##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140262_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 24780385 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.34472858270765 33.0 31.0 34.0 31.0 34.0 2 32.38681049547858 34.0 31.0 34.0 30.0 34.0 3 32.47600011057133 34.0 31.0 34.0 31.0 34.0 4 36.04829021018035 37.0 35.0 37.0 35.0 37.0 5 35.97808064725387 37.0 35.0 37.0 35.0 37.0 6 36.05782480780666 37.0 35.0 37.0 35.0 37.0 7 35.99563646811783 37.0 35.0 37.0 35.0 37.0 8 35.99705856063173 37.0 35.0 37.0 35.0 37.0 9 37.691715282066845 39.0 37.0 39.0 35.0 39.0 10-11 37.62554754496348 39.0 37.0 39.0 35.0 39.0 12-13 37.61324238909121 39.0 37.0 39.0 35.0 39.0 14-15 38.98708603599177 40.0 38.0 41.0 35.0 41.0 16-17 38.98360249447295 40.0 38.0 41.0 35.0 41.0 18-19 39.01618663309711 40.0 38.5 41.0 35.0 41.0 20-21 39.02921695169843 40.0 39.0 41.0 35.0 41.0 22-23 38.988138992400984 40.0 38.5 41.0 35.0 41.0 24-25 38.950285601286836 40.0 38.0 41.0 35.0 41.0 26-27 38.845273010802146 40.0 38.0 41.0 35.0 41.0 28-29 38.786817080375926 40.0 38.0 41.0 35.0 41.0 30-31 38.6858725782866 40.0 38.0 41.0 34.0 41.0 32-33 38.58782190840055 40.0 38.0 41.0 34.0 41.0 34-35 38.532468785271334 40.0 38.0 41.0 34.0 41.0 36-37 38.46207033369565 40.0 38.0 41.0 34.0 41.0 38-39 38.40284888767313 40.0 38.0 41.0 34.0 41.0 40-41 38.35355978215184 40.0 38.0 41.0 34.0 41.0 42-43 38.28409478366087 40.0 38.0 41.0 33.0 41.0 44-45 38.22901182096984 40.0 38.0 41.0 33.0 41.0 46-47 38.14751485265151 40.0 37.5 41.0 33.0 41.0 48-49 38.05243628503064 40.0 37.0 41.0 33.0 41.0 50-51 37.93681226415604 40.0 37.0 41.0 33.0 41.0 52-53 37.83103495203321 40.0 37.0 41.0 33.0 41.0 54-55 37.67768010346052 40.0 36.0 41.0 32.5 41.0 56-57 37.51148639381465 39.0 36.0 41.0 32.0 41.0 58-59 37.32536174701042 39.0 35.5 41.0 32.0 41.0 60-61 37.117212312630016 39.0 35.0 41.0 31.5 41.0 62-63 36.85488426186793 38.0 35.0 40.0 31.0 41.0 64-65 36.596274830274204 38.0 35.0 40.0 31.0 41.0 66-67 36.327708578595704 37.0 35.0 40.0 31.0 41.0 68-69 36.006476621075734 37.0 34.5 39.5 31.0 41.0 70-71 35.68441055083695 36.0 34.0 39.0 30.5 41.0 72-73 35.361286768024506 36.0 34.0 39.0 30.0 40.5 74-75 35.04210361701077 35.0 34.0 38.0 30.0 40.0 76-77 34.714867096056125 35.0 34.0 37.0 30.0 39.0 78-79 34.40634574636766 35.0 34.0 37.0 29.5 39.0 80-81 34.12836713535689 35.0 33.5 36.0 29.0 39.0 82-83 33.85110727880826 35.0 33.0 36.0 29.0 37.0 84-85 33.651306805202694 35.0 33.0 35.5 29.0 37.0 86-87 33.455705341539314 35.0 33.0 35.0 29.0 36.5 88-89 33.331349456203796 35.0 33.0 35.0 29.0 36.0 90-91 33.206178906884105 35.0 33.0 35.0 29.0 36.0 92-93 33.10497446666243 35.0 33.0 35.0 29.0 36.0 94-95 33.3372248099231 35.0 33.0 35.0 29.0 35.5 96-97 33.40244390030184 35.0 33.0 35.0 30.0 35.0 98-99 33.751776272491306 35.0 34.0 35.0 31.0 35.0 100 33.56539474892762 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 17.0 20 132.0 21 760.0 22 3489.0 23 12009.0 24 31216.0 25 66643.0 26 119922.0 27 189964.0 28 269665.0 29 359826.0 30 456457.0 31 569671.0 32 713252.0 33 913537.0 34 1247938.0 35 1765502.0 36 2840529.0 37 5244556.0 38 6549022.0 39 3281594.0 40 144681.