##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140271_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8514190 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.631918479620495 33.0 33.0 33.0 33.0 33.0 2 32.662956781561135 33.0 33.0 33.0 33.0 33.0 3 32.699937633527085 33.0 33.0 33.0 33.0 33.0 4 36.62918351598919 37.0 37.0 37.0 37.0 37.0 5 36.641039723097556 37.0 37.0 37.0 37.0 37.0 6 36.62288790830367 37.0 37.0 37.0 37.0 37.0 7 36.60332127894726 37.0 37.0 37.0 37.0 37.0 8 36.585675912799694 37.0 37.0 37.0 37.0 37.0 9 36.61622268236908 37.0 37.0 37.0 37.0 37.0 10-11 36.59487537863261 37.0 37.0 37.0 37.0 37.0 12-13 36.59080352916719 37.0 37.0 37.0 37.0 37.0 14-15 38.706892963394054 40.0 37.0 40.0 37.0 40.0 16-17 38.64789052158808 40.0 37.0 40.0 37.0 40.0 18-19 38.67531838025696 40.0 37.0 40.0 37.0 40.0 20-21 38.68636226185349 40.0 37.0 40.0 37.0 40.0 22-23 38.67807291639176 40.0 37.0 40.0 37.0 40.0 24-25 38.680617774439135 40.0 37.0 40.0 37.0 40.0 26-27 38.614163480259535 40.0 37.0 40.0 37.0 40.0 28-29 38.512638585550036 40.0 37.0 40.0 37.0 40.0 30-31 38.38354930911107 40.0 37.0 40.0 37.0 40.0 32-33 38.27311025227688 40.0 37.0 40.0 37.0 40.0 34-35 38.23249676702058 40.0 37.0 40.0 37.0 40.0 36-37 38.21323197008617 40.0 37.0 40.0 37.0 40.0 38-39 38.174944404864995 40.0 37.0 40.0 37.0 40.0 40-41 38.14504207637741 40.0 37.0 40.0 37.0 40.0 42-43 38.10564998580894 40.0 37.0 40.0 37.0 40.0 44-45 38.00896627597165 40.0 37.0 40.0 33.0 40.0 46-47 37.92357638488765 40.0 37.0 40.0 33.0 40.0 48-49 37.860136430726385 40.0 37.0 40.0 33.0 40.0 50-51 37.831332221284384 40.0 37.0 40.0 33.0 40.0 52-53 37.783101618294246 40.0 37.0 40.0 33.0 40.0 54-55 37.680611897630314 40.0 37.0 40.0 33.0 40.0 56-57 37.51526857657362 40.0 37.0 40.0 33.0 40.0 58-59 37.297921938965004 38.5 37.0 40.0 33.0 40.0 60-61 37.15038143846682 37.0 37.0 40.0 33.0 40.0 62-63 37.02985998409454 37.0 37.0 40.0 33.0 40.0 64-65 36.858798746303776 37.0 37.0 40.0 33.0 40.0 66-67 36.64075146890876 37.0 37.0 40.0 33.0 40.0 68-69 36.435908214599905 37.0 37.0 40.0 33.0 40.0 70-71 36.209567102428565 37.0 37.0 40.0 33.0 40.0 72-73 35.908157725428964 37.0 37.0 37.0 33.0 40.0 74-75 35.56948818904664 37.0 33.0 37.0 33.0 40.0 76-77 33.32540915896857 35.0 33.0 37.0 27.0 37.0 78-79 35.06298863358009 37.0 33.0 37.0 33.0 37.0 80-81 35.28866171430235 37.0 33.0 37.0 33.0 37.0 82-83 35.1394310301321 37.0 33.0 37.0 33.0 37.0 84-85 34.96555464272218 37.0 33.0 37.0 33.0 37.0 86-87 34.84455191462244 37.0 33.0 37.0 33.0 37.0 88-89 34.73303662370313 37.0 33.0 37.0 33.0 37.0 90-91 34.661160412635326 37.0 33.0 37.0 33.0 37.0 92-93 34.58070644635144 37.0 33.0 37.0 33.0 37.0 94-95 34.575330077106514 37.0 33.0 37.0 33.0 37.0 96-97 34.613608679520354 37.0 33.0 37.0 33.0 37.0 98-99 34.622021258309985 37.0 33.0 37.0 33.0 37.0 100 34.550595544662634 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 42.0 21 214.0 22 821.0 23 2518.0 24 6108.0 25 12413.0 26 22654.0 27 36539.0 28 55340.0 29 79279.0 30 109802.0 31 148354.0 32 199737.0 33 270632.0 34 381141.0 35 568269.0 36 1021028.0 37 2521725.0 38 3000865.0 39 76705.