##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140268_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6211486 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.585513836785594 33.0 33.0 33.0 33.0 33.0 2 32.63234304963418 33.0 33.0 33.0 33.0 33.0 3 32.66498419218847 33.0 33.0 33.0 33.0 33.0 4 36.58637691528243 37.0 37.0 37.0 37.0 37.0 5 36.59760128252724 37.0 37.0 37.0 37.0 37.0 6 36.57538131777162 37.0 37.0 37.0 37.0 37.0 7 36.552923728718056 37.0 37.0 37.0 37.0 37.0 8 36.53672728232826 37.0 37.0 37.0 37.0 37.0 9 36.57193576545129 37.0 37.0 37.0 37.0 37.0 10-11 36.54846609973845 37.0 37.0 37.0 37.0 37.0 12-13 36.543148773095524 37.0 37.0 37.0 37.0 37.0 14-15 38.59125626299407 40.0 37.0 40.0 37.0 40.0 16-17 38.51880105662317 40.0 37.0 40.0 37.0 40.0 18-19 38.563781275527305 40.0 37.0 40.0 37.0 40.0 20-21 38.588586026978334 40.0 37.0 40.0 37.0 40.0 22-23 38.57365453661147 40.0 37.0 40.0 37.0 40.0 24-25 38.572973290404754 40.0 37.0 40.0 37.0 40.0 26-27 38.49719371282211 40.0 37.0 40.0 37.0 40.0 28-29 38.3787179071074 40.0 37.0 40.0 37.0 40.0 30-31 38.249355234775834 40.0 37.0 40.0 37.0 40.0 32-33 38.118917689189615 40.0 37.0 40.0 35.0 40.0 34-35 38.05254393889629 40.0 37.0 40.0 35.0 40.0 36-37 38.04055787974873 40.0 37.0 40.0 33.0 40.0 38-39 37.986166491652185 40.0 37.0 40.0 33.0 40.0 40-41 37.976429779736975 40.0 37.0 40.0 33.0 40.0 42-43 37.94248332909372 40.0 37.0 40.0 33.0 40.0 44-45 37.84537101366978 40.0 37.0 40.0 33.0 40.0 46-47 37.76681197606675 40.0 37.0 40.0 33.0 40.0 48-49 37.71956524691166 40.0 37.0 40.0 33.0 40.0 50-51 37.6643818954757 40.0 37.0 40.0 33.0 40.0 52-53 37.6467360759644 40.0 37.0 40.0 33.0 40.0 54-55 37.532918900915085 40.0 37.0 40.0 33.0 40.0 56-57 37.37360829128487 40.0 37.0 40.0 33.0 40.0 58-59 37.17711821334271 38.5 37.0 40.0 33.0 40.0 60-61 37.025517551726296 37.0 37.0 40.0 33.0 40.0 62-63 36.9302894089773 37.0 37.0 40.0 33.0 40.0 64-65 36.796076304950404 37.0 37.0 40.0 33.0 40.0 66-67 36.59667337624822 37.0 37.0 40.0 33.0 40.0 68-69 36.40484087931799 37.0 37.0 40.0 33.0 40.0 70-71 36.18542278444049 37.0 37.0 40.0 33.0 40.0 72-73 35.892186465433355 37.0 37.0 37.0 33.0 40.0 74-75 35.55332577858324 37.0 33.0 37.0 33.0 40.0 76-77 33.33114002740898 35.0 33.0 37.0 27.0 37.0 78-79 35.06666393385437 37.0 33.0 37.0 33.0 37.0 80-81 35.28706746181095 37.0 33.0 37.0 33.0 37.0 82-83 35.13353902130909 37.0 33.0 37.0 33.0 37.0 84-85 34.95628574304696 37.0 33.0 37.0 33.0 37.0 86-87 34.82878897299086 37.0 33.0 37.0 33.0 37.0 88-89 34.71905193612605 37.0 33.0 37.0 33.0 37.0 90-91 34.642417002614295 37.0 33.0 37.0 33.0 37.0 92-93 34.562799358126995 37.0 33.0 37.0 33.0 37.0 94-95 34.55396767935399 37.0 33.0 37.0 33.0 37.0 96-97 34.59351266067986 37.0 33.0 37.0 33.0 37.0 98-99 34.60333879833065 37.0 33.0 37.0 33.0 37.0 100 34.531067994344234 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 3.0 20 36.0 21 199.0 22 759.0 23 2233.0 24 5240.0 25 10847.0 26 19004.0 27 30288.0 28 44692.0 29 63625.0 30 86680.0 31 117176.0 32 155463.0 33 210628.0 34 293107.0 35 430924.0 36 757013.0 37 1814984.0 38 2118939.0 39 49642.