 9 CATGGGG 15880 0.0 17.44068 4 GAGTACT 13615 0.0 17.44015 12-13 GGACCGA 1170 0.0 16.808256 6 TACACCG 830 0.0 16.782942 5 AGAGTAC 22020 0.0 16.726732 10-11 >>END_MODULE