##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140261_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25756509 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42272724149068 34.0 31.0 34.0 31.0 34.0 2 32.46128984327806 34.0 31.0 34.0 31.0 34.0 3 32.551652516262976 34.0 31.0 34.0 31.0 34.0 4 36.10398462773041 37.0 35.0 37.0 35.0 37.0 5 36.04299651012488 37.0 35.0 37.0 35.0 37.0 6 36.12037201936023 37.0 36.0 37.0 35.0 37.0 7 36.06264979465967 37.0 35.0 37.0 35.0 37.0 8 36.064177563815036 37.0 35.0 37.0 35.0 37.0 9 37.775314581646136 39.0 38.0 39.0 35.0 39.0 10-11 37.71011865389056 39.0 37.5 39.0 35.0 39.0 12-13 37.702234491483296 39.0 37.5 39.0 35.0 39.0 14-15 39.09622082324899 40.0 38.0 41.0 36.0 41.0 16-17 39.0935356379236 40.0 38.0 41.0 36.0 41.0 18-19 39.13417410333054 40.5 38.5 41.0 36.0 41.0 20-21 39.14921702778345 41.0 39.0 41.0 36.0 41.0 22-23 39.10526996823039 40.0 39.0 41.0 35.0 41.0 24-25 39.07066604902475 40.5 39.0 41.0 35.0 41.0 26-27 38.97494716454591 40.0 38.0 41.0 35.0 41.0 28-29 38.919827687487924 40.0 38.0 41.0 35.0 41.0 30-31 38.816842231729495 40.0 38.0 41.0 35.0 41.0 32-33 38.71703322472415 40.0 38.0 41.0 35.0 41.0 34-35 38.6647568109707 40.0 38.0 41.0 34.5 41.0 36-37 38.59842552188592 40.0 38.0 41.0 34.0 41.0 38-39 38.544883348927726 40.0 38.0 41.0 34.0 41.0 40-41 38.497897709804995 40.0 38.0 41.0 34.0 41.0 42-43 38.42551518767582 40.0 38.0 41.0 34.0 41.0 44-45 38.37397578175149 40.0 38.0 41.0 34.0 41.0 46-47 38.30019175824107 40.0 38.0 41.0 33.0 41.0 48-49 38.20815527051264 40.0 38.0 41.0 33.0 41.0 50-51 38.10027561154072 40.0 37.0 41.0 33.0 41.0 52-53 37.9995189851016 40.0 37.0 41.0 33.0 41.0 54-55 37.86007046250849 40.0 37.0 41.0 33.0 41.0 56-57 37.69852886600219 39.5 36.0 41.0 33.0 41.0 58-59 37.52615931349028 39.0 36.0 41.0 32.0 41.0 60-61 37.32621372063595 39.0 35.5 41.0 32.0 41.0 62-63 37.083549775509574 39.0 35.0 40.5 32.0 41.0 64-65 36.8484036691473 38.0 35.0 40.0 31.0 41.0 66-67 36.58279873744702 37.5 35.0 40.0 31.0 41.0 68-69 36.2653361378988 37.0 35.0 40.0 31.0 41.0 70-71 35.94375158768798 36.5 34.5 39.0 31.0 41.0 72-73 35.630672405062406 36.0 34.0 39.0 31.0 41.0 74-75 35.30221127847658 35.5 34.0 38.5 30.0 40.0 76-77 34.964331508373775 35.0 34.0 37.5 30.0 39.5 78-79 34.63465337460609 35.0 34.0 37.0 30.0 39.0 80-81 34.3338542944649 35.0 34.0 36.5 30.0 39.0 82-83 34.031309410187575 35.0 33.5 36.0 29.0 37.5 84-85 33.81746956572765 35.0 33.0 36.0 29.0 37.0 86-87 33.603402237098 35.0 33.0 35.0 29.0 37.0 88-89 33.45988604449347 35.0 33.0 35.0 29.0 36.0 90-91 33.33887519416682 35.0 33.0 35.0 29.0 36.0 92-93 33.21684272311997 35.0 33.0 35.0 29.0 36.0 94-95 33.42593911181011 35.0 33.0 35.0 30.0 36.0 96-97 33.476481097429385 35.0 33.0 35.0 30.0 35.5 98-99 33.81734788807097 35.0 34.0 35.0 31.0 35.0 100 33.61282497792108 35.0 34.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 24.0 20 103.0 21 669.0 22 3096.0 23 10713.0 24 28590.0 25 61323.0 26 110954.0 27 177793.0 28 256537.0 29 343932.0 30 440490.0 31 552100.0 32 691856.0 33 888532.0 34 1216753.0 35 1737847.0 36 2821603.0 37 5327740.0 38 7119540.0 39 3774921.0 40 191391.