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.08180973119798 20.98860079536523 15.542126312447618 23.387463160989174 2 13.690708192484827 20.6066173481569 43.5375831869507 22.16509127240757 3 17.63198049548852 26.520191786635277 31.478071430894317 24.369756286981893 4 11.77581338829388 18.860382201618098 38.97548831310254 30.38831609698549 5 12.662686513339963 37.554894271676694 36.13789035345165 13.644528861531684 6 28.351782488119593 38.47953613676341 18.99345824815511 14.175223126961889 7 25.05120352843104 33.4001235775143 22.863095883980098 18.68557701007456 8 23.378560299419497 37.25179449812814 21.51378913194041 17.85585607051195 9 23.99734942653014 17.803002373345123 21.662320417368726 36.537327782756016 10-11 23.146136045384306 27.267919464038076 28.939033268367666 20.64691122220995 12-13 24.29493444735675 24.618698710457355 29.285619925485435 21.800746916700458 14-15 21.55110133169228 26.29147828830834 26.999041690295716 25.158378689703664 16-17 20.812233980725388 29.944203367760952 27.609045564942107 21.634517086571556 18-19 20.63244608456012 28.075173959983168 30.225770451708335 21.066609503748378 20-21 21.03400462464505 26.978464609793058 30.360460693535764 21.62707007202613 22-23 20.934073493767265 27.470723406646552 30.40477902784667 21.190424071739518 24-25 21.041890169668623 27.698960047225412 30.40560404814113 20.853545734964836 26-27 20.655382901711253 27.729818277134417 30.669795454842035 20.945003366312292 28-29 20.199389646888775 27.276114858457355 31.115805156767216 21.40869033788665 30-31 20.69753854546452 27.157948847065732 30.444009212499175 21.700503394970568 32-33 21.045464305079932 27.28029750720053 30.959640254694243 20.714597933025296 34-35 20.87156087918037 27.997107577315422 30.680642979367285 20.450688564136925 36-37 20.589746769670665 27.590087715062484 30.3510043801752 21.469161135091653 38-39 20.71940411049433 27.37397940090328 30.621754529492968 21.284861959109417 40-41 20.78314174665196 27.349068527892616 30.709955978019938 21.157833747435486 42-43 20.97767330561913 27.366677124387245 30.619218968331353 21.03643060166227 44-45 20.64281295755511 27.75057685437603 30.276295668143216 21.330314519925647 46-47 21.428625099274218 27.408725763561932 29.349894978495477 21.812754158668373 48-49 21.118528843567358 27.509006039471924 29.562312318261363 21.81015279869935 50-51 20.907669984349216 27.960357870648 29.582080563325214 21.549891581677567 52-53 20.960782504095796 28.30789042320103 29.67803721451058 21.053289858192585 54-55 20.89696010307406 28.29456668492169 29.184917331243593 21.62355588076066 56-57 21.38708784055131 28.56714527495431 28.624312066242354 21.421454818252034 58-59 20.849735604256015 28.92815454065075 29.2728000977511 20.94930975734214 60-61 21.357615983263553 29.28516215768094 28.45184274623736 20.905379112818146 62-63 20.929289749365225 29.61684426631678 28.463883078437508 20.989982905880492 64-65 21.0428148540348 29.202776832150175 28.555214313101107 21.19919400071392 66-67 21.20872370579434 28.801837095083155 28.52402470445124 21.465414494671265 68-69 21.23086456177317 28.553133469811158 28.74104482026715 21.474957148148523 70-71 21.32833267178063 28.29867211521664 28.75878257474921 21.614212638253523 72-73 21.388787880670243 28.300808156006173 28.70609507217402 21.60430889114956 74-75 21.25849878206999 28.441030323519584 28.674368183757657 21.62610271065277 