##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140260_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25523718 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.376230061780184 33.0 31.0 34.0 31.0 34.0 2 32.4194808530638 34.0 31.0 34.0 31.0 34.0 3 32.50850726371448 34.0 31.0 34.0 31.0 34.0 4 36.06987551735214 37.0 35.0 37.0 35.0 37.0 5 36.002426331461585 37.0 35.0 37.0 35.0 37.0 6 36.07964666433001 37.0 35.0 37.0 35.0 37.0 7 36.019262044816514 37.0 35.0 37.0 35.0 37.0 8 36.02090114770897 37.0 35.0 37.0 35.0 37.0 9 37.71984489093634 39.0 38.0 39.0 35.0 39.0 10-11 37.65634262218381 39.0 37.0 39.0 35.0 39.0 12-13 37.64545559154038 39.0 37.0 39.0 35.0 39.0 14-15 39.03036775441572 40.0 38.0 41.0 36.0 41.0 16-17 39.026836450708316 40.0 38.0 41.0 35.5 41.0 18-19 39.0595063579687 40.0 38.5 41.0 35.0 41.0 20-21 39.072028208693524 40.0 39.0 41.0 35.0 41.0 22-23 39.03301614088366 40.0 39.0 41.0 35.0 41.0 24-25 38.99734202142645 40.0 38.0 41.0 35.0 41.0 26-27 38.89504667061276 40.0 38.0 41.0 35.0 41.0 28-29 38.8393010243263 40.0 38.0 41.0 35.0 41.0 30-31 38.74030068803752 40.0 38.0 41.0 35.0 41.0 32-33 38.64352444228159 40.0 38.0 41.0 34.0 41.0 34-35 38.59094411994441 40.0 38.0 41.0 34.0 41.0 36-37 38.52481767541123 40.0 38.0 41.0 34.0 41.0 38-39 38.47026125087176 40.0 38.0 41.0 34.0 41.0 40-41 38.421455112925855 40.0 38.0 41.0 34.0 41.0 42-43 38.352417463465756 40.0 38.0 41.0 34.0 41.0 44-45 38.301687419597314 40.0 38.0 41.0 33.0 41.0 46-47 38.225822886308144 40.0 38.0 41.0 33.0 41.0 48-49 38.137520377649956 40.0 37.0 41.0 33.0 41.0 50-51 38.02859606257164 40.0 37.0 41.0 33.0 41.0 52-53 37.92449082431937 40.0 37.0 41.0 33.0 41.0 54-55 37.78038921337568 40.0 36.5 41.0 33.0 41.0 56-57 37.61820509303331 39.5 36.0 41.0 32.5 41.0 58-59 37.43667296793727 39.0 36.0 41.0 32.0 41.0 60-61 37.23404826027881 39.0 35.0 41.0 32.0 41.0 62-63 36.98301529531512 38.5 35.0 40.5 31.5 41.0 64-65 36.72788970837222 38.0 35.0 40.0 31.0 41.0 66-67 36.460448094318906 37.5 35.0 40.0 31.0 41.0 68-69 36.14290631005733 37.0 35.0 40.0 31.0 41.0 70-71 35.823909448678506 36.5 34.0 39.0 31.0 41.0 72-73 35.501199347207205 36.0 34.0 39.0 30.0 40.5 74-75 35.18054173751521 35.5 34.0 38.5 30.0 40.0 76-77 34.85143272738736 35.0 34.0 37.5 30.0 39.5 78-79 34.53186714250874 35.0 34.0 37.0 30.0 39.0 80-81 34.2524483678158 35.0 34.0 36.5 29.5 39.0 82-83 33.96797667942409 35.0 33.5 36.0 29.0 37.5 84-85 33.75234283930529 35.0 33.0 36.0 29.0 37.0 86-87 33.550714544419165 35.0 33.0 35.0 29.0 37.0 88-89 33.419044175716834 35.0 33.0 35.0 29.0 36.0 90-91 33.29197185266614 35.0 33.0 35.0 29.0 36.0 92-93 33.172285223088615 35.0 33.0 35.0 29.0 36.0 94-95 33.40365893380306 35.0 33.0 35.0 29.5 36.0 96-97 33.46241588075838 35.0 33.0 35.0 30.0 35.0 98-99 33.79420478460465 35.0 34.0 35.0 31.0 35.0 100 33.60393135824947 35.0 34.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 24.0 20 115.0 21 704.0 22 3398.0 23 11600.0 24 30667.0 25 65733.0 26 117921.0 27 186906.0 28 267309.0 29 354978.0 30 452466.0 31 565059.0 32 708985.0 33 911337.0 34 1243455.0 35 1756817.0 36 2825956.0 37 5273496.0 38 6884932.0 39 3691541.0 40 170315.