##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140266_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6805340 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61845109869602 33.0 33.0 33.0 33.0 33.0 2 32.65257797553098 33.0 33.0 33.0 33.0 33.0 3 32.6869029321092 33.0 33.0 33.0 33.0 33.0 4 36.61588884611202 37.0 37.0 37.0 37.0 37.0 5 36.62892140583718 37.0 37.0 37.0 37.0 37.0 6 36.60838562070374 37.0 37.0 37.0 37.0 37.0 7 36.58907034769754 37.0 37.0 37.0 37.0 37.0 8 36.57000311520071 37.0 37.0 37.0 37.0 37.0 9 36.60269332612331 37.0 37.0 37.0 37.0 37.0 10-11 36.58008005478051 37.0 37.0 37.0 37.0 37.0 12-13 36.57573361507287 37.0 37.0 37.0 37.0 37.0 14-15 38.66167032065995 40.0 37.0 40.0 37.0 40.0 16-17 38.59794000005878 40.0 37.0 40.0 37.0 40.0 18-19 38.63310694248928 40.0 37.0 40.0 37.0 40.0 20-21 38.64755505737272 40.0 37.0 40.0 37.0 40.0 22-23 38.639066819300595 40.0 37.0 40.0 37.0 40.0 24-25 38.642585083383246 40.0 37.0 40.0 37.0 40.0 26-27 38.57146505136144 40.0 37.0 40.0 37.0 40.0 28-29 38.466828885401966 40.0 37.0 40.0 37.0 40.0 30-31 38.32990545942947 40.0 37.0 40.0 37.0 40.0 32-33 38.21301732879802 40.0 37.0 40.0 37.0 40.0 34-35 38.16813343836844 40.0 37.0 40.0 37.0 40.0 36-37 38.145782229150214 40.0 37.0 40.0 37.0 40.0 38-39 38.111474477454095 40.0 37.0 40.0 37.0 40.0 40-41 38.08123568615631 40.0 37.0 40.0 37.0 40.0 42-43 38.04117273254528 40.0 37.0 40.0 35.0 40.0 44-45 37.94299373734747 40.0 37.0 40.0 33.0 40.0 46-47 37.859371736991704 40.0 37.0 40.0 33.0 40.0 48-49 37.79378122837664 40.0 37.0 40.0 33.0 40.0 50-51 37.76760890445502 40.0 37.0 40.0 33.0 40.0 52-53 37.723299838526074 40.0 37.0 40.0 33.0 40.0 54-55 37.62662190472537 40.0 37.0 40.0 33.0 40.0 56-57 37.46890990311464 40.0 37.0 40.0 33.0 40.0 58-59 37.257865416536426 38.5 37.0 40.0 33.0 40.0 60-61 37.112693831354164 37.0 37.0 40.0 33.0 40.0 62-63 36.99635028063223 37.0 37.0 40.0 33.0 40.0 64-65 36.82855913408022 37.0 37.0 40.0 33.0 40.0 66-67 36.61488930030673 37.0 37.0 40.0 33.0 40.0 68-69 36.41125590167961 37.0 37.0 40.0 33.0 40.0 70-71 36.18226518040808 37.0 37.0 40.0 33.0 40.0 72-73 35.877491049801066 37.0 37.0 37.0 33.0 40.0 74-75 35.53498384593354 37.0 33.0 37.0 33.0 40.0 76-77 33.30265195424293 35.0 33.0 37.0 27.0 37.0 78-79 35.03739287847861 37.0 33.0 37.0 33.0 37.0 80-81 35.26222290023989 37.0 33.0 37.0 33.0 37.0 82-83 35.10995324071179 37.0 33.0 37.0 33.0 37.0 84-85 34.93037805185699 37.0 33.0 37.0 33.0 37.0 86-87 34.805744179513894 37.0 33.0 37.0 33.0 37.0 88-89 34.68908281094532 37.0 33.0 37.0 33.0 37.0 90-91 34.611651286061225 37.0 33.0 37.0 33.0 37.0 92-93 34.53089548065307 37.0 33.0 37.0 33.0 37.0 94-95 34.52178468428514 37.0 33.0 37.0 33.0 37.0 96-97 34.560957588805735 37.0 33.0 37.0 33.0 37.0 98-99 34.570619281487396 37.0 33.0 37.0 33.0 37.0 100 34.495183562056944 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 0.0 19 7.0 20 31.0 21 164.0 22 629.0 23 1901.0 24 4798.0 25 9809.0 26 18151.0 27 29879.0 28 44685.0 29 64285.0 30 90240.0 31 122642.0 32 166047.0 33 226152.0 34 317406.0 35 472037.0 36 838075.0 37 2013673.0 38 2332979.0 39 51749.