##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140269_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6833332 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.63692968525457 33.0 33.0 33.0 33.0 33.0 2 32.67367647291248 33.0 33.0 33.0 33.0 33.0 3 32.707640430759106 33.0 33.0 33.0 33.0 33.0 4 36.643204808430205 37.0 37.0 37.0 37.0 37.0 5 36.657017103808215 37.0 37.0 37.0 37.0 37.0 6 36.63670022179517 37.0 37.0 37.0 37.0 37.0 7 36.61783563274842 37.0 37.0 37.0 37.0 37.0 8 36.60122426365351 37.0 37.0 37.0 37.0 37.0 9 36.629205049600984 37.0 37.0 37.0 37.0 37.0 10-11 36.60965916773837 37.0 37.0 37.0 37.0 37.0 12-13 36.604239630095535 37.0 37.0 37.0 37.0 37.0 14-15 38.72016975027702 40.0 37.0 40.0 37.0 40.0 16-17 38.66516020295809 40.0 37.0 40.0 37.0 40.0 18-19 38.704166137398275 40.0 37.0 40.0 37.0 40.0 20-21 38.7213488557167 40.0 37.0 40.0 37.0 40.0 22-23 38.71241613043595 40.0 37.0 40.0 37.0 40.0 24-25 38.71490792664855 40.0 37.0 40.0 37.0 40.0 26-27 38.64577051754039 40.0 37.0 40.0 37.0 40.0 28-29 38.543667088043605 40.0 37.0 40.0 37.0 40.0 30-31 38.405954968401744 40.0 37.0 40.0 37.0 40.0 32-33 38.292417036259295 40.0 37.0 40.0 37.0 40.0 34-35 38.2501796472947 40.0 37.0 40.0 37.0 40.0 36-37 38.22843187949874 40.0 37.0 40.0 37.0 40.0 38-39 38.189325142192054 40.0 37.0 40.0 37.0 40.0 40-41 38.158199352263324 40.0 37.0 40.0 37.0 40.0 42-43 38.11992615169497 40.0 37.0 40.0 37.0 40.0 44-45 38.022520011362204 40.0 37.0 40.0 33.0 40.0 46-47 37.94140237326967 40.0 37.0 40.0 33.0 40.0 48-49 37.87828202409154 40.0 37.0 40.0 33.0 40.0 50-51 37.854443269513396 40.0 37.0 40.0 33.0 40.0 52-53 37.81631677978173 40.0 37.0 40.0 33.0 40.0 54-55 37.72304293429599 40.0 37.0 40.0 33.0 40.0 56-57 37.56684450533626 40.0 37.0 40.0 33.0 40.0 58-59 37.361216277611724 40.0 37.0 40.0 33.0 40.0 60-61 37.21961956673344 37.0 37.0 40.0 33.0 40.0 62-63 37.104295989348955 37.0 37.0 40.0 33.0 40.0 64-65 36.93972253760714 37.0 37.0 40.0 33.0 40.0 66-67 36.7275080547542 37.0 37.0 40.0 33.0 40.0 68-69 36.52630357718003 37.0 37.0 40.0 33.0 40.0 70-71 36.30182042574833 37.0 37.0 40.0 33.0 40.0 72-73 36.00385590286723 37.0 37.0 37.0 33.0 40.0 74-75 35.663047888709656 37.0 35.0 37.0 33.0 40.0 76-77 33.42550442736865 35.0 33.0 37.0 27.0 37.0 78-79 35.153136684982954 37.0 33.0 37.0 33.0 37.0 80-81 35.37080022580202 37.0 33.0 37.0 33.0 37.0 82-83 35.216025647008586 37.0 33.0 37.0 33.0 37.0 84-85 35.038193914429606 37.0 33.0 37.0 33.0 37.0 86-87 34.913886920721325 37.0 33.0 37.0 33.0 37.0 88-89 34.801897063513614 37.0 33.0 37.0 33.0 37.0 90-91 34.726458071587416 37.0 33.0 37.0 33.0 37.0 92-93 34.644383150377735 37.0 33.0 37.0 33.0 37.0 94-95 34.63587913066061 37.0 33.0 37.0 33.0 37.0 96-97 34.66699602124533 37.0 33.0 37.0 33.0 37.0 98-99 34.675351461290326 37.0 33.0 37.0 33.0 37.0 100 34.60279173149972 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 4.0 19 9.0 20 41.0 21 168.0 22 619.0 23 1735.0 24 4443.0 25 9316.0 26 16759.0 27 27405.0 28 41938.0 29 60359.0 30 83807.0 31 115075.0 32 155152.0 33 212905.0 34 300041.0 35 448633.0 36 804913.0 37 2010706.0 38 2476280.0 39 63022.