##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140277_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7033985 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06289251398745 33.0 31.0 34.0 30.0 34.0 2 32.20074054749904 33.0 31.0 34.0 30.0 34.0 3 32.10584782310454 33.0 31.0 34.0 30.0 34.0 4 35.98377519997555 37.0 35.0 37.0 35.0 37.0 5 35.856527843036346 37.0 35.0 37.0 35.0 37.0 6 35.91027859740958 37.0 35.0 37.0 35.0 37.0 7 35.864712534928636 37.0 35.0 37.0 35.0 37.0 8 35.855396763001345 37.0 35.0 37.0 35.0 37.0 9 37.61180269790169 39.0 37.0 39.0 35.0 39.0 10-11 37.49698385765679 39.0 37.0 39.0 35.0 39.0 12-13 37.474436965674506 39.0 37.0 39.0 34.5 39.0 14-15 38.78000727894643 40.0 38.0 41.0 35.0 41.0 16-17 38.63069732164627 40.0 38.0 41.0 34.0 41.0 18-19 38.698210687114056 40.0 38.0 41.0 34.0 41.0 20-21 38.724828547890354 40.0 38.0 41.0 34.0 41.0 22-23 38.65411481265443 40.0 38.0 41.0 34.0 41.0 24-25 38.60132636138188 40.0 38.0 41.0 34.0 41.0 26-27 38.40445051666391 40.0 38.0 41.0 34.0 41.0 28-29 38.301109976031114 40.0 38.0 41.0 34.0 41.0 30-31 38.185883374521964 40.0 38.0 41.0 33.5 41.0 32-33 38.01138655044746 40.0 37.0 41.0 33.0 41.0 34-35 38.09806378903039 40.0 38.0 41.0 33.0 41.0 36-37 38.07505135699826 40.0 37.5 41.0 33.0 41.0 38-39 38.03064670747999 40.0 37.0 41.0 33.0 41.0 40-41 37.96417252535129 40.0 37.0 41.0 33.0 41.0 42-43 38.02645997414287 40.0 37.0 41.0 33.0 41.0 44-45 38.03341592661939 40.0 37.0 41.0 33.0 41.0 46-47 37.974846623189976 40.0 37.0 41.0 33.0 41.0 48-49 37.88457100540608 40.0 37.0 41.0 33.0 41.0 50-51 37.76564004238189 40.0 37.0 41.0 33.0 41.0 52-53 37.58924704807271 40.0 36.5 41.0 32.0 41.0 54-55 37.43835358053221 39.0 36.0 41.0 32.0 41.0 56-57 37.298293910161064 39.0 36.0 41.0 31.5 41.0 58-59 37.12458144567832 39.0 35.0 41.0 31.0 41.0 60-61 36.93314744449057 39.0 35.0 40.5 31.0 41.0 62-63 36.7210935478127 38.0 35.0 40.0 31.0 41.0 64-65 36.41903953298759 38.0 35.0 40.0 31.0 41.0 66-67 36.123041372861266 37.0 34.5 40.0 30.0 41.0 68-69 35.80798870608708 37.0 34.0 39.5 30.0 41.0 70-71 35.49589870892254 36.0 34.0 39.0 30.0 41.0 72-73 35.20563193612617 36.0 34.0 39.0 29.0 40.5 74-75 34.874989933994854 35.5 34.0 38.5 29.0 40.0 76-77 33.59800157468207 34.5 32.0 36.5 28.0 39.0 78-79 34.283917033793855 35.0 33.5 37.0 29.0 39.0 80-81 34.19539979537682 35.0 34.0 36.5 29.0 39.0 82-83 33.968858187153714 35.0 33.5 36.0 29.0 38.0 84-85 33.736722189056735 35.0 33.0 36.0 29.0 37.0 86-87 33.54232488678173 35.0 33.0 35.0 29.0 37.0 88-89 33.38060420735106 35.0 33.0 35.0 29.0 36.5 90-91 33.25688876594387 35.0 33.0 35.0 29.0 36.0 92-93 33.207907047681005 35.0 33.0 35.0 29.0 36.0 94-95 33.14011844500435 35.0 33.0 35.0 29.0 36.0 96-97 33.17827823731141 35.0 33.0 35.0 29.0 35.0 98-99 33.294265434996944 35.0 33.0 35.0 29.0 35.0 100 32.11467509239262 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 8.0 20 36.0 21 220.0 22 1026.0 23 3648.0 24 9739.0 25 21238.0 26 38065.0 27 60890.0 28 87114.0 29 116100.0 30 147439.0 31 183778.0 32 227594.0 33 286473.0 34 380548.0 35 524443.0 36 806520.0 37 1367842.0 38 1737122.0 39 991088.0 40 43049.