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.206861082620414 20.586730420522706 15.359320768690472 22.84708772816641 2 14.189377833446676 20.82552816063207 43.04837571098829 21.936718294932962 3 18.277999335815696 26.117666420781326 30.584834850279343 25.019499393123635 4 12.321544551778455 18.292105905068667 39.58516400356191 29.801185539590968 5 13.168835061877878 37.471617876549885 35.772143640141415 13.58740342143082 6 28.955922848821658 38.27641234677474 19.11676712699145 13.65089767741215 7 25.928080007758613 33.04422703347665 23.214769578007857 17.812923380756875 8 23.445294430550128 37.43989279007368 21.266681752858783 17.84813102651741 9 24.788724736750844 17.880135305510084 22.030317368419507 35.300822589319566 10-11 23.716309545151308 27.392209647130052 28.843209891056144 20.048270916662503 12-13 24.57324916394177 24.800080060556816 29.412371971810103 21.21429880369131 14-15 21.623426651163086 26.29829887224812 27.481727868639027 24.596546607949765 16-17 20.729596170066447 29.560227703538693 28.231212547793348 21.47896357860151 18-19 20.651187155968696 28.28644858302451 30.570720933854883 20.491643327151913 20-21 21.406124716015317 27.37190261895947 30.754576175197528 20.46739648982769 22-23 21.124454617752782 27.233970260781938 30.676338282080735 20.965236839384545 24-25 20.868109571728525 27.449243895865717 30.731509813070957 20.9511367193348 26-27 20.805918392433153 27.63191519644948 30.6380527907807 20.924113620336666 28-29 20.744523569525818 27.67187638834213 30.64196498921102 20.94163505292103 30-31 21.006259413121857 27.566840895931882 30.54778552719078 20.87911416375548 32-33 20.803425571530948 27.716496103053917 30.4854638615303 20.99461446388484 34-35 20.96453470748712 27.8019207594319 30.403433412933705 20.830111120147272 36-37 20.946120756655024 27.73428558857727 30.347022187953776 20.972571466813932 38-39 20.861394152525705 27.895607932766847 30.337940058061086 20.90505785664636 40-41 21.1355938003559 27.800853603771277 30.11757764564337 20.94597495022946 42-43 21.04638466415045 27.904284881034858 29.847428255366417 21.201902199448277 44-45 21.11662962751914 28.06648052120729 29.62147130890649 21.195418542367086 46-47 21.242907916003446 28.1222744315006 29.212957969294933 21.42185968320102 48-49 21.210877563430742 28.27193058078593 29.06638100234312 21.45081085344021 50-51 21.239907066414066 28.415913066408926 28.92981795172863 21.414361915448374 52-53 21.3982663695797 28.355267738960848 28.75679256675821 21.489673324701236 54-55 21.38753902760819 28.253332908886097 28.811995824447784 21.547132239057927 56-57 21.373682986059954 28.410589745984826 28.712136914736902 21.503590353218314 58-59 21.393465159181048 28.420655686810324 28.697161952016437 21.48871720199219 60-61 21.465373425200376 28.3543333391435 28.755050126347037 21.425243109309083 62-63 21.393380868325355 28.440830119254468 28.6851154672328 21.480673545187376 64-65 21.42731201866492 28.378226494322384 28.629153461838996 21.5653080251737 66-67 21.540381197732987 28.386797575510432 28.481081641888384 21.591739584868197 68-69 21.422195880734176 28.40118427674156 