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.31340922896901 20.657714370926858 15.33130767410506 22.697568725999076 2 14.040221497309282 20.87370236771018 43.20391681280129 21.88215932217925 3 17.928942707443852 26.491165143324686 30.83595687081454 24.743935278416924 4 12.037423622534895 18.369020906494942 39.98379414080775 29.609761330162403 5 12.872726346784608 37.762900699527066 35.97236838080872 13.392004572879609 6 28.654897589477223 38.663866860832584 19.19503094464471 13.486204605045474 7 25.645922077253086 33.30394308369621 23.535868006998637 17.514266832052066 8 23.52098507726538 37.349056068108496 21.35773587468017 17.772222979945948 9 24.85171216618774 17.742061998451124 22.20480433264475 35.20142150271639 10-11 23.46653872517829 27.468846823189626 29.12824226892532 19.93637218270677 12-13 24.428843278162134 24.957336444785447 29.65889279283927 20.954927484213147 14-15 21.49855223726392 26.384447811614354 27.832678842527375 24.28432110859435 16-17 20.45423082033772 29.628305781132834 28.479532386250224 21.437931012279222 18-19 20.392935686426476 28.339520163808814 30.986501168097792 20.28104298166692 20-21 21.148683534255973 27.402656815076632 31.22416269875185 20.224496951915548 22-23 20.843200162635743 27.281860165315603 31.146244613843667 20.728695058204995 24-25 20.612375199886227 27.457997633900437 31.185764580047337 20.743862586165996 26-27 20.589446856691996 27.62289148810576 31.080646713065192 20.707014942137057 28-29 20.52645656354965 27.74988826081819 31.037280264285418 20.686374911346743 30-31 20.774166369759243 27.613739990650533 30.96794558592657 20.644148053663653 32-33 20.587810170827677 27.772594337851412 30.846516690403043 20.793078800917865 34-35 20.670165293816098 27.889547867965607 30.80479547793564 20.63549136028265 36-37 20.683448544172755 27.82581093890532 30.727951692391827 20.762788824530094 38-39 20.600793862712834 27.985703754852054 30.72723150000171 20.686270882433398 40-41 20.885472178542923 27.911685035870132 30.466924082455897 20.73591870313105 42-43 20.798025685387728 28.07863344799698 30.15453894806312 20.968801918552167 44-45 20.947965042819884 28.227511852094565 29.86532864851663 20.95919445656892 46-47 21.03081020385011 28.25658813641404 29.47459131779806 21.23801034193779 48-49 21.03884138289218 28.43640811589494 29.2576480347163 21.267102466496578 50-51 21.11005019914623 28.572808200755695 29.057413235725647 21.259728364372428 52-53 21.239268729878017 28.503506526236254 28.941080041563676 21.316144702322052 54-55 21.21435048508861 28.418595918231617 28.98846582247189 21.378587774207883 56-57 21.222703233633933 28.528711078791186 28.896713214936355 21.35187247263853 58-59 21.19070895755229 28.55025383708983 28.889793594315087 21.36924361104279 60-61 21.262281600300128 28.500406876817387 28.93590807348101 21.301403449401477 62-63 21.251911702918978 28.60407153666418 28.84430696256239 21.29970979785446 64-65 21.275311862859574 28.483354700745974 28.812980660775224 21.428352775619228 66-67 21.340241104556952 28.498849284073195 28.667302169888874 21.49360744148097 68-69 21.26323961625908 28.520321796870345 