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.60190533369786 20.197566827842245 13.782067330472778 24.41846050798712 2 14.610081849450452 21.63698117317676 40.87073616706675 22.882200810306035 3 17.444613672663206 27.471377798485314 30.778517455803268 24.305491073048213 4 12.303509230120783 18.603480887854975 39.2128803491717 29.88012953285254 5 12.719509122897833 38.47517043951911 35.75342897395794 13.05189146362512 6 28.93161176596607 38.874579322651975 19.15065430514473 13.043154606237225 7 25.55668809693008 33.08044306084247 24.099753021875575 17.263115820351878 8 24.536711305147627 36.49981558329394 21.390719800304954 17.57275331125348 9 26.03329969403361 16.097819291060965 20.96455931694591 36.90432169795952 10-11 24.084710150770356 26.516736315610444 29.376335375590656 20.022218158028544 12-13 25.299725141924856 24.29078906137421 29.24252454129136 21.16696125540958 14-15 22.431890604652505 25.215826706751738 26.8575781161663 25.494704572429455 16-17 21.848509688126157 28.283060093361005 27.358288866849257 22.510141351663577 18-19 21.956924535837608 27.492221156807954 29.105130765039792 21.445723542314642 20-21 22.92393880599626 26.58977193057348 28.852023433005293 21.63426583042497 22-23 22.62880656823459 26.5696513074745 28.70465478558202 22.096887338708886 24-25 22.31674905099731 26.793170696923944 28.721858395907475 22.16822185617127 26-27 22.288986322746048 26.855871581608078 28.681790395883194 22.173351699762684 28-29 22.310413469517854 26.82422333748343 28.67561101493163 22.18975217806708 30-31 22.569400379300316 26.733532184735914 28.556887512441964 22.140179923521806 32-33 22.389310336284417 26.942813148465504 28.522192170322857 22.145684344927215 34-35 22.488304145659967 26.919114196674123 28.51006482824097 22.082516829424943 36-37 22.5304036436388 26.883215586588964 28.40781351929586 22.178567250476373 38-39 22.45008837861534 26.916576572671495 28.441913453896824 22.191421594816344 40-41 22.641761915754024 26.81482350476051 28.29611686765367 22.247297711831795 42-43 22.47008045847366 26.955599273613256 28.103158190843896 22.471162077069188 44-45 22.531278889293933 27.06588540112965 27.9278647546016 22.47497095497482 46-47 22.73295297123704 27.07984203309789 27.526540335796355 22.660664659868715 48-49 22.696317124854595 27.220428402068038 27.39028915168433 22.69296532139304 50-51 22.706539194534813 27.35097216287562 27.246064031415397 22.69642461117417 52-53 22.815021358908965 27.26614836722495 27.151592342265367 22.76723793160071 54-55 22.766300887159648 27.140485451018076 27.298070698130072 22.795142963692197 56-57 22.744006483398586 27.207686936953774 27.288652315499956 22.759654264147688 58-59 22.742061422547852 27.264016369433385 27.25075769482896 22.7431645131898 60-61 22.83754781766355 27.28723111385033 27.24518638223568 22.630034686250443 62-63 22.797375639393287 27.445486163739968 27.12262410414567 22.634514092721076 64-65 22.75097792374757 27.342460879895736 27.098776004023588 22.807785192333103 66-67 22.804415940651655 27.394809163086677 26.991634849649298 22.80914004661237 68-69 22.74067609588779 27.29510926889052 27.089314975627087 22.874899659594604 70-71 22.796795139819757 27.071149434966234 27.132191552161412 22.9998638730526 72-73 22.852042689133558 27.138357243669418 26.99042407943604 23.01917598776099 