##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140264_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6724080 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.889099921476248 31.0 31.0 34.0 30.0 34.0 2 32.015836813363315 33.0 31.0 34.0 30.0 34.0 3 32.07640167874267 33.0 31.0 34.0 30.0 34.0 4 35.782694584240524 37.0 35.0 37.0 35.0 37.0 5 35.65269970018203 37.0 35.0 37.0 33.0 37.0 6 35.65837913885617 37.0 35.0 37.0 33.0 37.0 7 35.533856081426755 37.0 35.0 37.0 33.0 37.0 8 35.52854695363529 37.0 35.0 37.0 33.0 37.0 9 37.13282337509369 39.0 37.0 39.0 33.0 39.0 10-11 37.00402657315202 39.0 37.0 39.0 33.0 39.0 12-13 36.96179217082485 39.0 37.0 39.0 33.0 39.0 14-15 38.10294270740384 40.0 37.0 41.0 33.0 41.0 16-17 38.10813791626512 40.0 37.0 41.0 33.0 41.0 18-19 38.15365276736743 40.0 37.0 41.0 33.0 41.0 20-21 38.143786604573855 40.0 37.0 41.0 33.0 41.0 22-23 38.05198175591924 40.0 37.0 41.0 33.0 41.0 24-25 37.95210579972722 40.0 37.0 41.0 33.0 41.0 26-27 37.78305750829615 40.0 37.0 41.0 32.5 41.0 28-29 37.64657071412447 39.5 37.0 41.0 32.0 41.0 30-31 37.49503899192915 39.0 36.0 41.0 32.0 41.0 32-33 37.63048544607712 39.5 36.5 41.0 32.0 41.0 34-35 37.5929231721031 40.0 36.0 41.0 32.0 41.0 36-37 37.459328452747464 39.5 36.0 41.0 32.0 41.0 38-39 37.296569185056356 39.0 36.0 41.0 31.0 41.0 40-41 37.231336730782964 39.0 36.0 40.5 31.0 41.0 42-43 37.11700016156176 39.0 36.0 40.0 31.0 41.0 44-45 37.178360019625 39.0 35.5 40.5 31.0 41.0 46-47 37.330205253527666 39.0 36.0 41.0 31.0 41.0 48-49 37.2545129673989 39.0 36.0 41.0 31.0 41.0 50-51 37.11210804996813 39.0 35.5 41.0 31.0 41.0 52-53 36.96371755717526 39.0 35.0 40.5 31.0 41.0 54-55 36.81964618103741 39.0 35.0 40.0 31.0 41.0 56-57 36.659644906269754 38.5 35.0 40.0 30.0 41.0 58-59 36.5087062219616 38.0 35.0 40.0 30.0 41.0 60-61 36.256312577121506 38.0 34.5 40.0 30.0 41.0 62-63 35.97425680559162 37.5 34.0 40.0 29.0 41.0 64-65 35.737548120165826 37.0 34.0 40.0 29.0 41.0 66-67 35.466977221452304 37.0 34.0 39.5 29.0 41.0 68-69 35.16876678416622 36.0 34.0 39.0 29.0 40.5 70-71 34.85704398671823 36.0 33.0 39.0 28.5 40.0 72-73 34.52862340954802 35.0 33.0 38.0 28.0 40.0 74-75 34.19174350590521 35.0 33.0 37.5 28.0 39.5 76-77 33.092879778992746 34.0 31.5 36.0 26.5 39.0 78-79 33.48641837403608 35.0 32.0 36.0 27.5 39.0 80-81 33.38262538577278 35.0 32.0 36.0 27.0 38.5 82-83 33.161314345582724 35.0 32.0 36.0 27.0 37.0 84-85 32.96321571569114 34.0 32.0 35.0 27.0 37.0 86-87 32.763559216351155 34.0 32.0 35.0 27.0 36.5 88-89 32.54574182471484 34.0 32.0 35.0 27.0 36.0 90-91 32.423651670209715 34.0 31.0 35.0 26.5 36.0 92-93 32.35611878919714 34.0 31.0 35.0 26.5 35.5 94-95 32.326288594287746 34.0 31.0 35.0 27.0 35.0 96-97 32.23770003348449 34.0 31.0 35.0 27.0 35.0 98-99 32.401698744480456 34.0 31.0 35.0 27.0 35.0 100-101 31.645880360271242 33.0 30.0 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 1.0 19 10.0 20 48.0 21 306.0 22 1430.0 23 5112.0 24 13034.0 25 27946.0 26 50711.0 27 79849.0 28 113999.0 29 151243.0 30 191793.0 31 237702.0 32 293121.0 33 368320.0 34 480806.0 35 640960.0 36 930904.0 37 1340820.0 38 1244089.0 39 533135.0 40 18739.