76-77 21.386361257759347 28.356244632363893 28.571066579755378 21.686327530121382 78-79 21.385378269650978 28.2439604188261 28.60087867489743 21.769782636625493 80-81 21.465050588297284 28.320802450168053 28.536528229961196 21.677618731573464 82-83 21.54523696768099 28.202490559132887 28.64919516813171 21.60307730505442 84-85 21.599660543941752 28.178099054113975 28.58957495229163 21.632665449652645 86-87 21.48651199227169 28.206232977630936 28.64132574573705 21.665929284360324 88-89 21.580523764570025 28.132795870678734 28.551060917846875 21.735619446904366 90-91 21.58583270713394 28.150769091192384 28.52619807540614 21.737200126267542 92-93 21.691358931880423 28.06785771090712 28.564268063061917 21.676515294150544 94-95 21.570091184478 28.121380775874314 28.58749583825837 21.721032201389313 96-97 21.658354125526742 28.23507233255021 28.622232079904464 21.484341462018584 98-99 22.72309157249085 30.106028244654446 28.88726265924812 18.28361752360658 100 21.76843268828646 30.93790974129858 22.664150370031813 24.62950720038315 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1435.0 1 1299.0 2 1804.5 3 2590.0 4 3592.0 5 6181.5 6 8516.5 7 10482.5 8 12275.0 9 12508.5 10 11209.5 11 9822.0 12 10435.0 13 13860.0 14 22621.5 15 35036.5 16 45684.5 17 52461.0 18 54267.5 19 51417.5 20 45693.5 21 39402.0 22 35152.5 23 34907.5 24 38929.5 25 47091.0 26 58068.5 27 70257.0 28 82777.5 29 96899.0 30 111600.5 31 125860.5 32 140553.0 33 154850.5 34 170293.5 35 184740.0 36 199525.0 37 213387.0 38 224478.5 39 233859.0 40 241599.0 41 248384.5 42 252527.0 43 257197.0 44 262448.0 45 266628.0 46 272339.5 47 280299.0 48 296667.0 49 296214.0 50 274985.0 51 258934.0 52 240743.0 53 211115.0 54 176759.0 55 148132.0 56 125354.0 57 106084.5 58 88384.5 59 72710.5 60 58748.5 61 46715.5 62 36237.5 63 27263.0 64 20118.5 65 14864.5 66 11290.5 67 8845.0 68 6872.5 69 5085.0 70 3611.5 71 2634.5 72 1928.5 73 1402.0 74 1035.5 75 716.0 76 496.5 77 330.5 78 210.5 79 144.5 80 99.0 81 76.0 82 65.0 83 44.0 84 26.5 85 18.5 86 12.5 87 10.0 88 7.5 89 4.5 90 3.5 91 2.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.024801794610823E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.007816165085134217 14-15 4.588274045856338E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 8.050705273984822E-6 24-25 4.831406850113574E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0027976278710554665 36-37 0.032121766404100124 38-39 0.13789840442250295 40-41 0.18812136874183832 42-43 0.05923636394981146 44-45 0.007348349380155444 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 2.694558581455024E-5 62-63 0.013659994477913197 64-65 0.0774589641426218 66-67 0.20374090684685434 68-69 0.22058231927627042 70-71 0.08998059316466041 72-73 0.006689190125417537 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 103.0 20-21 531.0 22-23 1000.0 24-25 2048.0 26-27 3517.0 28-29 5565.0 30-31 12366.0 32-33 15596.0 34-35 21708.0 36-37 29902.0 38-39 35917.0 40-41 39500.0 42-43 48377.0 44-45 58700.0 46-47 55844.0 48-49 48547.0 50-51 41885.0 52-53 40932.0 54-55 53381.0 56-57 59431.0 58-59 55529.0 60-61 58397.0 62-63 60204.0 64-65 63134.0 66-67 66862.0 68-69 47882.0 70-71 42314.0 72-73 40981.0 74-75 41685.0 76-77 39014.0 78-79 42727.0 80-81 43595.0 82-83 47580.0 84-85 47599.0 86-87 49948.0 88-89 56868.0 90-91 61189.0 92-93 61141.0 94-95 67604.0 96-97 195349.0 98-99 379681.0 100-101 4067353.