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.0324159613401 20.16233255834477 13.726044938776447 24.079206541538685 2 14.488278488256745 21.809889468634896 41.17738092418649 22.52445111892187 3 17.316702352791676 27.99775388815309 30.903019504700737 23.782524254354502 4 11.973408352816758 18.635087542337356 39.62413539816285 29.76736870668304 5 12.374968182545851 38.95147303258612 35.76180092577238 12.911757859095651 6 28.339422862003545 39.26136496215384 19.404644472587492 12.994567703255127 7 25.339132721752005 33.43199577240844 24.183541333183005 17.045330172656552 8 24.565413736776208 36.42603506554401 21.525836440023763 17.482714757656016 9 26.316862273532486 15.963133823764702 21.002628888876206 36.717375013826604 10-11 23.958821438107158 26.68192145138924 29.492706096156123 19.86655101434748 12-13 25.208150297076365 24.509356062189948 29.38916721982781 20.89332642090588 14-15 22.399473857268468 25.354521064947118 27.12782427152686 25.118180806257556 16-17 21.572950744217703 28.49191829529382 27.575231565737425 22.35989939475105 18-19 21.71411117865391 27.59252234066348 29.46443363112602 21.228932849556593 20-21 22.875311946158277 26.680981790538866 29.136306515164183 21.30739974813867 22-23 22.47356817291645 26.638892504372354 29.02596144098053 21.861577881730668 24-25 22.06605211993373 26.883222524575075 29.159088746064395 21.891636609426804 26-27 22.05644073344484 26.95795016094008 29.053243149840775 21.932365955774305 28-29 22.101132131939096 26.92810491066229 29.071240459323633 21.899522498074976 30-31 22.304810150008702 26.862737770950034 28.92179125603482 21.910660823006445 32-33 22.12487095104795 27.072352471300487 28.850723801537566 21.952052776114 34-35 22.256421107502554 27.013324887238404 28.864392976553976 21.865861028705062 36-37 22.312131579497045 26.957837587188404 28.776229392024373 21.953801441290175 38-39 22.15102588341168 27.045796410052336 28.727737532330348 22.07544017420563 40-41 22.44388490401702 26.855314439445177 28.743775312694382 21.95702534384342 42-43 22.195414658153297 26.979475090693693 28.491304546467394 22.333805704685613 44-45 22.225617391294147 27.153976413860004 28.28172623536757 22.338679959478277 46-47 22.444572587703153 27.111822033551725 28.00730416574649 22.436301212998632 48-49 22.439634995891367 27.399238501147927 27.705252831427963 22.455873671532746 50-51 22.379491223919675 27.5212761598261 27.454396089459394 22.64483652679483 52-53 22.409505250650128 27.282730479904068 27.41326740784033 22.894496861605482 54-55 22.591725611022152 27.044525083295618 27.744572497666613 22.619176808015613 56-57 22.356040753104704 26.837084714633146 27.856981806853394 22.949892725408752 58-59 22.192273669473337 26.679214365922505 27.91004788931948 23.218464075284682 60-61 22.45256953836631 26.91365995391794 28.09146667763506 22.542303830080687 62-63 22.01469735790685 27.214839236228816 28.044425724269495 