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50845823266805 20.49264815560846 14.853380063165138 23.14551354855835 2 14.184461053386975 20.737924080545866 42.90075762069166 22.176857245375494 3 18.217810502232158 26.179401681193397 30.42810883947856 25.174678977095883 4 12.310260870382269 18.00198257262288 39.36861874118384 30.319137815811015 5 13.148579019260787 37.680119893965255 35.728190233011006 13.443110853762954 6 29.355640407366995 38.106972007906805 19.014762414275463 13.522625170450741 7 26.164379700241597 32.86131740071575 23.350171889516208 17.62413100952645 8 23.690486117880855 37.36583280382514 21.28573593025291 17.657945148041094 9 24.971183400887227 17.56157661503913 22.048298193956207 35.418941790117444 10-11 23.723812834808715 27.27459100630829 28.972926373501178 20.028669785381815 12-13 24.509911996144968 24.744461694728315 29.497280657681184 21.248345651445536 14-15 21.62556989671021 26.165041088939855 27.358548017550778 24.850840996799153 16-17 20.865132208701002 29.427021243359615 28.134602352073422 21.57324419586596 18-19 20.823031903210993 28.339295928326713 30.26997283358722 20.567699334875073 20-21 21.545470113458286 27.442756994801247 30.400696925498643 20.61107596624182 22-23 21.30024087888461 27.33146920849206 30.268273402966773 21.100016509656562 24-25 21.021747471892223 27.51855621825106 30.350821727546386 21.10887458231033 26-27 20.992442463814264 27.662009132833287 30.27995560328696 21.065592800065485 28-29 20.92746049231304 27.666268435813407 30.31388633454425 21.092384737329304 30-31 21.132815288121876 27.645876816695164 30.18202860250244 21.039279292680522 32-33 20.9462568791421 27.798164131898474 30.068457836846928 21.187121152112496 34-35 21.121681203094013 27.799701497772983 30.06971449649201 21.00890280264099 36-37 21.101728064442867 27.721512727815416 29.997480109595987 21.179279098145734 38-39 21.02749212647206 27.93446618277239 29.99765988024009 21.04038181051546 40-41 21.22892556686909 27.819809188415253 29.825871688810583 21.125393555905077 42-43 21.133149856988634 27.945467703992055 29.559033774237918 21.362348664781393 44-45 21.234222733885204 28.046401509913498 29.384121762748972 21.335253993452326 46-47 21.336035942246614 28.123413037430407 29.036505364073374 21.50404565624961 48-49 21.327986950127322 28.23156828140255 28.869921469087057 21.570523299383073 50-51 21.3668141403197 28.344570270713476 28.758805862825465 21.52980972614136 52-53 21.52053806951959 28.30492039808729 28.56012897879763 21.614412553595493 54-55 21.525162450701803 28.208314937563028 28.60426846071108 21.662254151024086 56-57 21.459765585260662 28.28498712699587 28.6378363595657 21.61741092817777 58-59 21.46491553860953 28.276289010259966 28.61473735075925 21.644058100371254 60-61 21.515828389620317 28.27328904927065 28.602208651007576 21.608673910101455 62-63 21.53407589775612 28.353931155303936 28.540208518834042 21.571784428105904 64-65 21.53914824391629 28.27322608864326 28.468275176007506 21.71935049143294 66-67 21.572084437105637 28.296957823023106 28.343968129232337 21.78698961063892 68-69 21.494910470274515 