##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140259_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 24866247 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.348618832588606 33.0 31.0 34.0 31.0 34.0 2 32.39143892522261 34.0 31.0 34.0 30.0 34.0 3 32.48153217491968 34.0 31.0 34.0 31.0 34.0 4 36.04873184119823 37.0 35.0 37.0 35.0 37.0 5 35.978608311901674 37.0 35.0 37.0 35.0 37.0 6 36.058287324178835 37.0 35.0 37.0 35.0 37.0 7 35.995883737501686 37.0 35.0 37.0 35.0 37.0 8 35.998907474859394 37.0 35.0 37.0 35.0 37.0 9 37.6945864408087 39.0 37.0 39.0 35.0 39.0 10-11 37.63192105346657 39.0 37.0 39.0 35.0 39.0 12-13 37.61927045122651 39.0 37.0 39.0 35.0 39.0 14-15 39.001287226817944 40.0 38.0 41.0 35.0 41.0 16-17 38.99685493351691 40.0 38.0 41.0 35.0 41.0 18-19 39.02530767912022 40.0 38.5 41.0 35.0 41.0 20-21 39.036764485118354 40.0 39.0 41.0 35.0 41.0 22-23 38.99569022341261 40.0 38.5 41.0 35.0 41.0 24-25 38.95995169021032 40.0 38.0 41.0 35.0 41.0 26-27 38.85621861974985 40.0 38.0 41.0 35.0 41.0 28-29 38.79917443516449 40.0 38.0 41.0 35.0 41.0 30-31 38.69981748378501 40.0 38.0 41.0 34.5 41.0 32-33 38.603673386171494 40.0 38.0 41.0 34.0 41.0 34-35 38.55219092940279 40.0 38.0 41.0 34.0 41.0 36-37 38.482702310019704 40.0 38.0 41.0 34.0 41.0 38-39 38.427503920893216 40.0 38.0 41.0 34.0 41.0 40-41 38.375918807272534 40.0 38.0 41.0 34.0 41.0 42-43 38.3040817364316 40.0 38.0 41.0 33.0 41.0 44-45 38.24986701335855 40.0 38.0 41.0 33.0 41.0 46-47 38.16839972340568 40.0 37.5 41.0 33.0 41.0 48-49 38.07476393736591 40.0 37.0 41.0 33.0 41.0 50-51 37.9629430808217 40.0 37.0 41.0 33.0 41.0 52-53 37.85791927843512 40.0 37.0 41.0 33.0 41.0 54-55 37.70771567746071 40.0 36.5 41.0 33.0 41.0 56-57 37.54244920681664 39.0 36.0 41.0 32.0 41.0 58-59 37.35564847279532 39.0 35.5 41.0 32.0 41.0 60-61 37.147323932992265 39.0 35.0 41.0 32.0 41.0 62-63 36.88963499776514 38.5 35.0 40.0 31.0 41.0 64-65 36.6305171672119 38.0 35.0 40.0 31.0 41.0 66-67 36.358017108500235 37.0 35.0 40.0 31.0 41.0 68-69 36.038608328117675 37.0 34.5 39.5 31.0 41.0 70-71 35.717390749421256 36.0 34.0 39.0 30.5 41.0 72-73 35.39622450579816 36.0 34.0 39.0 30.0 40.5 74-75 35.078177306643305 35.0 34.0 38.5 30.0 40.0 76-77 34.7545684185484 35.0 34.0 37.0 30.0 39.5 78-79 34.440147649598636 35.0 34.0 37.0 29.5 39.0 80-81 34.16669606917009 35.0 34.0 36.0 29.0 39.0 82-83 33.893751830119875 35.0 33.0 36.0 29.0 37.5 84-85 33.681222129732184 35.0 33.0 35.5 29.0 37.0 86-87 33.48569781019192 35.0 33.0 35.0 29.0 37.0 88-89 33.360644245130715 35.0 33.0 35.0 29.0 36.0 90-91 33.237089011437774 35.0 33.0 35.0 29.0 36.0 92-93 33.12257662125282 35.0 33.0 35.0 29.0 36.0 94-95 33.35952790055366 35.0 33.0 35.0 29.5 36.0 96-97 33.42354359759818 35.0 33.0 35.0 30.0 35.0 98-99 33.76006642348372 35.0 34.0 35.0 31.0 35.0 100 33.57183380394164 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 17.0 20 119.0 21 731.0 22 3485.0 23 11921.0 24 30735.0 25 65947.0 26 118147.0 27 187302.0 28 267214.0 29 356261.0 30 453495.0 31 565301.0 32 708513.0 33 910538.0 34 1235962.0 35 1754652.0 36 2825953.0 37 5195150.0 38 6584873.0 39 3432998.0 40 156932.