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.81235682980712 20.013203991786245 13.644106013687843 24.53033316471879 2 14.735530710345124 21.566471806728575 40.56278755884246 23.135209924083842 3 17.479433834462217 27.350975378308284 30.802241369534816 24.36734941769468 4 12.411066252602614 18.455100677410783 38.92015802014375 30.21367504984285 5 12.75830893114605 38.4888839982027 35.62918083531512 13.123626235336133 6 29.133857282685476 38.7386757711795 18.9424256322087 13.185041313926318 7 25.72793360555133 33.02556840823902 23.87888646604966 17.367611520159997 8 24.803468549822774 36.31027524390763 21.184380307247043 17.701875899022554 9 26.20999229834403 15.942839467586964 20.718281818462465 37.12888641560654 10-11 24.264493872875665 26.318299735859636 29.23390011898524 20.183306272279466 12-13 25.492325885977962 24.13119085922192 29.0495325234051 21.326950731395012 14-15 22.617140532723763 25.020194399723817 26.596102118671684 25.76656294888074 16-17 22.031217432658938 28.139195577469845 27.11116070230547 22.718426287565748 18-19 22.184774368921225 27.310449373567035 28.862892969580578 21.64188328793116 20-21 23.07785190766701 26.409576478419382 28.637895604559027 21.87467600935458 22-23 22.89666285185428 26.359372038178698 28.523013280907648 22.220951829059377 24-25 22.556497868898372 26.63068999935418 28.528455869027212 22.284356262720237 26-27 22.519222966620816 26.657688914003618 28.49335928372398 22.32972883565159 28-29 22.520041550294852 26.54997958861975 28.51841268173202 22.411566179353386 30-31 22.807747313843702 26.517758775400534 28.37000318508118 22.30449072567458 32-33 22.64270633990804 26.688589912265982 28.370668586919763 22.298035160906217 34-35 22.66564984762461 26.656144557154565 28.432352606580547 22.245852988640273 36-37 22.777819234756354 26.637945317281147 28.220776615677984 22.363458832284515 38-39 22.640251738718558 26.666051611855806 28.28840268999934 22.40529395942629 40-41 22.763113625633398 26.554389775074227 28.203351304759057 22.47914529453332 42-43 22.66454546870901 26.70922416793641 27.96292879162003 22.66330157173455 44-45 22.68967119732607 26.841585436022765 27.758361438456536 22.710381928194636 46-47 22.94351641148379 26.83592583937684 27.375126560381723 22.845431188757644 48-49 22.909451446231685 26.97747790592228 27.201594164197136 22.9114764836489 50-51 22.861722939036543 27.098822389155313 27.088350884424884 22.951103787383257 52-53 23.011069252097048 27.00477182048307 27.03812807529437 22.946030852125503 54-55 22.95734416210839 26.94629255667976 27.098239238745265 22.998124042466582 56-57 22.933901082893314 27.03972633244816 27.058062815381785 22.968309769276743 58-59 22.84945164643342 27.038318626680724 27.070728075228356 23.0415016516575 60-61 23.125483316485624 27.05424888694532 27.093529498000034 22.72673829856903 62-63 22.916633032161542 27.226046224985318 26.98552597253113 22.871794770322012 64-65 22.84158330637076 27.10263635928366 26.972313729729102 23.083466604616476 66-67 22.89127643469814 27.15527573838228 27.020609238872883 22.932838588046703 68-69 22.807072864905674 27.218961478543875 26.958758857574782 23.015206798975672 70-71 22.902720246814486 26.968755022273278 26.829972700749817 23.298552030162423 