74-75 22.692859305642045 27.303465947266336 27.06826126733101 22.935413479760605 76-77 22.94305915426009 27.193012646634724 26.978652912217306 22.885275286887882 78-79 22.770916221658688 27.240952574172532 26.911251200258114 23.076880003910667 80-81 22.87140785330433 27.263143633144676 26.914865196836917 22.95058331671408 82-83 22.852924246229808 27.231669728282444 27.05791663540352 22.857489390084226 84-85 22.923252114781917 27.302868718475082 26.91497685414851 22.8589023125945 86-87 22.772194474337514 27.304700710679363 27.058325555493308 22.86477925948982 88-89 22.79846938629296 27.251670814635165 27.00592514358693 22.94393465548495 90-91 22.89867306229606 27.271372608554195 26.999178447893396 22.830775881256343 92-93 23.000857576896898 27.224687089750887 26.97223769900677 22.80221763434545 94-95 22.75396076017044 27.301306806214864 27.137115175866374 22.807617257748326 96-97 22.813828436056145 27.387326694430698 27.154187054100227 22.644657815412934 98-99 23.890738392076972 29.328301603963858 27.29500825804167 19.4859517459175 100 22.93250744265665 30.228205498381012 21.106976168630194 25.73231089033215 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5421.0 1 5618.0 2 9037.5 3 12366.0 4 15964.5 5 28356.5 6 38674.5 7 43752.0 8 44480.0 9 38930.0 10 30935.5 11 22825.0 12 23062.5 13 33460.5 14 62315.0 15 104809.0 16 139647.5 17 158545.0 18 160452.5 19 148171.5 20 128077.0 21 107786.0 22 95677.0 23 98870.5 24 116665.0 25 147852.5 26 189593.5 27 235911.5 28 287601.5 29 345803.5 30 401553.5 31 454090.0 32 509400.5 33 562216.0 34 611682.0 35 658132.0 36 709569.5 37 763882.5 38 807875.0 39 838940.0 40 872659.5 41 908494.5 42 935467.0 43 960736.5 44 988768.5 45 1025701.0 46 1051155.5 47 1060528.5 48 1070537.0 49 1071313.5 50 1060869.0 51 1046338.5 52 1017126.5 53 967181.0 54 914830.0 55 856973.5 56 797369.5 57 735296.5 58 662228.5 59 580577.0 60 485784.0 61 394052.0 62 314872.5 63 243171.5 64 180406.0 65 133785.5 66 100585.5 67 76014.5 68 57549.5 69 43321.5 70 32579.5 71 24324.0 72 17898.5 73 12998.0 74 9134.5 75 6172.0 76 4201.5 77 2910.5 78 2020.0 79 1394.5 80 973.0 81 676.0 82 501.5 83 358.5 84 244.5 85 175.0 86 128.0 87 89.5 88 63.5 89 42.5 90 28.5 91 20.5 92 15.0 93 11.5 94 7.5 95 4.0 96 3.0 97 2.5 98 2.0 99 2.5 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.0970188590862821E-4 3 0.0 4 0.0 5 0.031037797863148305 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 3.918156374208619E-6 22-23 2.1554422663809205E-4 24-25 8.820129684130771E-5 26-27 1.4705775375634033E-4 28-29 1.432307536912135E-4 30-31 1.964818278280042E-6 32-33 1.5755285750663543E-5 34-35 1.975133542729091E-5 36-37 5.829470846241281E-4 38-39 4.984634763648359E-5 40-41 0.0 42-43 8.08686734996248E-6 44-45 3.8741638152651064E-5 46-47 2.0597894252553087E-6 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 9.913769804923823E-5 70-71 1.38788772634458E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 7.47598675673802E-6 90-91 0.0 92-93 0.0 94-95 0.001195002163964873 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 861.0 20-21 4360.0 22-23 6960.0 24-25 8505.0 26-27 13952.0 28-29 27920.0 30-31 56535.0 32-33 69279.0 34-35 89927.0 36-37 129481.0 38-39 165427.0 40-41 173222.0 