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.60018822900532 20.255943110484314 13.70942644887642 24.434442211633947 2 15.122267107478905 21.14715911393044 40.385542476988505 23.345031301602152 3 18.47922869019529 25.542905650404172 30.386239210731596 25.591626448668936 4 12.819418864271107 17.584982054980212 38.31832169104711 31.27727738970157 5 13.312823385321407 37.73573585954477 35.68514860352987 13.266292151603961 6 30.80199915126347 37.53468339781788 18.333917402439724 13.32940004847892 7 27.192125089831727 32.23777133445693 22.779064783334054 17.791038792377297 8 24.889902381082702 36.55577883660543 20.966834589496568 17.58748419281531 9 25.579454605035412 16.640638272615025 21.150130402609616 36.62977671973995 10-11 24.63278639348819 26.63966442919625 28.603515645825233 20.12403353149033 12-13 25.0271076779379 23.95811904631585 28.901156314663734 22.113616961082517 14-15 22.106451748191102 25.522815303131868 26.326001548197787 26.044731400479243 16-17 22.010654960322903 28.757772884969903 26.99511807591428 22.23645407879291 18-19 21.98460643213254 28.04948649483623 28.528976926424537 21.436930146606695 20-21 22.702256589939978 27.222616157210982 28.392862537777773 21.682264715071263 22-23 22.473405484339043 27.183679360039587 28.18135671664817 22.161558438973202 24-25 22.261888813324447 27.278289236219848 28.33254118664995 22.12728076380575 26-27 22.265998952754426 27.49583805257856 28.166772434675213 22.071390559991805 28-29 22.153767200143083 27.609682773484977 28.176351946340223 22.060198080031714 30-31 22.42775695535444 27.405864993935424 28.123947296067755 22.042430754642382 32-33 22.22274724417172 27.490590771402818 28.106906878527344 22.17975510589812 34-35 22.306506704499757 27.514237748977223 28.1173320538201 22.06192349270292 36-37 22.34594241717948 27.48415958821698 28.0491856124099 22.120712382193645 38-39 22.169951172609903 27.54566928155862 28.134798081974193 22.149581463857285 40-41 22.421299589966733 27.44287873465327 27.998047249766056 22.137774425613944 42-43 22.34205809528363 27.502157590193832 27.87703492398443 22.278749390538106 44-45 22.352674121389114 27.641043469966352 27.723216620393178 22.28306578825136 46-47 22.392705243944913 27.51059775853164 27.584934196504445 22.511762801019 48-49 22.342616781117925 27.659237302142415 27.554611267639434 22.44353464910023 50-51 22.271709181009157 27.726907935113047 27.55404353287107 22.447339351006722 52-53 22.405767090475308 27.670311072693394 27.44960445054484 22.474317386286458 54-55 22.42826314123483 27.573620729004183 27.471579757586294 22.526536372174686 56-57 22.441619072683725 27.672061029065915 27.40549102326173 22.480828874988628 58-59 22.34314785205891 27.75754296549713 27.47043059565865 22.428878586785313 60-61 22.47494422608354 27.73218405765502 27.432095101263542 22.3607766149979 62-63 22.398049197186072 27.85272814923373 27.32010896905257 22.42911368452763 64-65 22.32074688275023 27.81771449366119 27.35747057738224 22.504068046206346 66-67 22.39141525318233 27.850004709079606 27.160154678199405 22.598425359538655 68-69 22.396189166378836 27.789938384609954 27.253512908209927 22.560359540801286 70-71 22.327080385377045 27.606202728567155 27.358125433761494 22.708591452294307 72-73 22.430630438938646 