28.527996737267525 21.648623105256735 70-71 21.470191524157535 28.240836632789406 28.562805807131348 21.72616603592171 72-73 21.549185086263105 28.288461478916314 28.458082971680852 21.704270463139732 74-75 21.395365306485488 28.40309035772307 28.456271219020334 21.74527311677111 76-77 21.58000580159973 28.33908184375349 28.34644639275131 21.734465961895467 78-79 21.568018390134196 28.29636943057774 28.295573624629117 21.840038554658946 80-81 21.582047360076423 28.37154267783842 28.267816973397487 21.77859298868767 82-83 21.646732652725913 28.30334093586305 28.335000737974497 21.71492567343654 84-85 21.72844489209811 28.284328693829924 28.30103227611601 21.686194137955958 86-87 21.577731588178786 28.324850805319173 28.35751991117267 21.739897695329375 88-89 21.690743069820254 28.297778464355105 28.267285709319008 21.74419275650563 90-91 21.71776278508741 28.31501182097379 28.241568061871497 21.725657332067307 92-93 21.69529213170124 28.291292262370344 28.26715885362087 21.746256752307538 94-95 21.64760948098009 28.387026426472318 28.234325392730845 21.731038699816743 96-97 21.74671880486983 28.465216912554514 28.28322364219642 21.504840640379232 98-99 22.819313325427522 30.358329438303393 28.485426954180827 18.33693028208826 100 21.880570553561192 31.205775214853276 22.347146534112863 24.566507697472666 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2475.0 1 2003.5 2 2256.0 3 3161.5 4 4113.5 5 6514.0 6 8748.5 7 10640.0 8 12443.5 9 12901.5 10 11915.5 11 10618.0 12 11201.0 13 14690.0 14 23467.0 15 36137.0 16 47416.0 17 54965.5 18 57367.5 19 54690.5 20 48941.0 21 41876.0 22 36313.0 23 35056.5 24 38561.5 25 46539.0 26 57766.5 27 70485.0 28 84420.0 29 100766.5 30 117776.5 31 134516.5 32 153052.5 33 171448.0 34 189335.5 35 206161.0 36 223393.5 37 240544.5 38 253638.0 39 263560.0 40 273974.0 41 282695.5 42 288331.0 43 295231.5 44 299732.0 45 301557.5 46 300782.0 47 295425.5 48 288201.0 49 276845.5 50 262390.0 51 244942.0 52 223976.5 53 201648.0 54 178342.0 55 155816.5 56 134756.5 57 115734.5 58 99139.0 59 83608.5 60 67923.0 61 54162.5 62 41990.5 63 31663.5 64 23824.0 65 17806.0 66 13633.0 67 10760.0 68 8346.5 69 6066.0 70 4368.5 71 3185.0 72 2309.5 73 1653.5 74 1146.0 75 771.0 76 537.5 77 360.5 78 250.0 79 192.5 80 144.0 81 99.0 82 70.5 83 53.0 84 37.0 85 25.0 86 17.0 87 13.5 88 7.5 89 3.5 90 2.5 91 2.5 92 2.0 93 0.5 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.526642313242248E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.007214922399174765 14-15 4.5552463212712366E-4 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.9392233998629E-5 24-25 7.349480975978735E-5 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0026171325778741104 36-37 0.03126364307555922 38-39 0.13483817183998367 40-41 0.18223183092014303 42-43 0.05689241680162411 44-45 0.006974269958035863 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.012079872927816981 64-65 0.07480569413954882 66-67 0.19822156748145578 68-69 0.21376213780269301 70-71 0.08458275951730441 72-73 0.005916192241604237 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 96.0 20-21 