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.23015490594996 21.627389918025962 15.11061736326754 24.03183781275654 2 14.295604442509708 22.589936103638138 40.42092209872994 22.693537355122217 3 17.00751626988376 27.924920583931183 31.477480934194713 23.59008221199034 4 12.17653567476889 19.218703525240628 38.8578511855897 29.746909614400778 5 12.603166529844975 38.677633222686225 35.82827687951362 12.890923367955171 6 29.129799169551816 39.10420459007031 18.759339567643455 13.006656672734412 7 25.572479803928566 33.09649795957216 24.01802179629035 17.31300044020892 8 24.67431975824202 36.86342220794517 21.121342994134515 17.34091503967829 9 25.901312893362366 15.881176309621539 21.0000029743846 37.2175078226315 10-11 24.249904819692805 26.73143389132788 29.23715214572105 19.781509143258262 12-13 25.246368276403615 24.459494830519564 29.26427109730997 21.029865795766856 14-15 22.30051546085115 25.509645929257236 26.851078511855896 25.338760098035717 16-17 21.632260472808177 28.608694423623753 27.483373190086972 22.2756719134811 18-19 21.811877470135297 27.761959823470146 29.23482412078985 21.19133858560471 20-21 22.779501163303824 26.897929850169323 28.920195558191743 21.402373428335114 22-23 22.451230894235895 26.89236804813196 28.81002548873239 21.84637556889976 24-25 22.096813533453485 27.154484466193228 28.842110949448664 21.906591050904623 26-27 22.061859584096524 27.205703198017744 28.821956701938824 21.91048051594691 28-29 22.062818704195873 27.280736504194415 28.804899956660623 21.851544834949088 30-31 22.274307192639657 27.269625215000946 28.58721846961101 21.868849122748383 32-33 22.08553626168694 27.486673206127065 28.54219358398738 21.885596948198614 34-35 22.19562958380135 27.44490428452154 28.619446129634856 21.74002000204225 36-37 22.185002257988792 27.521889579855525 28.469859794789933 21.823248367365753 38-39 22.12630644558278 27.48472207392238 28.481738128939643 21.907233351555202 40-41 22.239687342727635 27.413720983847607 28.35962151400839 21.986970159416373 42-43 22.13436362211422 27.614231545896594 28.10903382420284 22.142371007786352 44-45 22.226360027415325 27.70063720462495 27.887737583469992 22.18526518448973 46-47 22.40065955003025 27.69289488049454 27.51407945906515 22.392366110410055 48-49 22.358398169757695 27.835228562154313 27.3721846236112 22.434188644476794 50-51 22.33681927731119 27.8937844283355 27.296085384375644 22.47331090997766 52-53 22.47025225499689 27.78788347811243 27.201696592399234 22.54016767449145 54-55 22.417776192920098 27.663623075289813 27.306675811090418 22.611924920699668 56-57 22.430964724884177 27.743232607697593 27.262762249527643 22.563040417890587 58-59 22.447071689878353 27.768252276076606 27.28330898447001 22.501367049575023 60-61 22.568702188545164 27.695741459091867 27.269349395792307 22.466206956570662 62-63 22.558651860596147 27.801765700568616 27.22227703320778 22.41730540562746 64-65 22.46464873577127 27.65919645452636 27.21720248354132 22.658952326161057 66-67 22.577844900609758 27.703758369759 27.07679060785082 22.641606121780416 68-69 22.47523664100395 27.66714627571631 27.143400732275346 22.7142163510044 70-71 22.527270608288276 27.403876337641737 27.233047156719763 22.835805897350227 72-73 22.563187094509097 