27.57793356608665 27.30540012725457 22.686035867720136 74-75 22.35752987992825 27.769856364972217 27.2748931608023 22.597720594297236 76-77 22.457027388671854 27.720879613210847 27.115948888707962 22.706144109409333 78-79 22.396162632957576 27.669725660526762 27.166309066413852 22.767802640101813 80-81 22.391851293950026 27.70856630282026 27.200341504050535 22.69924089917918 82-83 22.431285733550897 27.675341011560374 27.325732843957457 22.567640410931272 84-85 22.553165370302803 27.702939361153316 27.22818131199785 22.515713956546033 86-87 22.392168756097018 27.7641304861766 27.272006974857394 22.571693782868984 88-89 22.482317879563034 27.76048926355621 27.22974667732964 22.52744617955112 90-91 22.46666174183817 27.815618923046415 27.280084750705115 22.437634584410297 92-93 22.50678898466447 27.72328201746277 27.303267524423504 22.46666147344926 94-95 22.303671236812043 27.835956406467062 27.382181217468656 22.47819113925224 96-97 22.279000059816852 27.948243607142683 27.538865861535516 22.233890471504953 98-99 23.4316557603854 29.882679807049488 27.659798828306215 19.025865604258897 100 30.021150221553295 41.400794121234924 28.578055657211777 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1040.0 1 965.0 2 1394.0 3 2024.5 4 2685.0 5 4328.5 6 5809.0 7 6680.0 8 7105.0 9 6871.5 10 6288.0 11 5695.0 12 6088.5 13 8187.5 14 13090.5 15 19865.0 16 25687.0 17 29605.0 18 31435.0 19 31277.0 20 30046.0 21 28778.0 22 28797.0 23 31518.0 24 37662.0 25 47258.5 26 59749.5 27 73543.0 28 87934.5 29 104389.5 30 119957.0 31 135060.5 32 151600.5 33 167839.5 34 184025.5 35 200307.5 36 218273.5 37 234495.5 38 246254.5 39 256185.5 40 267418.0 41 279727.5 42 289010.0 43 296263.0 44 304177.5 45 312402.0 46 318345.5 47 322080.0 48 323141.0 49 318838.0 50 311754.0 51 302813.0 52 290047.0 53 274084.5 54 256816.5 55 239582.5 56 220995.0 57 200227.5 58 178427.5 59 154383.5 60 129775.0 61 107302.5 62 87073.5 63 68771.0 64 52659.5 65 40163.5 66 30576.0 67 23687.5 68 18438.5 69 13756.0 70 10287.0 71 7601.5 72 5531.5 73 3970.0 74 2781.5 75 1893.5 76 1274.0 77 855.5 78 554.0 79 353.0 80 251.5 81 192.0 82 145.0 83 87.0 84 43.0 85 24.0 86 13.5 87 6.5 88 3.5 89 3.0 90 3.0 91 2.5 92 1.5 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 3.9806738285623304E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.001108901995099506 18-19 0.0038100735216239443 20-21 0.0 22-23 0.0013010046243960547 24-25 6.470815236679312E-4 26-27 0.013906796012910913 28-29 0.007603425813203477 30-31 7.704609825004055E-4 32-33 0.007123085849649913 34-35 0.004717407174946195 36-37 0.0021789208159906435 38-39 0.0017972949396065064 40-41 0.004110495733903184 42-43 0.009106136835181161 44-45 0.010299825272707681 46-47 0.009142148484390775 48-49 0.008197549962093105 50-51 0.03542531446134489 52-53 0.013439117710050325 54-55 7.199498914875526E-5 56-57 0.008682861673759559 58-59 0.006871419122496027 60-61 1.989700976130718E-4 62-63 0.005512761497464045 64-65 0.002573786334451727 66-67 0.025329635992560676 68-69 0.03431840146927783 70-71 0.016301687538664542 72-73 0.012080464857721608 74-75 0.01727542021801526 76-77 0.0023458500532645954 78-79 0.0030217512932675847 80-81 