28.693666549597342 21.52277203727323 70-71 21.360082623921816 28.270494383234794 28.755046086236153 21.614376906607234 72-73 21.442909800668637 28.30671484893345 28.668457075140292 21.581918275257625 74-75 21.272608982248915 28.449745809597253 28.6346940959547 21.64295111219913 76-77 21.4580538683464 28.343028516766207 28.541594350134503 21.65732326475289 78-79 21.39268048966266 28.275265459525723 28.557810473528217 21.7742435772834 80-81 21.419450168129632 28.348911940355 28.528806031750165 21.702831859765208 82-83 21.548205356818865 28.240369662392684 28.599669868461664 21.61175511232678 84-85 21.625745115758463 28.207382505359597 28.541048216232245 21.625824162649693 86-87 21.467568772201957 28.26905474834428 28.56212926827774 21.701247211176014 88-89 21.612929704556425 28.164670813022603 28.51667160907696 21.705727873344017 90-91 21.69666598718963 28.138854179770707 28.508236817122167 21.6562430159175 92-93 21.69870501522942 28.07869269011707 28.518717266604938 21.70388502804857 94-95 21.58827577909515 28.138967124923496 28.525721741430754 21.747035354550597 96-97 21.710134242269127 28.205646913900097 28.541504625045917 21.542714218784866 98-99 22.811377197468424 30.082807361696645 28.804687027504944 18.30112841332998 100 21.83421339534306 31.00435315873547 22.615746411037545 24.545687034883922 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1591.0 1 1426.5 2 2143.0 3 3263.5 4 4553.0 5 7788.0 6 10743.5 7 12923.5 8 14820.5 9 14991.5 10 13419.5 11 11672.5 12 12392.0 13 16763.5 14 27315.0 15 42098.5 16 55046.0 17 63224.0 18 64590.5 19 60312.5 20 53402.5 21 46112.0 22 40806.0 23 39912.5 24 44415.0 25 53200.0 26 65051.5 27 78896.0 28 93585.0 29 110050.0 30 126041.0 31 141311.5 32 158642.0 33 175762.5 34 192932.0 35 208995.0 36 225746.0 37 241749.5 38 253410.5 39 262819.0 40 272968.0 41 280650.0 42 283437.5 43 287607.5 44 291503.5 45 294635.5 46 293821.0 47 287687.5 48 281428.5 49 272561.0 50 260004.5 51 243229.5 52 221693.0 53 196937.5 54 172964.5 55 150984.0 56 129803.5 57 110319.0 58 93137.5 59 78560.5 60 64361.0 61 51344.0 62 40113.0 63 30205.0 64 22170.5 65 16325.0 66 12468.0 67 9574.0 68 7374.0 69 5483.0 70 4010.0 71 3051.5 72 2178.5 73 1522.0 74 1101.0 75 746.0 76 518.0 77 349.5 78 230.5 79 165.0 80 126.5 81 95.0 82 71.0 83 49.0 84 33.0 85 20.0 86 11.5 87 10.5 88 10.5 89 9.0 90 6.5 91 5.0 92 4.5 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.463414919690716E-5 2 3.073171331350504E-4 3 1.463414919690716E-5 4 1.463414919690716E-5 5 1.463414919690716E-5 6 1.463414919690716E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.007456099015824199 14-15 4.390244759072148E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 4.3908118164649446E-5 24-25 5.1236430214444956E-5 26-27 0.0 28-29 7.325957949587447E-6 30-31 1.4668129176933135E-5 32-33 1.4696685037767908E-5 34-35 0.002968595792313797 36-37 0.03212348898778421 38-39 0.1398141929100516 40-41 0.19015299523205023 42-43 0.05950853121832095 44-45 0.007140671762663112 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.01280127877868412 64-65 0.07773612893931586 66-67 0.20382235197596793 