27.43786434752079 27.142107418974966 22.85684113899515 74-75 22.452459379616638 27.530214555136023 27.195688574698867 22.821637490548472 76-77 22.679453450841123 27.454152772323265 27.125755948468118 22.7406378283675 78-79 22.516081189135143 27.442816228503915 27.113082284601493 22.928020297759456 80-81 22.63526295419077 27.4682770725126 27.052552202013697 22.843907771282936 82-83 22.59668081079389 27.414613687911903 27.21503175118111 22.77367375011309 84-85 22.659422415027578 27.44340278929996 27.161688535644924 22.73548626002754 86-87 22.539842975228368 27.48001345498443 27.263759615078897 22.716383954708302 88-89 22.5505324390306 27.391371021609107 27.219602856243885 22.838493683116404 90-91 22.648722329188967 27.35099378134876 27.328124907998784 22.67215898146349 92-93 22.70062466554218 27.244678637540137 27.347003634468557 22.707693062449124 94-95 22.392819227307932 27.31022770598841 27.483765107760625 22.81318795894303 96-97 22.3407894783497 27.356796343876127 27.539277699129034 22.76313647864514 98-99 22.4930282590802 28.009825037489893 27.61019899281752 21.886947710612386 100-101 22.86527123046687 30.816597691709358 24.805107742395574 21.513023335428194 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1266.0 1 1322.0 2 2512.0 3 3782.0 4 5104.0 5 8416.5 6 11004.0 7 12583.0 8 13256.0 9 12560.0 10 11305.0 11 9914.5 12 10915.5 13 15416.5 14 25736.0 15 39884.5 16 50602.5 17 54585.5 18 53633.5 19 50322.5 20 45389.5 21 40473.5 22 37641.5 23 38694.5 24 44146.0 25 53971.0 26 66314.0 27 77915.0 28 90603.5 29 105140.0 30 117764.0 31 130561.5 32 144939.5 33 158654.5 34 170856.5 35 182624.0 36 195715.5 37 209227.5 38 220145.5 39 227025.0 40 234097.5 41 242483.0 42 249047.5 43 255337.0 44 262703.5 45 270275.5 46 276365.0 47 279285.5 48 281427.5 49 281848.5 50 278441.0 51 273100.0 52 263994.0 53 251471.5 54 238964.5 55 224006.0 56 207800.0 57 190661.0 58 171084.0 59 148983.0 60 124894.5 61 102138.5 62 81322.0 63 62639.5 64 46681.0 65 35130.0 66 27243.0 67 20751.5 68 15468.0 69 11266.0 70 8070.5 71 5852.0 72 4159.0 73 2842.0 74 1932.5 75 1285.5 76 864.5 77 576.0 78 383.5 79 263.0 80 177.5 81 125.0 82 97.0 83 69.0 84 48.5 85 32.0 86 21.5 87 16.5 88 9.5 89 5.5 90 5.5 91 5.5 92 4.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0033164388288063197 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 7.43596149956574E-5 20-21 0.0019409090608253382 22-23 5.057852911686913E-4 24-25 7.440738055736634E-6 26-27 2.9776959407676725E-4 28-29 0.003776595669399348 30-31 3.580849616252283E-4 32-33 3.740538028516515E-5 34-35 0.002087256637513648 36-37 0.05582016323605718 38-39 0.031475287793609696 40-41 0.04207242252364926 42-43 8.897016033660739E-4 44-45 0.0022829947073615166 46-47 0.0014085987196628986 48-49 4.642825437848457E-4 50-51 8.090789663498394E-6 52-53 8.576000104545525E-4 54-55 0.002183342791739088 56-57 0.0011230092788849634 58-59 0.003933317163029441 60-61 0.001291797181383537 62-63 1.4609875502375608E-4 64-65 6.950225439249904E-4 66-67 3.515908298431351E-4 68-69 1.6911642188103033E-4 70-71 0.0010644011399555803 72-73 0.001782848177677735 74-75 6.947050875013476E-4 76-77 0.001088544560556907 78-79 1.8075399913466402E-4 80-81 