0.0016654763872826874 82-83 0.026071177290823453 84-85 9.255596713191466E-4 86-87 0.0102171141706626 88-89 9.751397666822286E-4 90-91 0.0035604833008217552 92-93 0.0013243571810087598 94-95 8.417973033076667E-4 96-97 0.003248662862438554 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 162.0 20-21 556.0 22-23 1218.0 24-25 2305.0 26-27 4427.0 28-29 11029.0 30-31 23245.0 32-33 29183.0 34-35 40678.0 36-37 60605.0 38-39 68334.0 40-41 69909.0 42-43 75160.0 44-45 84667.0 46-47 83571.0 48-49 77130.0 50-51 68317.0 52-53 65570.0 54-55 70675.0 56-57 73827.0 58-59 73514.0 60-61 73132.0 62-63 72045.0 64-65 75425.0 66-67 79425.0 68-69 78230.0 70-71 74441.0 72-73 71593.0 74-75 72565.0 76-77 72974.0 78-79 76506.0 80-81 77898.0 82-83 74867.0 84-85 75769.0 86-87 80490.0 88-89 85186.0 90-91 90650.0 92-93 98713.0 94-95 119956.0 96-97 260618.0 98-99 1429285.0 100-101 2910135.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.22627926389472 #Duplication Level Percentage of deduplicated Percentage of total 1 90.22275337749137 76.89349575307581 2 6.6655477303078 11.361596646200644 3 1.6885498490535025 4.317264629593232 4 0.6344821575730077 2.1629821419710247 5 0.2941785998546477 1.2535873752336875 6 0.15760011120512954 0.8059002653753542 7 0.09567685847993422 0.5707927861932105 8 0.05834992753746787 0.3978357775469007 9 0.041262606878979396 0.3164992611321782 >10 0.14009622650845696 1.7972134697933253 >50 0.0011927695007389414 0.06605178586519998 >100 2.82528656977496E-4 0.041750242377055186 >500 2.7256951965030914E-5 0.015029865642351248 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 9.951684571405825E-5 0.0 1.4216692244865464E-5 0.0 5 0.0 9.951684571405825E-5 0.0 1.4216692244865464E-5 0.0 6 0.0 9.951684571405825E-5 0.0 1.4216692244865464E-5 0.0 7 0.0 9.951684571405825E-5 0.0 1.4216692244865464E-5 0.0 8 0.0 9.951684571405825E-5 0.0 1.4216692244865464E-5 0.0 9 0.0 2.2746707591784742E-4 0.0 4.265007673459639E-5 0.0 10-11 0.0 2.2746707591784742E-4 0.0 5.6866768979461854E-5 0.0 12-13 1.4216692244865464E-5 2.2746707591784742E-4 0.0 6.397511510189459E-5 2.1325038367298196E-5 14-15 1.4216692244865464E-5 2.91442191019742E-4 0.0 7.108346122432732E-5 4.975842285702912E-5 16-17 1.4216692244865464E-5 2.985505371421747E-4 0.0 9.240849959162552E-5 5.6866768979461854E-5 18-19 1.4216692244865464E-5 3.4830895999920386E-4 0.0 1.563836146935201E-4 7.108346122432732E-5 20-21 1.4216692244865464E-5 3.98067382856233E-4 0.0 2.0614203755054924E-4 8.530015346919278E-5 22-23 1.4216692244865464E-5 4.407174595908294E-4 0.0 2.701171526524438E-4 8.530015346919278E-5 24-25 1.4216692244865464E-5 4.975842285702912E-4 0.0 2.985505371421748E-4 1.1373353795892371E-4 26-27 1.4216692244865464E-5 5.402343053048876E-4 0.0 4.265007673459639E-4 1.1373353795892371E-4 28-29 1.4216692244865464E-5 5.402343053048876E-4 0.0 0.0014856443395884409 1.2795023020378918E-4 30-31 1.4216692244865464E-5 6.539678432638113E-4 0.0 0.004528016479989651 1.350585763262219E-4 32-33 1.4216692244865464E-5 6.539678432638113E-4 0.0 0.009617592303651487 1.4216692244865465E-4 34-35 1.4216692244865464E-5 7.67701381222735E-4 0.0 0.01575920335343337 1.4216692244865465E-4 36-37 1.4216692244865464E-5 8.885432653040915E-4 