72-73 22.959324248107777 26.99245276461743 26.685867959381465 23.36235502789333 74-75 22.849491881352375 27.16005876994882 26.94382841284903 23.046620935849777 76-77 23.094891249586055 26.837493888237045 26.873196895044575 23.194417967132324 78-79 22.860181845352336 26.879381957405297 26.67366577923363 23.586770418008733 80-81 23.155797327754847 27.146924826927105 26.622598189511713 23.074679655806335 82-83 23.167951861670602 26.920169432428093 26.77248398362691 23.139394722274396 84-85 22.995772871910507 26.982911302834196 26.643461130835856 23.377854694419444 86-87 22.918484173995704 27.203144877966363 26.76853013426099 23.109840813776948 88-89 23.15837389734967 27.11832885545502 26.70830421028055 23.014993036914767 90-91 23.231695146237676 27.1325178079516 26.680072622420976 22.95571442338975 92-93 23.131279095923194 26.865198276972567 26.696723096784357 23.306799530319882 94-95 23.021824681746274 27.084552183671455 26.908742565007397 22.984880569574873 96-97 23.335963573812347 27.043835507042896 26.91212288761099 22.70807803153377 98-99 24.10997468473875 29.11654898584144 27.09908337228178 19.674392957138036 100 23.069664658700816 30.022915510043475 20.900887235837153 26.006532595418552 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5248.0 1 5450.5 2 8679.5 3 11787.0 4 15192.0 5 27035.0 6 36941.0 7 42082.5 8 43475.0 9 38729.5 10 31115.5 11 23123.5 12 23175.0 13 33126.0 14 61027.0 15 102515.5 16 136778.5 17 154906.0 18 155990.5 19 143033.5 20 122219.5 21 100933.0 22 87397.5 23 88295.0 24 103470.0 25 130869.5 26 166938.5 27 206265.5 28 252199.0 29 306574.5 30 358548.5 31 408698.5 32 461416.0 33 510069.5 34 556841.0 35 600999.5 36 650371.5 37 707177.5 38 754183.0 39 789477.5 40 823106.5 41 855493.5 42 881803.0 43 913104.5 44 949802.5 45 988854.0 46 1023968.0 47 1054447.5 48 1075687.0 49 1071817.0 50 1061206.0 51 1046548.0 52 1013635.0 53 967356.0 54 919857.0 55 866812.5 56 806685.5 57 736271.0 58 660457.0 59 581220.0 60 487339.0 61 398148.5 62 319461.5 63 249239.0 64 190043.0 65 142033.0 66 106869.5 67 81159.0 68 61524.0 69 46090.5 70 34282.0 71 25234.5 72 18588.0 73 13483.5 74 9403.0 75 6519.5 76 4296.0 77 2710.5 78 1889.5 79 1339.0 80 906.5 81 643.5 82 493.0 83 358.0 84 243.5 85 165.0 86 125.5 87 101.0 88 65.5 89 36.5 90 27.0 91 23.0 92 18.0 93 11.0 94 5.5 95 4.0 96 3.5 97 3.0 98 3.0 99 4.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 8.877989587328849E-5 3 0.0 4 0.0 5 0.030968041860527994 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 4.035694914378697E-6 22-23 2.0384554828670138E-4 24-25 9.286584960735006E-5 26-27 1.4742988411425427E-4 28-29 1.21255577251322E-4 30-31 4.047374109210902E-6 32-33 1.4197852757314276E-5 34-35 2.0340173537072172E-5 36-37 5.634941422436022E-4 38-39 5.131155410998364E-5 40-41 0.0 42-43 4.160190376967955E-6 44-45 2.9365013876437306E-5 46-47 4.2372170365276924E-6 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 1.0387872302208967E-4 70-71 1.0491898925055993E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 1.022122904810946E-5 90-91 0.0 92-93 0.0 94-95 0.0012524623116539995 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 865.0 20-21 4243.0 22-23 