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.70670761482965 #Duplication Level Percentage of deduplicated Percentage of total 1 90.49436695718418 78.46468616545671 2 6.903786328598336 11.972091652580685 3 1.5175852786465354 3.9475446910852483 4 0.5290205998362268 1.8347853788888608 5 0.22517179471289844 0.9761952483638866 6 0.11454650839237257 0.5959170366886247 7 0.06790336090300694 0.4121373801916895 8 0.04066745318212497 0.28209127780018267 9 0.024814114037915676 0.1936395117545935 >10 0.08003447290424709 1.0399357969700957 >50 0.0011753344762128535 0.06640167347620846 >100 8.141115362484256E-4 0.1514135178203171 >500 1.1368558964046751E-4 0.06316066892283326 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.609920717844329E-5 0.0 0.0 0.0 3 0.0 1.609920717844329E-5 0.0 1.609920717844329E-5 0.0 4 0.0 6.439682871377317E-5 0.0 1.609920717844329E-5 0.0 5 0.0 8.049603589221645E-5 0.0 1.609920717844329E-5 0.0 6 0.0 8.049603589221645E-5 0.0 1.609920717844329E-5 1.609920717844329E-5 7 0.0 8.049603589221645E-5 1.609920717844329E-5 1.609920717844329E-5 1.609920717844329E-5 8 0.0 9.659524307065974E-5 1.609920717844329E-5 3.219841435688658E-5 1.609920717844329E-5 9 0.0 1.4489286460598962E-4 1.609920717844329E-5 6.439682871377317E-5 1.609920717844329E-5 10-11 0.0 1.4489286460598962E-4 1.609920717844329E-5 1.046448466598814E-4 1.609920717844329E-5 12-13 0.0 1.4489286460598962E-4 1.609920717844329E-5 1.931904861413195E-4 1.609920717844329E-5 14-15 0.0 2.0928969331976277E-4 1.609920717844329E-5 2.0928969331976277E-4 1.609920717844329E-5 16-17 0.0 2.0928969331976277E-4 1.609920717844329E-5 2.2538890049820606E-4 1.609920717844329E-5 18-19 8.049603589221646E-6 2.2538890049820606E-4 1.609920717844329E-5 2.8978572921197924E-4 1.609920717844329E-5 20-21 1.609920717844329E-5 2.4148810767664935E-4 1.609920717844329E-5 3.380833507473091E-4 1.609920717844329E-5 22-23 1.609920717844329E-5 2.7368652203353596E-4 1.609920717844329E-5 3.62232161514974E-4 1.609920717844329E-5 24-25 1.609920717844329E-5 3.219841435688658E-4 1.609920717844329E-5 3.702817651041957E-4 1.609920717844329E-5 26-27 1.609920717844329E-5 3.380833507473091E-4 1.609920717844329E-5 4.668770081748554E-4 1.609920717844329E-5 28-29 1.609920717844329E-5 3.541825579257524E-4 1.609920717844329E-5 7.647123409760563E-4 1.609920717844329E-5 30-31 1.609920717844329E-5 4.1857938663952555E-4 1.609920717844329E-5 0.0013523334029892364 1.609920717844329E-5 32-33 3.219841435688658E-5 4.427281974071905E-4 1.609920717844329E-5 0.002511476319837153 1.609920717844329E-5 34-35 4.829762153532987E-5 5.232242332994069E-4 1.609920717844329E-5 0.003976504173075493 1.609920717844329E-5 36-37 4.829762153532987E-5 5.956706656024017E-4 1.609920717844329E-5 0.00626259159241444 1.609920717844329E-5 38-39 4.829762153532987E-5 5.956706656024017E-4 1.609920717844329E-5 0.009707821928601305 1.609920717844329E-5 40-41 6.439682871377317E-5 6.842163050838398E-4 1.609920717844329E-5 0.013161101868377389 1.609920717844329E-5 42-43 6.439682871377317E-5 7.003155122622831E-4 1.609920717844329E-5 