0.00221187011203267 82-83 0.0026297533036275878 84-85 0.003906178767666366 86-87 0.003756480815368968 88-89 0.0699123776546273 90-91 4.836611890284613E-4 92-93 7.531010819803245E-5 94-95 7.73142103629096E-5 96-97 0.008314711962137067 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 256.0 20-21 1127.0 22-23 2147.0 24-25 3025.0 26-27 3830.0 28-29 7332.0 30-31 17645.0 32-33 22322.0 34-35 30552.0 36-37 45639.0 38-39 54278.0 40-41 57804.0 42-43 64741.0 44-45 75819.0 46-47 74131.0 48-49 67815.0 50-51 60767.0 52-53 52199.0 54-55 57065.0 56-57 60730.0 58-59 64724.0 60-61 66702.0 62-63 62308.0 64-65 65106.0 66-67 70474.0 68-69 73488.0 70-71 75350.0 72-73 71144.0 74-75 70419.0 76-77 70158.0 78-79 78138.0 80-81 81527.0 82-83 78554.0 84-85 78197.0 86-87 83947.0 88-89 93701.0 90-91 105761.0 92-93 114935.0 94-95 147745.0 96-97 186239.0 98-99 579715.0 100-101 3646524.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.19472427184336 #Duplication Level Percentage of deduplicated Percentage of total 1 89.92774812958562 76.61369706287824 2 6.985166790956352 11.90198717496727 3 1.7662624093159127 4.514287168601728 4 0.6146988410917623 2.094763931081374 5 0.2830001794574633 1.2055061128880387 6 0.1390499901085377 0.7107795340379649 7 0.09044678338894425 0.5393912140467374 8 0.04417271916496575 0.3010626103677463 9 0.03461625009658415 0.26542096940732923 >10 0.10977062803005092 1.478862709588857 >50 0.003959709443789067 0.22358428333884733 >100 0.0010786653423662841 0.13797550925815724 >500 2.8904017639520344E-5 0.012681719537709277 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.487192299913148E-5 0.0 0.0 0.0 3 0.0 1.487192299913148E-5 0.0 0.0 0.0 4 0.0 7.43596149956574E-5 0.0 0.0 0.0 5 0.0 8.923153799478888E-5 0.0 1.487192299913148E-5 0.0 6 0.0 8.923153799478888E-5 0.0 1.487192299913148E-5 0.0 7 0.0 1.0410346099392035E-4 0.0 1.487192299913148E-5 0.0 8 0.0 1.338473069921833E-4 0.0 1.487192299913148E-5 0.0 9 0.0 2.974384599826296E-4 0.0 1.487192299913148E-5 0.0 10-11 2.974384599826296E-5 2.974384599826296E-4 0.0 1.487192299913148E-5 0.0 12-13 2.974384599826296E-5 2.974384599826296E-4 0.0 1.487192299913148E-5 0.0 14-15 5.948769199652592E-5 4.982094204709045E-4 0.0 2.230788449869722E-5 7.43596149956574E-6 16-17 8.923153799478888E-5 5.056453819704703E-4 0.0 2.974384599826296E-5 1.487192299913148E-5 18-19 8.923153799478888E-5 5.72569035466562E-4 0.0 3.71798074978287E-5 1.487192299913148E-5 20-21 8.923153799478888E-5 6.543646119617851E-4 0.0 6.692365349609167E-5 4.461576899739444E-5 22-23 1.0410346099392037E-4 7.287242269574425E-4 0.0 2.3795076798610368E-4 4.461576899739444E-5 24-25 1.1897538399305184E-4 8.253917264517971E-4 0.0 0.0012789853779253072 4.461576899739444E-5 26-27 1.1897538399305184E-4 8.476996109504943E-4 0.0 0.003539517673793292 4.461576899739444E-5 28-29 1.1897538399305184E-4 8.551355724500602E-4 0.0 0.018247849519934325 4.461576899739444E-5 30-31 1.2641134549261758E-4 9.592390334439804E-4 0.0 0.028070754660860668 4.461576899739444E-5 32-33 1.487192299913148E-4 0.0010112907639409406 0.0 0.03401208789901369 4.461576899739444E-5 34-35 1.6359115299044628E-4 0.00120462576292965 0.0 0.04219908151003557 4.461576899739444E-5 36-37 