481.0 22-23 1124.0 24-25 1947.0 26-27 2950.0 28-29 5069.0 30-31 11321.0 32-33 14775.0 34-35 20101.0 36-37 28554.0 38-39 35104.0 40-41 38816.0 42-43 49094.0 44-45 59069.0 46-47 57397.0 48-49 47455.0 50-51 39038.0 52-53 37620.0 54-55 39620.0 56-57 40702.0 58-59 40357.0 60-61 37799.0 62-63 35985.0 64-65 34950.0 66-67 47865.0 68-69 45451.0 70-71 46559.0 72-73 44380.0 74-75 45258.0 76-77 41706.0 78-79 47244.0 80-81 49608.0 82-83 51212.0 84-85 54344.0 86-87 57228.0 88-89 61733.0 90-91 67943.0 92-93 67880.0 94-95 81722.0 96-97 226449.0 98-99 433715.0 100-101 4655619.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.30024996939717 #Duplication Level Percentage of deduplicated Percentage of total 1 90.79630806476608 79.2654039035247 2 6.761286209428678 11.80523952395523 3 1.4448321906053623 3.784026342110395 4 0.482416277101291 1.6846024632099472 5 0.202636120336317 0.884509197909466 6 0.11624513247699567 0.6088937473780447 7 0.057368689425456636 0.3505810649081354 8 0.034483839231967246 0.24083582278841964 9 0.025744432028591172 0.2022745816274548 >10 0.07695898217106838 1.005060557060541 >50 0.0012909989830790104 0.07500185715813698 >100 4.0466975147154495E-4 0.07587416548953102 >500 2.4393693693879583E-5 0.017696772879938066 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.93886859436854E-5 0.0 0.0 0.0 3 0.0 2.93886859436854E-5 0.0 1.46943429718427E-5 0.0 4 0.0 7.34717148592135E-5 0.0 1.46943429718427E-5 0.0 5 0.0 7.34717148592135E-5 0.0 1.46943429718427E-5 0.0 6 7.34717148592135E-5 7.34717148592135E-5 0.0 1.46943429718427E-5 0.0 7 7.34717148592135E-5 7.34717148592135E-5 0.0 1.46943429718427E-5 0.0 8 7.34717148592135E-5 8.81660578310562E-5 0.0 4.40830289155281E-5 0.0 9 7.34717148592135E-5 1.175547437747416E-4 0.0 5.87773718873708E-5 0.0 10-11 7.34717148592135E-5 1.175547437747416E-4 0.0 8.81660578310562E-5 0.0 12-13 7.34717148592135E-5 1.175547437747416E-4 0.0 8.81660578310562E-5 0.0 14-15 7.34717148592135E-5 2.1306797309171915E-4 0.0 9.551322931697755E-5 7.34717148592135E-6 16-17 1.175547437747416E-4 2.204151445776405E-4 0.0 1.028604008028989E-4 1.46943429718427E-5 18-19 1.175547437747416E-4 2.571510020072473E-4 0.0 1.4694342971842699E-4 2.93886859436854E-5 20-21 1.175547437747416E-4 3.0123403092277535E-4 0.0 1.616377726902697E-4 4.40830289155281E-5 22-23 1.2490191526066296E-4 3.15928373894618E-4 0.0 1.6898494417619104E-4 5.143020040144945E-5 24-25 1.322490867465843E-4 3.6001140281014617E-4 0.0 1.9837363011987645E-4 7.34717148592135E-5 26-27 1.46943429718427E-4 4.040944317256742E-4 0.0 2.644981734931686E-4 7.34717148592135E-5 28-29 1.46943429718427E-4 4.114416032115956E-4 0.0 3.232755453805394E-4 7.34717148592135E-5 30-31 1.46943429718427E-4 4.849133180708091E-4 0.0 5.87773718873708E-4 7.34717148592135E-5 32-33 1.46943429718427E-4 4.996076610426518E-4 0.0 0.0012416719811207083 7.34717148592135E-5 34-35 1.616377726902697E-4 5.583850329300226E-4 0.0 0.0022114986172623264 7.34717148592135E-5 36-37 1.763321156621124E-4 6.31856747789236E-4 0.0 0.003680932914446596 7.34717148592135E-5 38-39 1.763321156621124E-4 6.759397767047643E-4 0.0 0.00576752961644826 