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.79711156251283 19.947955958130713 13.58206970275812 24.672862776598333 2 14.94019759493842 21.34350193258132 40.57599577643956 23.1403046960407 3 17.87029220774651 26.779549805002738 30.408786657672948 24.941371329577798 4 12.567095468809589 18.09064311152383 38.45929383714398 30.882967582522607 5 13.00753579532952 38.151748945740906 35.47426674535142 13.366448513578149 6 29.794757528146487 38.2503117579424 18.64964584321872 13.305284870692388 7 26.05912745900095 32.679076983350164 23.713401543867878 17.54839401378101 8 24.64083542643166 36.59977719999323 21.053333862564784 17.706053511010328 9 26.026975441850958 15.9571727892834 20.838142563290713 37.177709205574935 10-11 24.483027133125475 26.398543374880816 28.97122352239162 20.14720596960209 12-13 25.39979796709974 24.10299994204996 28.99396318230089 21.503238908549406 14-15 22.5279210811346 25.064363351654954 26.525928902741136 25.88178666446931 16-17 22.05817588798181 28.111302843569437 27.13093978355479 22.69958148489396 18-19 22.214299166255365 27.30698967158172 28.812029816964333 21.666681345198572 20-21 23.06300725088893 26.467802738000294 28.596438877888534 21.872751133222238 22-23 22.815749553641673 26.390391432655512 28.478702167442304 22.31515684626051 24-25 22.525304726953838 26.58770775964414 28.557969820327845 22.329017693074178 26-27 22.480265010133277 26.620776624413622 28.525015661029073 22.373942704424028 28-29 22.497797889288993 26.552406730316612 28.548392265319894 22.4014031150745 30-31 22.72531476309501 26.501429110315343 28.374660270386308 22.39859585620334 32-33 22.537125924413797 26.725127420585725 28.333902482289474 22.403844172711004 34-35 22.648337393421546 26.701910234876376 28.339554303746574 22.310198067955504 36-37 22.76332362602417 26.63262468917371 28.19195983231857 22.412091852483552 38-39 22.62473723187039 26.76376663467482 28.209482246837876 22.402013886616917 40-41 22.814145541665155 26.580080484362554 28.13918420131888 22.466589772653407 42-43 22.647231473545666 26.744377991342716 27.932653140219156 22.67573739489247 44-45 22.72512468594064 26.853465230755173 27.70002822840658 22.721381854897608 46-47 22.936976936506635 26.90924308186977 27.338776078981926 22.81500390264167 48-49 22.907216534509093 27.028320579261838 27.188673050755945 22.875789835473118 50-51 22.870341470500914 27.159383852850777 27.079328679201097 22.89094599744721 52-53 23.029556120654533 27.032676390205097 27.010909997246515 22.926857491893855 54-55 22.989004808407426 26.941129339845617 27.093482803906504 22.976383047840454 56-57 22.928350544964655 27.074749031798216 27.081254506809955 22.91564591642717 58-59 22.92659827939551 27.07899785063287 27.07497014767874 22.91943372229288 60-61 23.027233516397818 27.055390213478027 27.054917373580988 22.86245889654317 62-63 23.004835628651726 27.210591097795668 26.9849296327538 22.799643640798802 64-65 22.978163511548242 27.130651641404967 26.930415172712102 22.96076967433469 66-67 23.005846658669366 27.182007783348837 26.849071649078766 22.963073908903027 68-69 22.925311816944447 27.10252161855423 26.928192937658647 23.04397362684267 70-71 22.987993116434488 26.895114645661767 26.99105211447559 23.12584012342816 72-73 23.027305874332516 26.952119035577542 26.839587627695426 23.180987462394516 74-75 22.857597562652973 27.096811509070466 26.920993181865814 23.124597746410743 76-77 23.084954804948815 27.013430110742114 26.84569465835845 23.055920425950628 78-79 22.916950313618237 27.06233028018107 26.812799629717254 23.207919776483447 80-81 23.019598154657693 27.099176230033105 26.772843626539515 23.10838198876969 82-83 23.013231242271747 27.034265269835238 26.93668880534909 23.015814682543926 84-85 23.01236326813423 27.073912631062512 26.877339117641704 23.036384983161557 86-87 22.923343921985463 27.09457465190171 26.952056294408454 23.030025131704374 88-89 22.94434606436941 27.05537923931507 26.899498065650164 23.10077663066536 90-91 22.99973848585938 27.08196616317375 26.916901120076425 23.001394230890448 92-93 23.053280942245085 27.054431178136433 26.8867376173737 23.00555026224477 94-95 22.84613517282619 27.09588801837819 27.03309060589766 23.024886202897967 96-97 22.965758229762294 