22.72603768159484 64-65 21.82651451952335 27.469674042623627 27.72837379047749 22.97543764737554 66-67 21.929249818479697 28.087451918140243 27.255080993319435 22.72821727006063 68-69 22.032924871827785 27.971676491465974 27.133161961624587 22.862236675081654 70-71 22.05843375775675 27.387467092275745 27.108617954083574 23.44548119588393 72-73 22.28639197885462 27.012854080163585 26.988978849153806 23.711775091827985 74-75 22.263229623622472 27.068166652675384 27.310908967898268 23.357694755803873 76-77 22.65749510547894 26.972914181024905 26.668030114281034 23.70156059921512 78-79 22.777298991134703 27.112486719230038 26.16142823499658 23.948786054638678 80-81 22.698119318162714 27.45338311304823 26.300446646527664 23.54805092226139 82-83 22.702752562512526 27.163524480916045 26.465233247781413 23.668489708790013 84-85 22.67140221283682 27.567518562964118 26.39334509171425 23.36773413248481 86-87 23.12377604504089 27.49403867227505 26.504107365726753 22.878077916957306 88-89 22.861946359067186 27.637323722766528 26.772496274219588 22.728233643946698 90-91 22.876580398702913 27.22779675364301 26.674345560201573 23.2212772874525 92-93 22.94864875180871 26.75580810440451 26.901174664122117 23.394368479664656 94-95 22.07032557310289 27.274024975927443 27.55103014309665 23.104619307873016 96-97 22.2165681225102 27.170116036230375 27.69782874447269 22.915487096786737 98-99 23.440982274718998 29.05458902956787 27.942434123821513 19.56199457189162 100 22.50553293429662 30.117588873814206 21.68554180503206 25.691336386857117 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4830.0 1 5152.5 2 9365.5 3 13453.0 4 17318.0 5 30915.0 6 42382.5 7 48291.5 8 49787.5 9 43862.0 10 34625.5 11 25327.0 12 25758.5 13 37639.0 14 70033.5 15 117756.0 16 156714.0 17 177276.5 18 178730.5 19 164227.0 20 140382.5 21 115952.0 22 100956.5 23 102808.0 24 120898.0 25 152938.5 26 199154.0 27 250589.0 28 301741.5 29 360089.5 30 413843.0 31 465111.5 32 522565.0 33 577278.0 34 630283.0 35 677781.5 36 733494.0 37 789177.5 38 823183.5 39 850744.0 40 883671.5 41 911609.0 42 930936.5 43 953225.0 44 978660.5 45 1014507.5 46 1040993.5 47 1050249.0 48 1059806.5 49 1059996.5 50 1047553.0 51 1027332.0 52 993197.0 53 938993.5 54 884896.5 55 832003.5 56 775316.5 57 710730.0 58 639593.0 59 563543.0 60 470700.5 61 378766.0 62 299022.0 63 232496.5 64 177754.0 65 133141.5 66 100231.5 67 75197.5 68 55925.0 69 41808.0 70 31086.5 71 22472.5 72 16167.5 73 11510.5 74 7997.5 75 5412.5 76 3661.0 77 2445.5 78 1695.0 79 1223.5 80 877.0 81 591.5 82 437.0 83 298.0 84 193.0 85 141.5 86 108.5 87 84.5 88 63.0 89 49.5 90 36.5 91 23.5 92 17.5 93 10.0 94 2.