42-43 197099.0 44-45 244490.0 46-47 235387.0 48-49 210320.0 50-51 179713.0 52-53 155871.0 54-55 164002.0 56-57 181644.0 58-59 191255.0 60-61 199538.0 62-63 184473.0 64-65 187887.0 66-67 202521.0 68-69 210362.0 70-71 219628.0 72-73 198612.0 74-75 194766.0 76-77 202528.0 78-79 219993.0 80-81 230126.0 82-83 219019.0 84-85 209414.0 86-87 216651.0 88-89 236918.0 90-91 258982.0 92-93 266006.0 94-95 308019.0 96-97 832169.0 98-99 1540368.0 100-101 1.6679528E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.3427923352651 #Duplication Level Percentage of deduplicated Percentage of total 1 86.09776832652888 66.59041816208487 2 8.76002594987028 13.55049735784701 3 2.5016889986332744 5.804628381261319 4 1.0422385004719255 3.224385436232729 5 0.5366843774212607 2.0754334176236804 6 0.31707178598339464 1.4713930379211189 7 0.2025453238796247 1.0965794646310578 8 0.13423746101770556 0.8305840056884516 9 0.08544267811848083 0.5947537779257905 >10 0.3104516222520566 3.7607899410060113 >50 0.008074551402214691 0.4315631760178439 >100 0.0036761789980340005 0.5062884201517759 >500 6.734729865259279E-5 0.035858981726540444 >1k 2.6898124212668233E-5 0.026826439881839574 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1753773490210164E-5 2 0.0 1.5671697986946886E-5 0.0 3.9179244967367214E-6 1.1753773490210164E-5 3 7.835848993473443E-6 1.5671697986946886E-5 0.0 3.9179244967367214E-6 1.1753773490210164E-5 4 7.835848993473443E-6 5.093301845757738E-5 0.0 1.1753773490210164E-5 1.1753773490210164E-5 5 7.835848993473443E-6 5.876886745105082E-5 0.0 1.1753773490210164E-5 1.1753773490210164E-5 6 7.44405654379977E-5 5.876886745105082E-5 0.0 1.1753773490210164E-5 4.3097169464103934E-5 7 7.44405654379977E-5 5.876886745105082E-5 0.0 1.5671697986946886E-5 4.3097169464103934E-5 8 8.619433892820787E-5 7.44405654379977E-5 0.0 3.5261320470630495E-5 4.701509396084066E-5 9 8.619433892820787E-5 1.3320943288904852E-4 0.0 4.3097169464103934E-5 6.660471644452426E-5 10-11 1.1361981040536492E-4 1.3712735738578526E-4 0.0 9.403018792168131E-5 8.031745218310278E-5 12-13 1.1753773490210164E-4 1.3712735738578526E-4 0.0 1.1361981040536492E-4 9.598915017004967E-5 14-15 1.3320943288904852E-4 1.841424513466259E-4 0.0 1.351683951374169E-4 1.1753773490210164E-4 16-17 1.8218348909825754E-4 1.9197830034009935E-4 0.0 1.4104528188252198E-4 1.2145565939883837E-4 18-19 1.8610141359499428E-4 2.0373207383030952E-4 0.0 1.449632063792587E-4 1.2145565939883837E-4 20-21 1.9393726258846772E-4 2.1548584732051967E-4 0.0 1.6259386661457393E-4 1.2145565939883837E-4 22-23 2.1156792282378295E-4 2.6641886577809704E-4 0.0 2.1352688507215133E-4 1.292915083923118E-4 24-25 2.1156792282378295E-4 2.997212240003592E-4 0.0 2.546650922878869E-4 1.3908631963415363E-4 26-27 2.1156792282378295E-4 3.09516035242201E-4 0.0 3.565311292030417E-4 1.449632063792587E-4 28-29 2.1156792282378295E-4 3.1735188423567443E-4 0.0 7.992565973342912E-4 1.449632063792587E-4 30-31 2.1352688507215133E-4 3.604490536997784E-4 0.0 0.002730793374225495 1.4692216862762707E-4 32-33 2.1548584732051967E-4 3.604490536997784E-4 0.0 0.006580154192269324 1.7630660235315248E-4 34-35 2.1940377181725641E-4 4.152999966540925E-4 0.0 0.011242484343386022 1.9589622483683606E-4 