28.308925985168855 28.40992146206331 21.786242082493324 70-71 21.57638661777167 28.173655118594233 28.41762122090173 21.832337042732362 72-73 21.652470026075033 28.19275138812133 28.27996846691275 21.874810118890892 74-75 21.5429147169534 28.32670644721768 28.253065535900955 21.877313299927962 76-77 21.69452046334547 28.249813873479734 28.163098686900568 21.89256697627423 78-79 21.650483930066823 28.1683467966414 28.13800796124511 22.043161312046664 80-81 21.668979832553124 28.282423253514356 28.127963247221814 21.920633666710707 82-83 21.77964749980062 28.237987135310245 28.116174088567806 21.866191276321327 84-85 21.79262583096279 28.24115338430787 28.08626281583844 21.879957968890896 86-87 21.750452350781117 28.252423005575245 28.142485387818166 21.854639255825475 88-89 21.837335742159354 28.23139311227731 28.02840423140079 21.90286691416255 90-91 21.835445657603138 28.29888510827046 28.034333796350918 21.831335437775483 92-93 21.848521710300513 28.247658178048514 28.043354350582188 21.860465761068788 94-95 21.771555845151205 28.264098111757267 28.065602096809318 21.89874394628221 96-97 21.927795854839637 28.35335952556119 28.057593526632107 21.661251092967067 98-99 22.987463968819696 30.237652552768772 28.307836020637584 18.46704745777395 100 21.99089051044849 31.097312143558014 22.121936902002286 24.78986044399121 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2806.0 1 2376.5 2 2771.0 3 3819.0 4 5088.0 5 8373.0 6 11242.5 7 13393.5 8 15111.0 9 15125.5 10 13870.0 11 12329.5 12 13122.0 13 17456.5 14 27778.5 15 42365.5 16 54895.0 17 62625.5 18 64127.5 19 59944.5 20 53049.0 21 45738.5 22 40539.0 23 40730.0 24 46336.0 25 56872.5 26 71464.0 27 88290.0 28 106503.5 29 126721.0 30 146852.5 31 165969.5 32 186944.5 33 208088.0 34 227997.0 35 246579.0 36 267705.0 37 287713.5 38 303295.5 39 317152.0 40 330187.0 41 340388.0 42 345219.5 43 351644.5 44 358450.0 45 363705.5 46 364669.5 47 360114.5 48 354669.5 49 343821.5 50 328155.5 51 309451.5 52 287095.0 53 261069.5 54 231709.0 55 203384.0 56 176982.0 57 151426.5 58 129425.0 59 109367.5 60 89848.5 61 72744.5 62 56641.0 63 42934.0 64 32094.5 65 23673.0 66 17925.5 67 13760.0 68 10513.0 69 7717.0 70 5578.5 71 4166.0 72 3049.0 73 2196.5 74 1532.0 75 1036.5 76 714.0 77 472.0 78 312.5 79 222.5 80 161.5 81 119.5 82 89.0 83 60.0 84 37.0 85 27.0 86 19.5 87 12.0 88 7.0 89 4.0 90 2.5 91 1.0 92 0.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.1107844668723624E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.00754622577132998 14-15 4.404411928791817E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 5.2868364293341176E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0029526907486943053 36-37 0.032366115169850766 38-39 0.1404949001728638 40-41 0.19100459483083318 42-43 0.05947562285971642 44-45 0.007605024029170588 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 1.8813678422184588E-5 62-63 0.012763490687888426 64-65 0.07615912124872506 66-67 0.2056401239564886 68-69 0.2225960546714775 70-71 0.08738238396951067 72-73 0.005766792363451793 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 