7.34717148592135E-5 40-41 1.763321156621124E-4 8.008416919654271E-4 0.0 0.008192096206802306 7.34717148592135E-5 42-43 1.763321156621124E-4 8.302303779091126E-4 0.0 0.010521149567839373 7.34717148592135E-5 44-45 1.763321156621124E-4 9.257436072260901E-4 0.0 0.013364504932890936 7.34717148592135E-5 46-47 1.763321156621124E-4 0.0010139096650571462 0.0 0.016788286845330284 8.081888634513484E-5 48-49 1.763321156621124E-4 0.001028604008028989 0.0 0.019881446040903174 8.81660578310562E-5 50-51 1.910264586339551E-4 0.0010873813799163598 0.0 0.022981952407961984 8.81660578310562E-5 52-53 2.1306797309171915E-4 0.0011020757228882025 0.0 0.026280832405140668 9.551322931697755E-5 54-55 2.2776231606356186E-4 0.001109422894374124 0.0 0.029300519885854345 1.028604008028989E-4 56-57 2.351094875494832E-4 0.0011461587518037306 0.0 0.03279777351315291 1.1020757228882025E-4 58-59 2.351094875494832E-4 0.0011461587518037306 0.0 0.03615543088221897 1.175547437747416E-4 60-61 2.9388685943685397E-4 0.0011902417807192586 0.0 0.03938818633602435 1.175547437747416E-4 62-63 3.673585742960675E-4 0.0012049361236911014 0.0 0.04248869270308317 1.175547437747416E-4 64-65 3.673585742960675E-4 0.0014106569252968991 0.0 0.045310006553676965 1.175547437747416E-4 66-67 3.673585742960675E-4 0.0014180040967828205 0.0 0.049057064011496856 1.2490191526066296E-4 68-69 3.673585742960675E-4 0.0014620871256983486 0.0 0.05317882721509873 1.322490867465843E-4 70-71 3.967472602397529E-4 0.00146943429718427 0.0 0.056778941243200196 1.3959625823250566E-4 72-73 4.261359461834383E-4 0.0014767814686701913 0.0 0.05993087781066045 1.910264586339551E-4 74-75 4.261359461834383E-4 0.001513517326099798 0.0 0.06203951602711988 1.910264586339551E-4 76-77 4.261359461834383E-4 0.0015429060120434835 0.0 0.06429509767329775 1.910264586339551E-4 78-79 4.261359461834383E-4 0.0015429060120434835 0.0 0.0657277961130524 1.9837363011987645E-4 80-81 4.261359461834383E-4 0.0015429060120434835 0.0 0.06605841882991886 2.057208016057978E-4 82-83 4.261359461834383E-4 0.0015429060120434835 1.46943429718427E-5 0.06641108306124308 2.204151445776405E-4 84-85 4.261359461834383E-4 0.0015429060120434835 1.46943429718427E-5 0.06660945669136295 2.204151445776405E-4 86-87 4.261359461834383E-4 0.001550253183529405 1.46943429718427E-5 0.06670496992067992 2.204151445776405E-4 88 4.261359461834383E-4 0.0016016833839308544 1.46943429718427E-5 0.06671231709216585 2.204151445776405E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11905 0.0 52.826256 1 GTATCAA 21650 0.0 36.62964 1 TGGTATC 5045 0.0 30.650654 2 TCAACGC 25675 0.0 30.601091 4 ATCAACG 25720 0.0 30.49717 3 CAACGCA 26280 0.0 29.896614 5 GTGGTAT 5510 0.0 29.710192 1 TATCAAC 26510 0.0 29.670034 2 AACGCAG 26865 0.0 29.19801 6 ACGCAGA 30270 0.0 25.915688 7 CGCAGAG 30665 0.0 25.539604 8 GCAGAGT 34760 0.0 22.418993 9 GAGTACT 23910 0.0 21.454016 12-13 CAGAGTA 34455 0.0 20.29803 10-11 GTACATG 20285 0.0 20.10087 1 GTACTTT 25750 0.0 19.81881 14-15 TACATGG 20230 0.0 19.514982 2 ACATGGG 20035 0.0 18.971775 3 AGAGTAC 32355 0.0 18.61147 10-11 ACTTTTT 29075 0.0 17.65802 16-17 >>END_MODULE