0.0 0.02804242545299713 1.4216692244865465E-4 38-39 1.4216692244865464E-5 9.525183804059861E-4 0.0 0.059447098621904934 1.4216692244865465E-4 40-41 1.4216692244865464E-5 0.001165768764078968 0.0 0.09262885832142093 1.4216692244865465E-4 42-43 1.4216692244865464E-5 0.0011942021485686991 0.0 0.11297294492382341 1.4216692244865465E-4 44-45 1.4216692244865464E-5 0.0013861274938743828 0.0 0.13832130719641855 1.563836146935201E-4 46-47 1.4216692244865464E-5 0.0015567278008127685 0.0 0.16349196081595285 1.563836146935201E-4 48-49 1.4216692244865464E-5 0.0015780528391800665 0.0 0.18702058648120518 1.563836146935201E-4 50-51 1.4216692244865464E-5 0.0016633529926492593 0.0 0.20994500272605074 1.8481699918325103E-4 52-53 1.4216692244865464E-5 0.0016775696848941248 0.0 0.2693423429250986 1.8481699918325103E-4 54-55 1.4216692244865464E-5 0.0016775696848941248 0.0 0.3411082053771795 1.8481699918325103E-4 56-57 1.4216692244865464E-5 0.0016775696848941248 0.0 0.4078982255435575 1.990336914281165E-4 58-59 1.4216692244865464E-5 0.0016775696848941248 0.0 0.44907687463081025 2.2035872979541467E-4 60-61 1.4216692244865464E-5 0.0017131114155062885 0.0 0.47655774074013524 2.2746707591784742E-4 62-63 1.4216692244865464E-5 0.0017344364538735865 0.0 0.49596352565437657 2.3457542204028016E-4 64-65 1.4216692244865464E-5 0.0018766033763222413 0.0 0.5037187312739506 2.4168376816271288E-4 66-67 1.4216692244865464E-5 0.0018908200685671067 0.0 0.5113815283939331 2.4168376816271288E-4 68-69 1.4216692244865464E-5 0.001912145106934405 0.0 0.5185396329392229 2.5590046040757837E-4 70-71 1.4216692244865464E-5 0.0019476868375465685 0.0 0.5251361781408406 2.701171526524438E-4 72-73 1.4216692244865464E-5 0.001961903529791434 0.0 0.5301973205800126 2.701171526524438E-4 74-75 1.4216692244865464E-5 0.001990336914281165 0.0 0.534704012021635 2.701171526524438E-4 76-77 1.4216692244865464E-5 0.002075637067750358 0.0 0.5388339611187685 2.701171526524438E-4 78-79 1.4216692244865464E-5 0.0021182871444849543 0.0 0.5414924825685582 2.701171526524438E-4 80-81 1.4216692244865464E-5 0.0021253954906073867 0.0 0.5423810258338624 2.701171526524438E-4 82-83 1.4216692244865464E-5 0.0021325038367298195 0.0 0.5428075266012082 2.701171526524438E-4 84-85 1.4216692244865464E-5 0.002146720528974685 0.0 0.5429710185620242 2.701171526524438E-4 86-87 1.4216692244865464E-5 0.0021609372212195504 0.0 0.5430989687922281 2.701171526524438E-4 88 1.4216692244865464E-5 0.0022604540669336087 0.0 0.5431060771383505 2.701171526524438E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6935 0.0 43.268543 1 GTATCAA 12025 0.0 31.91348 1 TCAACGC 13740 0.0 27.157566 4 ATCAACG 13815 0.0 27.069235 3 CAACGCA 14140 0.0 26.302704 5 TATCAAC 14730 0.0 25.74805 2 AACGCAG 14765 0.0 25.216965 6 ACGCAGA 17165 0.0 21.691143 7 TACATGG 18000 0.0 21.161213 2 GTACATG 18670 0.0 20.926617 1 CGCAGAG 17865 0.0 20.795519 8 ACATGGG 18595 0.0 19.869356 3 CATGGGG 14330 0.0 18.461212 4 GCAGAGT 20910 0.0 17.610996 9 GAGTACT 11465 0.0 17.201006 12-13 GTGGTAT 4415 0.0 16.737064 1 TATACCG 415 1.8189894E-12 16.723694 5 CAGAGTA 20205 0.0 16.20521 10-11 AGAGTAC 18620 0.0 15.896351 10-11 TGGTATC 4300 0.0 15.665594 2 >>END_MODULE