123.0 20-21 611.0 22-23 1218.0 24-25 2291.0 26-27 3549.0 28-29 6087.0 30-31 12957.0 32-33 15740.0 34-35 20605.0 36-37 23129.0 38-39 25241.0 40-41 33499.0 42-43 39937.0 44-45 50931.0 46-47 52171.0 48-49 42506.0 50-51 37496.0 52-53 35274.0 54-55 44259.0 56-57 41837.0 58-59 41341.0 60-61 46611.0 62-63 49969.0 64-65 59335.0 66-67 70635.0 68-69 68625.0 70-71 68349.0 72-73 64783.0 74-75 67208.0 76-77 61425.0 78-79 67348.0 80-81 68949.0 82-83 72424.0 84-85 76947.0 86-87 82587.0 88-89 88834.0 90-91 93585.0 92-93 92951.0 94-95 109923.0 96-97 292974.0 98-99 545351.0 100-101 5834575.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.19752228297092 #Duplication Level Percentage of deduplicated Percentage of total 1 89.3728518420575 76.14345536306352 2 7.568040110697553 12.89556531939145 3 1.7777646611450661 4.543834329953551 4 0.616278997661886 2.1002177454330204 5 0.2708484987266537 1.153781050278665 6 0.1412907435662933 0.7222572764020082 7 0.07732112275247144 0.46112976550536106 8 0.04666337683045268 0.31804832698489294 9 0.030001372143544272 0.23004383145473847 >10 0.09661610089684994 1.2430263226576965 >50 0.001783621704664765 0.10248291848331738 >100 5.176935466778084E-4 0.07401574687619396 >500 2.1858270380798703E-5 0.012142003515486163 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.8725492383890894E-5 0.0 0.0 0.0 3 0.0 7.047059086066908E-5 0.0 0.0 0.0 4 0.0 1.057058862910036E-4 0.0 0.0 0.0 5 0.0 1.057058862910036E-4 0.0 0.0 0.0 6 0.0 1.057058862910036E-4 0.0 0.0 1.1745098476778178E-5 7 0.0 1.1745098476778179E-4 0.0 0.0 1.1745098476778178E-5 8 0.0 1.2919608324455997E-4 0.0 0.0 2.3490196953556356E-5 9 1.1745098476778178E-5 2.3490196953556357E-4 0.0 1.1745098476778178E-5 3.523529543033454E-5 10-11 1.7617647715167265E-5 2.3490196953556357E-4 0.0 1.1745098476778178E-5 3.523529543033454E-5 12-13 3.523529543033454E-5 2.3490196953556357E-4 0.0 2.3490196953556356E-5 4.110784466872362E-5 14-15 3.523529543033454E-5 3.5822550354173445E-4 0.0 2.3490196953556356E-5 9.983333705261452E-5 16-17 4.110784466872362E-5 3.640980527801235E-4 0.0 2.3490196953556356E-5 1.1745098476778179E-4 18-19 5.28529431455018E-5 3.758431512569017E-4 0.0 3.523529543033454E-5 1.2332353400617088E-4 20-21 5.8725492383890894E-5 4.1107844668723624E-4 0.0 3.523529543033454E-5 1.2919608324455997E-4 22-23 5.8725492383890894E-5 4.6393138983273803E-4 0.0 3.523529543033454E-5 1.4094118172133815E-4 24-25 5.8725492383890894E-5 5.402745299317962E-4 0.0 4.698039390711271E-5 1.5268628019811633E-4 26-27 5.8725492383890894E-5 5.637647268853526E-4 0.0 7.047059086066908E-5 1.644313786748945E-4 28-29 5.8725492383890894E-5 5.696372761237417E-4 0.0 3.112451096346217E-4 1.644313786748945E-4 30-31 5.8725492383890894E-5 6.459804162227998E-4 0.0 0.001250852987776876 1.644313786748945E-4 32-33 5.8725492383890894E-5 6.459804162227998E-4 0.0 0.00303023540700877 2.114117725820072E-4 34-35 7.634314009905815E-5 7.399412040370253E-4 0.0 0.004803745277002275 2.114117725820072E-4 36-37 9.396078781422542E-5 8.339019918512507E-4 0.0 0.007499245377422867 2.172843218203963E-4 38-39 1.057058862910036E-4 