68-69 0.22100564330422004 70-71 0.08884497481926575 72-73 0.005786473459597408 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 100.0 20-21 545.0 22-23 1112.0 24-25 2068.0 26-27 3220.0 28-29 5905.0 30-31 12436.0 32-33 15627.0 34-35 20223.0 36-37 25712.0 38-39 29773.0 40-41 37580.0 42-43 47479.0 44-45 58479.0 46-47 59963.0 48-49 47271.0 50-51 39841.0 52-53 40615.0 54-55 39516.0 56-57 38201.0 58-59 39284.0 60-61 36444.0 62-63 26268.0 64-65 41631.0 66-67 51906.0 68-69 50548.0 70-71 52467.0 72-73 49434.0 74-75 49909.0 76-77 45796.0 78-79 51105.0 80-81 54226.0 82-83 51343.0 84-85 59174.0 86-87 64009.0 88-89 68758.0 90-91 73289.0 92-93 71311.0 94-95 79375.0 96-97 223228.0 98-99 430609.0 100-101 4637552.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.76106549500236 #Duplication Level Percentage of deduplicated Percentage of total 1 88.71865949801595 74.31169448842128 2 7.817717453132446 13.096406872264998 3 1.9374456539803833 4.868475369481756 4 0.7076080328076135 2.370800111231532 5 0.31567692474830544 1.3220717784551872 6 0.16684276394398498 0.8384956606847608 7 0.10170505320917173 0.5963246536118293 8 0.06304904863706577 0.4224844393829485 9 0.039211805227018615 0.2955980327217824 >10 0.12911427526517535 1.618832716265871 >50 0.00216149051131036 0.11805029222772785 >100 7.499921713236107E-4 0.11204983940768344 >500 5.8008350273459635E-5 0.028715745842691733 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.390244759072148E-5 0.0 0.0 0.0 3 0.0 4.390244759072148E-5 0.0 0.0 0.0 4 0.0 1.0243904437835013E-4 0.0 0.0 0.0 5 0.0 1.0243904437835013E-4 0.0 1.463414919690716E-5 0.0 6 0.0 1.0243904437835013E-4 0.0 1.463414919690716E-5 0.0 7 0.0 1.0243904437835013E-4 0.0 1.463414919690716E-5 0.0 8 0.0 1.3170734277216444E-4 0.0 2.926829839381432E-5 0.0 9 0.0 2.7804883474123607E-4 0.0 7.31707459845358E-5 1.463414919690716E-5 10-11 0.0 2.7804883474123607E-4 0.0 1.0243904437835013E-4 1.463414919690716E-5 12-13 0.0 2.7804883474123607E-4 0.0 1.3170734277216444E-4 1.463414919690716E-5 14-15 0.0 3.5121958072577183E-4 0.0 1.463414919690716E-4 1.463414919690716E-5 16-17 0.0 3.5853665532422545E-4 0.0 1.463414919690716E-4 1.463414919690716E-5 18-19 0.0 3.8048787911958615E-4 0.0 1.6829271576443232E-4 1.463414919690716E-5 20-21 7.31707459845358E-6 3.9512202831649333E-4 0.0 1.829268649613395E-4 2.926829839381432E-5 22-23 1.463414919690716E-5 4.609756997025756E-4 0.0 1.9756101415824667E-4 5.853659678762864E-5 24-25 1.463414919690716E-5 5.195122964902042E-4 0.0 2.3414638715051457E-4 7.31707459845358E-5 26-27 1.463414919690716E-5 5.634147440809257E-4 0.0 2.560976109458753E-4 7.31707459845358E-5 28-29 2.1951223795360743E-5 5.707318186793793E-4 0.0 3.512195807257719E-4 7.31707459845358E-5 30-31 2.926829839381432E-5 6.000001170731935E-4 0.0 6.365854900654615E-4 7.31707459845358E-5 32-33 2.926829839381432E-5 6.292684154670079E-4 0.0 0.0011780490103510265 1.1707319357525729E-4 34-35 2.926829839381432E-5 6.878050122546365E-4 0.0 0.0019975613653778275 1.1707319357525729E-4 36-37 2.926829839381432E-5 7.463416090422652E-4 0.0 0.0030878054805474108 1.1707319357525729E-4 38-39 