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.376776099587099E-5 3 0.0 4 0.0 5 0.03130470825840567 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.941367140248944E-6 22-23 2.3107109296355123E-4 24-25 7.575001399918529E-5 26-27 1.4572780575719264E-4 28-29 1.2055070673824009E-4 30-31 5.841816462199845E-6 32-33 1.756996183101492E-5 34-35 2.3501990011419226E-5 36-37 5.369435767298567E-4 38-39 5.5336471438277895E-5 40-41 0.0 42-43 4.007675339503203E-6 44-45 3.0336070267075526E-5 46-47 4.089678302224036E-6 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 1.1190713656166112E-4 70-71 9.092054770449235E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0012389431321540698 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 882.0 20-21 4295.0 22-23 7059.0 24-25 8533.0 26-27 14163.0 28-29 30040.0 30-31 61607.0 32-33 77135.0 34-35 100089.0 36-37 142214.0 38-39 117357.0 40-41 191002.0 42-43 214970.0 44-45 267518.0 46-47 259523.0 48-49 230358.0 50-51 121718.0 52-53 29579.0 54-55 28153.0 56-57 26897.0 58-59 122423.0 60-61 223833.0 62-63 202998.0 64-65 206765.0 66-67 223626.0 68-69 233397.0 70-71 243388.0 72-73 217667.0 74-75 209604.0 76-77 220459.0 78-79 240160.0 80-81 251475.0 82-83 236116.0 84-85 223987.0 86-87 230783.0 88-89 253102.0 90-91 275652.0 92-93 279626.0 94-95 316895.0 96-97 884913.0 98-99 1675634.0 100-101 1.6850914E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 75.76995076991919 #Duplication Level Percentage of deduplicated Percentage of total 1 85.37292695164793 64.6870247221027 2 9.076907530420701 13.755136734461704 3 2.6585945729089877 6.04324739719465 4 1.1270942996901272 3.415995184023099 5 0.601279575618826 2.277946192179817 6 0.33459234591096665 1.521122734659943 7 0.21621021401678495 1.1467566090403842 8 0.14024878781349803 0.8501314998535671 9 0.0926077601577582 0.6315196885259241 >10 0.36603736954449334 4.357541658665773 >50 0.009001363243556871 0.4635198246687833 >100 0.0041461838997936444 0.5748427524143453 >500 2.4015195793193812E-4 0.12640931661066818 >1k 1.1289316862305624E-4 0.1488056855987397 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.49426236296231E-5 0.0 0.0 0.0 3 3.882513736624789E-6 3.49426236296231E-5 0.0 0.0 0.0 4 3.882513736624789E-6 1.0871038462549409E-4 0.0 0.0 0.0 5 7.765027473249578E-6 1.0871038462549409E-4 0.0 3.882513736624789E-6 0.0 6 7.765027473249578E-6 1.0871038462549409E-4 0.0 3.882513736624789E-6 0.0 7 7.765027473249578E-6 1.1259289836211888E-4 0.0 3.882513736624789E-6 0.0 8 7.765027473249578E-6 1.6306557693824113E-4 0.0 3.882513736624789E-6 0.0 9 7.765027473249578E-6 2.678934478271104E-4 0.0 3.882513736624789E-6 0.0 10-11 1.5530054946499155E-5 2.737172184320476E-4 0.0 1.1647541209874366E-5 0.0 12-13 1.5530054946499155E-5 2.814822459052972E-4 0.0 1.5530054946499155E-5 0.0 14-15 2.5236339288061127E-5 3.688388049793549E-4 0.0 1.9412568683123944E-5 0.0 16-17 3.3001366761310705E-5 3.824276030575417E-4 0.0 2.9118853024685916E-5 0.0 18-19 3.6883880497935494E-5 4.2125274042378955E-4 0.0 3.49426236296231E-5 0.0 20-21 3.882513736624789E-5 4.6784290526328707E-4 0.0 4.270765110287268E-5 0.0 22-23 3.882513736624789E-5 5.396694093908457E-4 0.0 7.959153160080816E-5 0.0 24-25 4.270765110287268E-5 6.037308860451546E-4 0.0 1.1453415523043128E-4 0.0 26-27 4.6590164839497466E-5 6.309084822015282E-4 0.0 1.8830191622630225E-4 0.0 28-29 4.6590164839497466E-5 