8.51519639566418E-4 0.0 0.01380636325945275 2.231568710587854E-4 40-41 1.5855882943650542E-4 9.86588272049367E-4 0.0 0.020142843887674577 2.231568710587854E-4 42-43 1.644313786748945E-4 0.0010100784690029235 0.0 0.024611853858088673 2.231568710587854E-4 44-45 1.644313786748945E-4 0.001104039256817149 0.0 0.02965050110462651 2.231568710587854E-4 46-47 1.703039279132836E-4 0.001174509847677818 0.0 0.035094354248613194 2.231568710587854E-4 48-49 1.9966667410522903E-4 0.001186254946154596 0.0 0.04156590350931798 2.231568710587854E-4 50-51 2.3490196953556357E-4 0.0013448137755911016 0.0 0.047978727277638855 2.231568710587854E-4 52-53 2.3490196953556357E-4 0.0013506863248294906 0.0 0.06674739464353038 2.4077451877395267E-4 54-55 2.3490196953556357E-4 0.0013565588740678796 0.0 0.09149431713410201 2.64264715727509E-4 56-57 2.3490196953556357E-4 0.0013976667187366033 0.0 0.11943003386111892 2.8775491268106536E-4 58-59 2.3490196953556357E-4 0.0014035392679749923 0.0 0.13426409323728974 3.0537256039623266E-4 60-61 2.3490196953556357E-4 0.0014446471126437158 0.0 0.14543955443794418 3.0537256039623266E-4 62-63 2.5839216648911994E-4 0.0014798824080740505 0.0 0.15774254509236932 3.0537256039623266E-4 64-65 2.8775491268106536E-4 0.0016208235897953887 0.0 0.1621175942749692 3.0537256039623266E-4 66-67 3.0537256039623266E-4 0.001638441237510556 0.0 0.16773762389610755 3.0537256039623266E-4 68-69 3.0537256039623266E-4 0.0016795490821792797 0.0 0.1741152123689981 3.112451096346217E-4 70-71 3.0537256039623266E-4 0.0016912941806560577 0.0 0.17911275177086722 3.347353065881781E-4 72-73 3.0537256039623266E-4 0.0016912941806560577 0.0 0.18256581072304 3.640980527801235E-4 74-75 3.0537256039623266E-4 0.0017324020253247814 0.0 0.18536114416051322 3.640980527801235E-4 76-77 3.1711765887301084E-4 0.0018028726161854504 0.0 0.18809775210560253 3.640980527801235E-4 78-79 3.1711765887301084E-4 0.0018322353623773959 0.0 0.18959525216139173 3.640980527801235E-4 80-81 3.1711765887301084E-4 0.0018381079116157849 0.0 0.1901531443390387 3.699706020185126E-4 82-83 3.1711765887301084E-4 0.001843980460854174 0.0 0.19052311494105723 3.758431512569017E-4 84-85 3.1711765887301084E-4 0.0018557255593309521 0.0 0.19072865416440082 3.758431512569017E-4 86-87 3.1711765887301084E-4 0.0018792157562845086 0.0 0.1908637227968838 3.758431512569017E-4 88 3.1711765887301084E-4 0.001973176544098734 0.0 0.1908695953461222 3.758431512569017E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12185 0.0 50.825912 1 GTATCAA 23215 0.0 40.015965 1 TCAACGC 28385 0.0 32.189552 4 ATCAACG 28500 0.0 32.074966 3 CAACGCA 29025 0.0 31.434696 5 TATCAAC 29365 0.0 31.278847 2 AACGCAG 29770 0.0 30.708443 6 GTGGTAT 6315 0.0 26.865728 1 ACGCAGA 34205 0.0 26.742382 7 TGGTATC 6000 0.0 26.677011 2 CGCAGAG 34665 0.0 26.387823 8 GCAGAGT 39435 0.0 23.173866 9 GTACATG 25490 0.0 21.473175 1 TACATGG 25420 0.0 20.914648 2 GAGTACT 25975 0.0 20.495844 12-13 ACATGGG 25545 0.0 20.163403 3 AGAGTAC 36540 0.0 19.631868 10-11 CAGAGTA 39055 0.0 19.411963 10-11 GTACTTT 28835 0.0 18.430546 14-15 AGTACTT 28420 0.0 17.857714 12-13 >>END_MODULE