36-37 2.1940377181725641E-4 4.7210990185677493E-4 0.0 0.019685611633853656 2.0373207383030952E-4 38-39 2.1940377181725641E-4 5.034532978306686E-4 0.0 0.04634904679639541 2.252806585623615E-4 40-41 2.1940377181725641E-4 5.543863162882461E-4 0.0 0.07795886163606729 2.3115754530746656E-4 42-43 2.1940377181725641E-4 5.91606599007245E-4 0.0 0.0951761808369768 2.350754698042033E-4 44-45 2.3115754530746656E-4 6.660471644452427E-4 0.0 0.114481753794647 2.566240545362553E-4 46-47 2.4291131879767674E-4 7.130622584060833E-4 0.0 0.13497641683707678 2.703367902748338E-4 48-49 2.4487028104604506E-4 7.1698018290282E-4 0.0 0.15438385583166214 2.958032995036225E-4 50-51 2.5858301678462366E-4 8.090514085761331E-4 0.0 0.17369922360057416 3.0168018624872757E-4 52-53 2.6250094128136035E-4 8.188462198179748E-4 0.0 0.22610342270667622 3.3694150671935804E-4 54-55 2.6250094128136035E-4 8.247231065630798E-4 0.0 0.28316995196389494 3.7807971393509363E-4 56-57 2.6250094128136035E-4 8.345179178049217E-4 0.0 0.3334271284457852 3.898334874253038E-4 58-59 2.6250094128136035E-4 8.521485780402369E-4 0.0 0.35820800088764493 3.976693364187772E-4 60-61 2.683778280264654E-4 8.658613137788154E-4 0.0 0.376661425267275 4.1138207215735573E-4 62-63 3.0168018624872757E-4 8.776150872690255E-4 0.0 0.39083255817197166 4.192179211508292E-4 64-65 3.0168018624872757E-4 9.559735772037601E-4 0.0 0.39721093925265905 4.192179211508292E-4 66-67 3.0559811074546426E-4 9.71645275190707E-4 0.0 0.40317206137444395 4.231358456475659E-4 68-69 3.0559811074546426E-4 0.0010167014069031792 0.0 0.40914885519421584 4.2705377014430265E-4 70-71 3.153929219873061E-4 0.0010304141426417577 0.0 0.41401491741916285 4.3097169464103934E-4 72-73 3.6632594044488345E-4 0.0010441268783803362 0.0 0.41758610559793835 4.623150906149331E-4 74-75 3.682849026932518E-4 0.0010852650855960719 0.0 0.42038742161310516 4.642740528633015E-4 76-77 3.7220282718998857E-4 0.0011479518775438595 0.0 0.4230320206484024 4.7994575085024836E-4 78-79 3.7612075168672526E-4 0.001167541500027543 0.0 0.4247323998799861 4.936584865888269E-4 80-81 3.7612075168672526E-4 0.0011714594245242798 0.0 0.425418036666915 4.99535373333932E-4 82-83 3.7612075168672526E-4 0.0011851721602628583 0.0 0.42592148996474577 5.21083958065984E-4 84-85 3.7612075168672526E-4 0.001226310367478594 0.0 0.42609975552934726 5.328377315561941E-4 86-87 3.8003867618346195E-4 0.001271366499191066 0.0 0.42617811401928196 5.328377315561941E-4 88 3.839566006801987E-4 0.0013947811208382729 0.0 0.4261839909060271 5.406735805496676E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 34015 0.0 49.732864 1 GTATCAA 64905 0.0 39.299046 1 TCAACGC 81020 0.0 30.788174 4 ATCAACG 81705 0.0 30.561344 3 CAACGCA 82570 0.0 30.194738 5 TATCAAC 84150 0.0 29.921497 2 AACGCAG 84855 0.0 29.50313 6 ACGCAGA 97405 0.0 25.623127 7 CGCAGAG 99765 0.0 25.038343 8 GTACATG 85685 0.0 22.254183 1 TACATGG 86020 0.0 21.751413 2 GCAGAGT 115850 0.0 21.514135 9 ACATGGG 86920 0.0 21.065369 3 AGAGTAC 104570 0.0 19.547365 10-11 CATGGGG 63085 0.0 19.264017 4 GAGTACT 65600 0.0 18.971073 12-13 CAGAGTA 113230 0.0 18.18967 10-11 AGTACTT 71715 0.0 17.641533 12-13 GTACTTT 74325 0.0 16.656368 14-15 ATGGGGG 37070 0.0 15.690382 5 >>END_MODULE