27.185016290617913 27.018235930488427 22.830989549131367 98-99 24.07427293397325 29.150813322900365 27.14995283285624 19.624960910270147 100 23.00037097831053 30.096080477882854 20.94655520714068 25.95699333666594 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8860.0 1 8871.5 2 10496.0 3 12111.5 4 15510.5 5 27589.0 6 37690.5 7 43081.0 8 44666.5 9 39756.0 10 31676.5 11 23150.5 12 22942.5 13 32809.0 14 60573.0 15 101334.5 16 133728.5 17 149387.5 18 150307.5 19 140443.0 20 123421.5 21 105078.5 22 94087.5 23 97612.0 24 114629.5 25 144011.0 26 182794.5 27 223925.0 28 267573.5 29 316832.0 30 363790.0 31 410315.5 32 460612.5 33 507923.5 34 556374.0 35 603444.5 36 653382.5 37 704452.5 38 749017.5 39 788409.0 40 824979.5 41 860788.0 42 891879.5 43 920760.0 44 952984.0 45 991873.5 46 1018602.5 47 1034865.5 48 1048489.5 49 1051671.0 50 1050419.5 51 1042257.5 52 1016555.5 53 970307.0 54 922275.5 55 871961.5 56 817022.0 57 756105.0 58 683055.5 59 601667.5 60 508926.5 61 419416.5 62 339396.0 63 266212.5 64 203497.0 65 154249.5 66 118234.5 67 89889.0 68 67959.0 69 51948.5 70 38862.5 71 28503.0 72 20821.0 73 14908.0 74 10464.0 75 7258.5 76 5077.0 77 3412.5 78 2371.5 79 1710.5 80 1189.5 81 817.0 82 600.5 83 413.5 84 295.5 85 225.0 86 167.5 87 124.5 88 90.5 89 66.5 90 46.0 91 32.5 92 25.5 93 14.0 94 6.5 95 5.5 96 5.0 97 4.5 98 2.0 99 1.5 100 3.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 9.24948585928548E-5 3 0.0 4 0.0 5 0.030390593321139293 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.1923397156298053E-4 24-25 9.254733046521108E-5 26-27 1.32839807952282E-4 28-29 1.2689072211294404E-4 30-31 2.017007447134386E-6 32-33 1.213177804208429E-5 34-35 1.8254117023412284E-5 36-37 5.804473913339856E-4 38-39 4.302089090365054E-5 40-41 0.0 42-43 6.233072792275743E-6 44-45 3.143474131984629E-5 46-47 6.3514385606082E-6 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 9.974884632340136E-5 70-71 9.136224123665681E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 5.134510306861955E-6 90-91 0.0 92-93 0.0 94-95 0.0012582298517196154 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 977.0 20-21 4344.0 22-23 6983.0 24-25 9036.0 26-27 14564.0 28-29 27379.0 30-31 57778.0 32-33 71682.0 34-35 93434.0 36-37 133113.0 38-39 166725.0 40-41 169845.0 42-43 194306.0 44-45 238866.0 46-47 232138.0 48-49 206972.0 50-51 176746.0 52-53 158737.0 54-55 169225.0 56-57 180609.0 58-59 190529.0 60-61 194130.0 62-63 178668.0 64-65 184595.0 66-67 199852.0 68-69 206694.0 70-71 212159.0 72-73 192764.0 74-75 190200.0 76-77 198656.0 78-79 217201.0 80-81 224058.0 82-83 213799.0 84-85 203925.0 86-87 212558.0 88-89 233689.0 90-91 254167.0 92-93 258653.0 94-95 298539.0 96-97 809822.0 98-99 1496591.0 100-101 1.6181539E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.08451566428947 #Duplication Level Percentage of deduplicated Percentage of total 1 86.32885777151976 67.40947046940452 2 8.714609185980942 13.609520749817793 3 2.4319099572583123 5.696835334550347 4 1.015870423317504 3.1729499992969603 5 0.5201434975704156 2.0307576541857713 6 0.3052234452265286 1.4299934933939562 7 0.17818951924401427 0.9739689614635011 8 0.12699383396124908 0.7933001613772264 9 0.08602120303870507 0.6045231578523111 >10 0.2822341512681997 3.390096892257589 >50 0.006259909384002713 0.3390950194839487 >100 0.0035938907095666565 0.4920385017306928 >500 6.66105807149686E-5 0.03404045671681038 >1k 2.6600940061765115E-5 0.0234091484685909 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.2279702682917934E-5 0.0 0.0 4.021515590993687E-6 3 8.043031181987374E-6 6.836576504689269E-5 0.0 0.0 4.021515590993687E-6 4 8.043031181987374E-6 1.7694668600372223E-4 0.0 0.0 