6.386735096747777E-4 0.0 8.755068476088898E-4 0.0 30-31 4.6590164839497466E-5 7.473838943002718E-4 0.0 0.0034787323080158108 0.0 32-33 5.241393544443465E-5 7.570901786418338E-4 0.0 0.008450291147763852 0.0 34-35 5.629644918105944E-5 8.61918049530703E-4 0.0 0.014629311759602203 0.0 36-37 5.823770604937183E-5 9.667459204195723E-4 0.0 0.028647127605686003 0.0 38-39 5.823770604937183E-5 9.90041002839321E-4 0.0 0.1912856280328984 0.0 40-41 6.212021978599662E-5 0.0010987513874648152 0.0 0.36533289507518274 0.0 42-43 6.600273352262141E-5 0.0011278702404895011 0.0 0.3984216183955675 0.0 44-45 6.600273352262141E-5 0.0012191093133001837 0.0 0.4401411697524692 0.0 46-47 6.794399039093381E-5 0.0012851120468228051 0.0 0.4847143687057901 0.0 48-49 6.98852472592462E-5 0.0012928770742960546 0.0 0.5280218681809712 0.0 50-51 6.98852472592462E-5 0.0014792377336540446 0.0 0.5716516162962924 0.0 52-53 6.98852472592462E-5 0.0014947677886005437 0.0 1.0681746505320266 0.0 54-55 6.98852472592462E-5 0.0015044740729421057 0.0 1.6912191011600215 0.0 56-57 7.182650412755859E-5 0.0015180628710202925 0.0 2.364592577355883 0.0 58-59 7.376776099587099E-5 0.0015432992103083536 0.0 3.078947927298688 0.0 60-61 7.376776099587099E-5 0.0015879481182795386 0.0 3.2736986988415238 0.0 62-63 7.376776099587099E-5 0.0016364795399873484 0.0 3.2816753233134195 0.0 64-65 7.376776099587099E-5 0.0018480765386333995 0.0 3.287654394467822 0.0 66-67 7.376776099587099E-5 0.0018694303641848358 0.0 3.293119032552121 0.0 68-69 7.376776099587099E-5 0.001939315611444082 0.0 3.2983021883905153 0.0 70-71 7.376776099587099E-5 0.001976199491942017 0.0 3.302850553232971 0.0 72-73 7.376776099587099E-5 0.001993670803756829 0.0 3.3064147008431926 0.0 74-75 7.376776099587099E-5 0.0020557910235428256 0.0 3.309332409916266 0.0 76-77 7.376776099587099E-5 0.002170325178773257 0.0 3.312096759696743 0.0 78-79 7.376776099587099E-5 0.002240210426032503 0.0 3.3138011832271212 0.0 80-81 7.376776099587099E-5 0.002259622994715627 0.0 3.314468975589821 0.0 82-83 7.376776099587099E-5 0.002267388022188877 0.0 3.3149465247794256 0.0 84-85 7.376776099587099E-5 0.0022829180771353754 0.0 3.315103766585759 0.0 86-87 7.376776099587099E-5 0.002323684471369936 0.0 3.3151561805212033 0.0 88 7.376776099587099E-5 0.002496456332649739 0.0 3.315158121778072 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 39415 0.0 53.300156 1 GTATCAA 76010 0.0 40.012287 1 ATCTCGT 24390 0.0 38.161438 94 TATCTCG 29755 0.0 32.689552 94 ATCAACG 96630 0.0 30.884264 3 TCAACGC 96780 0.0 30.83197 4 TATCAAC 99110 0.0 30.379498 2 CAACGCA 98630 0.0 30.26669 5 AACGCAG 101125 0.0 29.60704 6 TATGCCG 14470 0.0 27.436003 86-87 ACGCAGA 115185 0.0 25.963322 7 CTCGTAT 14935 0.0 25.933308 82-83 TCTCGTA 15105 0.0 25.926744 82-83 ATGCCGT 15885 0.0 25.863117 88-89 CCGTCTT 15855 0.0 25.6874 90-91 CGCAGAG 118085 0.0 25.322071 8 TGCCGTC 16305 0.0 24.85269 88-89 GCCGTCT 16975 0.0 24.599113 90-91 TCGTATG 16590 0.0 24.450916 84-85 GTACATG 110400 0.0 23.791374 1 >>END_MODULE