6694.0 24-25 8319.0 26-27 13501.0 28-29 26836.0 30-31 52920.0 32-33 65594.0 34-35 84610.0 36-37 120156.0 38-39 153275.0 40-41 162616.0 42-43 186870.0 44-45 234362.0 46-47 226079.0 48-49 200682.0 50-51 169764.0 52-53 144156.0 54-55 152906.0 56-57 175988.0 58-59 111050.0 60-61 196686.0 62-63 181360.0 64-65 188039.0 66-67 202134.0 68-69 207556.0 70-71 218590.0 72-73 194052.0 74-75 190458.0 76-77 199095.0 78-79 215434.0 80-81 225205.0 82-83 215563.0 84-85 206585.0 86-87 213852.0 88-89 234787.0 90-91 254655.0 92-93 261037.0 94-95 304740.0 96-97 892737.0 98-99 1497772.0 100-101 1.6178562E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 75.65284173540856 #Duplication Level Percentage of deduplicated Percentage of total 1 86.2308914818123 65.23611985976736 2 8.469973385048814 12.815551120044411 3 2.3946211210014696 5.434796780501724 4 1.076379951357809 3.257248084289563 5 0.566958980770599 2.1446029021353334 6 0.3423417397463128 1.5539475273871335 7 0.21745006632415942 1.151550081708301 8 0.14124458235816637 0.854844322810099 9 0.10661464520440504 0.7259130792293031 >10 0.43511822052268834 5.34333783059178 >50 0.01302619568586195 0.6700781021774759 >100 0.005211112375861308 0.7230958464201039 >500 1.3483008539926213E-4 0.06110955730142367 >1k 3.368770617057192E-5 0.027804905635927094 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.035449812422204E-6 2 0.0 4.842539774906645E-5 0.0 0.0 4.035449812422204E-6 3 0.0 5.2460847561488653E-5 0.0 0.0 4.035449812422204E-6 4 0.0 1.0088624531055511E-4 0.0 0.0 1.2106349437266612E-5 5 0.0 1.0088624531055511E-4 0.0 0.0 1.2106349437266612E-5 6 1.0492169512297731E-4 1.0088624531055511E-4 0.0 0.0 2.4212698874533224E-5 7 1.0492169512297731E-4 1.0088624531055511E-4 0.0 0.0 2.4212698874533224E-5 8 1.0492169512297731E-4 1.089571449353995E-4 0.0 0.0 2.824814868695543E-5 9 1.0492169512297731E-4 2.945878363068209E-4 0.0 0.0 3.228359849937763E-5 10-11 1.2106349437266613E-4 2.96605561213032E-4 0.0 4.035449812422204E-6 3.228359849937763E-5 12-13 1.3316984380993275E-4 2.9862328611924313E-4 0.0 8.070899624844408E-6 3.4301323405588736E-5 14-15 1.3922301852856606E-4 4.2977540502296474E-4 0.0 8.070899624844408E-6 4.842539774906645E-5 16-17 2.0984339024595461E-4 4.4188175446023136E-4 0.0 1.2106349437266612E-5 5.447857246769975E-5 18-19 2.1186111515216573E-4 4.7416535295960894E-4 0.0 1.4124074343477713E-5 6.053174718633306E-5 20-21 2.138788400583768E-4 5.084666763651977E-4 0.0 2.017724906211102E-5 6.254947209254416E-5 22-23 2.158965649645879E-4 5.568920741142642E-4 0.0 2.8248148686955426E-5 7.667354643602187E-5 24-25 2.17914289870799E-4 6.053174718633306E-4 0.0 6.658492190496636E-5 8.877989587328849E-5 26-27 2.1993201477701012E-4 6.295301707378638E-4 0.0 1.1702804456024393E-4 9.68507954981329E-5 28-29 2.2194973968322123E-4 6.31547895644075E-4 0.0 5.629452488328975E-4 9.68507954981329E-5 30-31 2.2194973968322123E-4 7.183100666111524E-4 0.0 0.0022679227945812787 9.8868520404344E-5 32-33 2.2396746458943235E-4 7.243632413297856E-4 0.0 0.005500318094331464 1.0492169512297731E-4 34-35 2.3809153893291005E-4 8.454267357024518E-4 0.0 0.009275481393852435 1.089571449353995E-4 36-37 2.4212698874533225E-4 