1.6359115299044628E-4 0.0013830888389192277 0.0 0.05283250645441458 4.461576899739444E-5 38-39 1.6359115299044628E-4 0.001397960761918359 0.0 0.07410679230467217 4.461576899739444E-5 40-41 1.6359115299044628E-4 0.0014723203769140165 0.0 0.12034360090897192 4.461576899739444E-5 42-43 1.6359115299044628E-4 0.0015318080689105426 0.0 0.140599160033789 4.461576899739444E-5 44-45 1.6359115299044628E-4 0.0017028351834005545 0.0 0.1675991362387122 4.461576899739444E-5 46-47 1.6359115299044628E-4 0.0018143746058940406 0.0 0.19904581742037572 5.2051730496960184E-5 48-49 1.6359115299044628E-4 0.0018218105673936062 0.0 0.2253839930518376 5.948769199652592E-5 50-51 1.6359115299044628E-4 0.0020151455663823155 0.0 0.2530532057917217 5.948769199652592E-5 52-53 1.6359115299044628E-4 0.002030017489381447 0.0 0.2875560671497067 8.923153799478888E-5 54-55 1.6359115299044628E-4 0.0020671972968792757 0.0 0.35583306563871936 1.1897538399305184E-4 56-57 1.71027114490012E-4 0.002141556911874933 0.0 0.4237754458602515 1.2641134549261758E-4 58-59 1.7846307598957776E-4 0.0021564288348740646 0.0 0.48059362767843333 1.338473069921833E-4 60-61 1.7846307598957776E-4 0.002193608642371893 0.0 0.516130087684858 1.338473069921833E-4 62-63 1.7846307598957776E-4 0.002230788449869722 0.0 0.5475024092515259 1.338473069921833E-4 64-65 1.7846307598957776E-4 0.0025356628713519174 0.0 0.5611176547572307 1.338473069921833E-4 66-67 1.7846307598957776E-4 0.0025951505633484435 0.0 0.5686131039487929 1.338473069921833E-4 68-69 1.7846307598957776E-4 0.0026992540243423635 0.0 0.5771049719812971 1.338473069921833E-4 70-71 1.7846307598957776E-4 0.0027587417163388896 0.0 0.5854481207838098 1.487192299913148E-4 72-73 1.7846307598957776E-4 0.002795921523836718 0.0 0.5928022867068803 1.7846307598957776E-4 74-75 1.7846307598957776E-4 0.00286284517733281 0.0 0.5994574722489916 1.8589903748914352E-4 76-77 1.7846307598957776E-4 0.0029892565228254275 0.0 0.6057111158701265 1.9333499898870925E-4 78-79 1.7846307598957776E-4 0.003048744214821953 0.0 0.6114368062247921 1.9333499898870925E-4 80-81 1.7846307598957776E-4 0.003048744214821953 0.0 0.6153704298580625 2.0077096048827498E-4 82-83 1.7846307598957776E-4 0.003056180176321519 0.0 0.6184637898418817 2.082069219878407E-4 84-85 1.7846307598957776E-4 0.0030710520993206506 0.0 0.6212894552117167 2.082069219878407E-4 86-87 1.7846307598957776E-4 0.0031007959453189134 0.0 0.6217653567476888 2.082069219878407E-4 88-89 1.7846307598957776E-4 0.0031677195988150052 0.0 0.6218099725166863 2.082069219878407E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11595 0.0 42.086407 1 GTATCAA 19250 0.0 31.250154 1 TCAACGC 25055 0.0 23.56043 4 ATCAACG 25195 0.0 23.413002 3 TATCAAC 25705 0.0 23.224636 2 CAACGCA 25580 0.0 23.028091 5 AACGCAG 25665 0.0 22.984241 6 GTACATG 26395 0.0 20.552778 1 TACATGG 26140 0.0 20.482718 2 ACGCAGA 29360 0.0 20.034966 7 ACATGGG 25775 0.0 20.029419 3 CGCAGAG 29895 0.0 19.70425 8 AGAGTAC 30640 0.0 17.935326 10-11 CATGGGG 17505 0.0 17.18191 4 GCAGAGT 34425 0.0 17.050938 9 GAGTACT 17555 0.0 16.599787 12-13 CAGAGTA 33130 0.0 16.537107 9 AGTACTT 19270 0.0 16.406921 12-13 ATGGGGG 9960 0.0 14.8273735 5 GTACTTT 19705 0.0 14.737186 14-15 >>END_MODULE