0.016525836168672037 1.609920717844329E-5 44-45 6.439682871377317E-5 7.72761944565278E-4 1.609920717844329E-5 0.020824324485316396 1.609920717844329E-5 46-47 6.439682871377317E-5 8.371587732790511E-4 1.609920717844329E-5 0.026193410079327233 1.609920717844329E-5 48-49 6.439682871377317E-5 8.452083768682728E-4 1.609920717844329E-5 0.030701188089291356 1.609920717844329E-5 50-51 6.439682871377317E-5 9.659524307065974E-4 1.609920717844329E-5 0.0352170157028447 1.609920717844329E-5 52-53 6.439682871377317E-5 9.901012414742622E-4 1.609920717844329E-5 0.039555752037435166 1.609920717844329E-5 54-55 6.439682871377317E-5 0.0010222996558311489 1.609920717844329E-5 0.04358055383204598 1.609920717844329E-5 56-57 6.439682871377317E-5 0.0010786468809557005 1.609920717844329E-5 0.04752485959076459 1.609920717844329E-5 58-59 7.244643230299481E-5 0.0011027956917233654 1.609920717844329E-5 0.0516543062320353 1.609920717844329E-5 60-61 8.049603589221645E-5 0.0011430437096694736 1.609920717844329E-5 0.05593669534150121 2.414881076766494E-5 62-63 8.049603589221645E-5 0.0011430437096694736 1.609920717844329E-5 0.059961497136112034 3.219841435688658E-5 64-65 8.049603589221645E-5 0.0013201349886323497 1.609920717844329E-5 0.06335038024717435 3.219841435688658E-5 66-67 8.049603589221645E-5 0.001336234195810793 1.609920717844329E-5 0.06758447173510493 4.024801794610823E-5 68-69 8.049603589221645E-5 0.0014086806281137878 1.609920717844329E-5 0.0718507616373924 7.244643230299481E-5 70-71 8.049603589221645E-5 0.0014569782496491178 1.609920717844329E-5 0.07569042254945113 8.049603589221645E-5 72-73 8.85456394814381E-5 0.0014811270604167827 1.609920717844329E-5 0.07825824609441284 8.85456394814381E-5 74-75 9.659524307065974E-5 0.0015052758711844476 1.609920717844329E-5 0.0805845815316979 9.659524307065974E-5 76-77 9.659524307065974E-5 0.0015777223034874424 1.609920717844329E-5 0.0828223713295015 1.1269445024910303E-4 78-79 9.659524307065974E-5 0.001609920717844329 1.609920717844329E-5 0.08417470473249075 1.1269445024910303E-4 80-81 9.659524307065974E-5 0.0016179703214335506 1.609920717844329E-5 0.08453693689400571 1.1269445024910303E-4 82-83 9.659524307065974E-5 0.0016260199250227724 1.609920717844329E-5 0.08488306984834225 1.1269445024910303E-4 84-85 9.659524307065974E-5 0.0016260199250227724 1.609920717844329E-5 0.08511650835242968 1.1269445024910303E-4 86-87 9.659524307065974E-5 0.0016582183393796589 1.609920717844329E-5 0.0851970043883219 1.1269445024910303E-4 88 9.659524307065974E-5 0.001770912789628762 1.609920717844329E-5 0.0851970043883219 1.1269445024910303E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 8400 0.0 53.334286 1 GGTATCA 13220 0.0 40.602142 1 TATACAC 11950 0.0 40.261997 3 TTATACA 11365 0.0 39.980446 2 GTATCAA 22210 0.0 32.924404 1 TACACAT 17215 0.0 27.67701 5 TCAACGC 26335 0.0 27.267393 4 ATCAACG 26435 0.0 27.180307 3 CAACGCA 26805 0.0 26.773441 5 TATCAAC 27085 0.0 26.747517 2 AACGCAG 27260 0.0 26.390785 6 ACACATC 17265 0.0 26.319763 6 ACATCTC 17810 0.0 25.492357 8 CACATCT 18680 0.0 24.168274 7 ACGCAGA 30440 0.0 23.57932 7 ATACACA 21280 0.0 23.447662 4 CGCAGAG 30835 0.0 23.291416 8 CATCTCC 20340 0.0 22.091793 9 GCAGAGT 34270 0.0 20.956837 9 GAGTACT 21895 0.0 20.619059 12-13 >>END_MODULE