2.926829839381432E-5 7.756099074360795E-4 0.0 0.004507317952647406 1.1707319357525729E-4 40-41 2.926829839381432E-5 8.634148026175224E-4 0.0 0.006043903618322657 1.3170734277216444E-4 42-43 2.926829839381432E-5 8.634148026175224E-4 0.0 0.00793170886472368 1.3170734277216444E-4 44-45 2.926829839381432E-5 9.000001756097904E-4 0.0 0.010580489869363878 1.3170734277216444E-4 46-47 2.926829839381432E-5 9.365855486020583E-4 0.0 0.01344878311195768 1.3170734277216444E-4 48-49 2.926829839381432E-5 9.365855486020583E-4 0.0 0.01637561295133911 1.3170734277216444E-4 50-51 2.926829839381432E-5 0.0010170733691850478 0.0 0.019265857417728276 1.39024417370618E-4 52-53 2.926829839381432E-5 0.0010243904437835013 0.0 0.022726833702796823 1.6829271576443232E-4 54-55 3.65853729922679E-5 0.0010317075183819547 0.0 0.02573415136276124 1.9756101415824667E-4 56-57 4.390244759072148E-5 0.0010682928913742227 0.0 0.028763420246521024 2.0487808875670026E-4 58-59 4.390244759072148E-5 0.0010682928913742227 0.0 0.03191707939845452 2.1219516335515382E-4 60-61 4.390244759072148E-5 0.0010756099659726764 0.0 0.035195128818561724 2.1951223795360742E-4 62-63 4.390244759072148E-5 0.001097561189768037 0.0 0.037500007317074605 2.1951223795360742E-4 64-65 4.390244759072148E-5 0.0012146343833432944 0.0 0.039929276083761185 2.1951223795360742E-4 66-67 4.390244759072148E-5 0.0012292685325402015 0.0 0.04335366699583747 2.26829312552061E-4 68-69 4.390244759072148E-5 0.0012512197563355624 0.0 0.047634155635932804 2.3414638715051457E-4 70-71 4.390244759072148E-5 0.0012585368309340158 0.0 0.051702449112672993 2.487805363474217E-4 72-73 4.390244759072148E-5 0.001273170980130923 0.0 0.054775620444023496 2.487805363474217E-4 74-75 4.390244759072148E-5 0.001324390502320098 0.0 0.057475620970852875 2.487805363474217E-4 76-77 4.390244759072148E-5 0.0013536588007139125 0.0 0.059978060483524 2.487805363474217E-4 78-79 4.390244759072148E-5 0.001375610024509273 0.0 0.06164635349197141 2.487805363474217E-4 80-81 4.390244759072148E-5 0.001375610024509273 0.0 0.062202451161453884 2.487805363474217E-4 82-83 4.390244759072148E-5 0.001375610024509273 0.0 0.06266342686115646 2.634146855443289E-4 84-85 4.390244759072148E-5 0.0014268295466984481 0.0 0.06289757324830697 2.634146855443289E-4 86-87 4.390244759072148E-5 0.0014341466212969018 0.0 0.06299269521808687 2.634146855443289E-4 88 4.390244759072148E-5 0.0015219515164783446 0.0 0.06300001229268533 2.634146855443289E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11990 0.0 50.822147 1 GTATCAA 22600 0.0 39.402645 1 TCAACGC 27815 0.0 31.549307 4 ATCAACG 27900 0.0 31.453188 3 CAACGCA 28325 0.0 30.996496 5 TATCAAC 28575 0.0 30.936897 2 AACGCAG 28600 0.0 30.760206 6 ACGCAGA 32545 0.0 26.981035 7 CGCAGAG 32910 0.0 26.655743 8 GTGGTAT 5650 0.0 26.599651 1 TGGTATC 5515 0.0 25.841255 2 GCAGAGT 36735 0.0 23.680351 9 GAGTACT 25980 0.0 21.221733 12-13 CAGAGTA 36755 0.0 19.99513 10-11 GTACATG 20885 0.0 19.871656 1 AGAGTAC 34705 0.0 19.545853 10-11 GTACTTT 28165 0.0 19.496922 14-15 TACATGG 20925 0.0 19.462175 2 ACATGGG 20245 0.0 19.283941 3 AGTACTT 27435 0.0 18.860407 12-13 >>END_MODULE