9.564016055440623E-4 0.0 0.01633550084068508 1.089571449353995E-4 38-39 2.4212698874533225E-4 9.745611296999623E-4 0.0 0.04444442650911194 1.089571449353995E-4 40-41 2.461624385577545E-4 0.0010855359995415729 0.0 0.07642536627255792 1.1299259474782172E-4 42-43 2.5625106308881E-4 0.001123872772759584 0.0 0.09205869884588153 1.1904576946645501E-4 44-45 2.643219627136543E-4 0.0012792375905378386 0.0 0.10990951109113115 1.3316984380993272E-4 46-47 2.7037513743228766E-4 0.0013962656350980827 0.0 0.1291969434696031 1.5334709287204376E-4 48-49 2.7037513743228766E-4 0.0014103897094415604 0.0 0.14767728588559056 1.6545344230931036E-4 50-51 3.006410110254542E-4 0.0016545344230931036 0.0 0.166405808465042 1.6545344230931036E-4 52-53 3.107296355565097E-4 0.0016747116721552147 0.0 0.23175386500250095 1.8764841627763248E-4 54-55 3.107296355565097E-4 0.001680764846873848 0.0 0.30617966589300366 2.1589656496458792E-4 56-57 3.107296355565097E-4 0.0017069952706545923 0.0 0.36846683374774036 2.2194973968322123E-4 58-59 3.107296355565097E-4 0.0017170838951856477 0.0 0.5462687524830627 2.2598518949564343E-4 60-61 3.3494233443104294E-4 0.001741296594060181 0.0 0.7119723926807433 2.3405608912048783E-4 62-63 3.8336773218010937E-4 0.0017735801925595589 0.0 0.7191312806479803 2.4212698874533225E-4 64-65 3.874031819925316E-4 0.0019814058578993023 0.0 0.7250855868462092 2.4212698874533225E-4 66-67 4.075804310546426E-4 0.002005618556773835 0.0 0.7307594292824748 2.4414471365154336E-4 68-69 4.075804310546426E-4 0.002041937605085635 0.0 0.7358642732951889 2.461624385577545E-4 70-71 4.2372223030433145E-4 0.0020661503039601688 0.0 0.7405010051296621 2.461624385577545E-4 72-73 4.3986402955402024E-4 0.0020802743783036462 0.0 0.7442015126076532 2.945878363068209E-4 74-75 4.4389947936644247E-4 0.0021609833745520903 0.0 0.7469012285321637 2.945878363068209E-4 76-77 4.479349291788647E-4 0.0022840645938309676 0.0 0.7495000582113636 2.945878363068209E-4 78-79 4.5197037899128686E-4 0.0023445963410173008 0.0 0.7513220638016722 2.945878363068209E-4 80-81 4.5197037899128686E-4 0.0023445963410173008 0.0 0.751989930745628 2.9862328611924313E-4 82-83 4.53988103897498E-4 0.0023445963410173008 0.0 0.7524883087974621 3.147650853689319E-4 84-85 4.6004127861613126E-4 0.0023587204153607782 0.0 0.7526416558903342 3.1678281027514303E-4 86-87 4.681121782409757E-4 0.002397057188578789 0.0 0.7527183294367703 3.2081826008756526E-4 88 4.761830778658201E-4 0.0025423333818259887 0.0 0.7527243826114889 3.309068846186207E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 34370 0.0 51.718212 1 GTATCAA 65090 0.0 38.796745 1 TCAACGC 81680 0.0 30.294968 4 ATCAACG 82135 0.0 30.132338 3 CAACGCA 82910 0.0 29.85068 5 TATCAAC 84555 0.0 29.502121 2 AACGCAG 85325 0.0 29.056671 6 ACGCAGA 97245 0.0 25.464281 7 CGCAGAG 100260 0.0 24.690012 8 GTACATG 86000 0.0 22.530218 1 TACATGG 87815 0.0 21.656311 2 GCAGAGT 115750 0.0 21.25323 9 ACATGGG 87745 0.0 21.19206 3 GAGTACT 64280 0.0 19.377775 12-13 AGAGTAC 103735 0.0 19.36755 10-11 CATGGGG 64285 0.0 18.794823 4 CAGAGTA 112025 0.0 18.557018 10-11 GACCGAG 26355 0.0 17.58531 90-91 AGACCGA 26445 0.0 17.56154 88-89 CGAGACC 26295 0.0 17.468168 86-87 >>END_MODULE