4.021515590993687E-6 5 8.043031181987374E-6 1.890112327767033E-4 0.0 0.0 4.021515590993687E-6 6 2.815060913695581E-5 1.890112327767033E-4 0.0 8.043031181987374E-6 2.0107577954968435E-5 7 2.815060913695581E-5 1.9303274836769699E-4 0.0 8.043031181987374E-6 2.0107577954968435E-5 8 2.815060913695581E-5 2.0107577954968435E-4 0.0 8.043031181987374E-6 2.4129093545962123E-5 9 2.815060913695581E-5 3.820439811444003E-4 0.0 1.6086062363974748E-5 3.2172124727949495E-5 10-11 2.815060913695581E-5 3.820439811444003E-4 0.0 1.809682015947159E-5 3.2172124727949495E-5 12-13 3.0161366932452655E-5 3.9008701232638764E-4 0.0 2.0107577954968435E-5 3.2172124727949495E-5 14-15 3.2172124727949495E-5 4.88614144305733E-4 0.0 2.0107577954968435E-5 5.429046047841478E-5 16-17 3.820439811444003E-5 5.107324800561983E-4 0.0 2.0107577954968435E-5 7.238728063788637E-5 18-19 4.021515590993687E-5 5.449153625796446E-4 0.0 2.0107577954968435E-5 8.445182741086744E-5 20-21 4.021515590993687E-5 5.811090028985878E-4 0.0 2.0107577954968435E-5 8.445182741086744E-5 22-23 4.021515590993687E-5 6.353994633770026E-4 0.0 3.619364031894318E-5 1.0455940536583587E-4 24-25 4.222591370543371E-5 7.077867440148889E-4 0.0 7.037652284238953E-5 1.3472077229828854E-4 26-27 4.423667150093056E-5 7.439803843338321E-4 0.0 1.9102199057220015E-4 1.3673153009378537E-4 28-29 4.423667150093056E-5 7.480018999248258E-4 0.0 5.52958393761632E-4 1.3673153009378537E-4 30-31 4.423667150093056E-5 8.445182741086743E-4 0.0 0.002095209622907711 1.387422878892822E-4 32-33 4.423667150093056E-5 8.525613052906616E-4 0.0 0.005336551189248623 1.4477456127577273E-4 34-35 4.423667150093056E-5 9.973358665664343E-4 0.0 0.009341980717878335 1.5281759245776012E-4 36-37 4.423667150093056E-5 0.0011441211856377039 0.0 0.016331374815025362 1.5281759245776012E-4 38-39 4.423667150093056E-5 0.0011863470993431378 0.0 0.035499928879496774 1.5482835025325696E-4 40-41 4.423667150093056E-5 0.0013311216606189105 0.0 0.05700096198674452 1.5884986584425065E-4 42-43 4.423667150093056E-5 0.001377369089915338 0.0 0.0693791869758231 1.6086062363974748E-4 44-45 4.423667150093056E-5 0.0015502942603280664 0.0 0.08323934046018283 1.6488213923074118E-4 46-47 4.423667150093056E-5 0.0016809935170353611 0.0 0.09770674279878262 1.6890365482173487E-4 48-49 4.423667150093056E-5 0.0016890365482173486 0.0 0.11089932469503741 1.890112327767033E-4 50-51 4.423667150093056E-5 0.0019343489992679635 0.0 0.12376013155503522 1.890112327767033E-4 52-53 4.423667150093056E-5 0.001954456577222932 0.0 0.15324186235260995 2.0509729514067804E-4 54-55 4.423667150093056E-5 0.001998693248723863 0.0 0.18412308057585047 2.2520487309564646E-4 56-57 4.423667150093056E-5 0.0020389084046337994 0.0 0.2135284025771963 2.352586620731307E-4 58-59 4.423667150093056E-5 0.0020489621936112838 0.0 0.23502943568444407 2.4129093545962124E-4 60-61 4.6247429296427406E-5 0.002085155833930227 0.0 0.2456381938134854 2.4330169325511807E-4 62-63 4.8258187091924247E-5 0.0021253709898401635 0.0 0.25854926961837066 2.533554822326023E-4 64-65 4.8258187091924247E-5 0.002370683440890779 0.0 0.2646961561992045 2.553662400280991E-4 66-67 4.8258187091924247E-5 0.00238878026105025 0.0 0.2699784169279747 2.6139851341458963E-4 68-69 4.8258187091924247E-5 0.002443070721528665 0.0 0.2752325270476079 2.6542002900558335E-4 70-71 4.8258187091924247E-5 0.002487307393029595 0.0 0.2798291193681137 2.714523023920739E-4 72-73 4.8258187091924247E-5 0.0025114364865755578 0.0 0.28361537629703426 3.136782160975076E-4 74-75 4.8258187091924247E-5 0.0025838237672134437 0.0 0.28644049099970736 3.1568897389300444E-4 76-77 4.8258187091924247E-5 0.002724576812898223 0.0 0.2892535411556074 3.176997316885013E-4 78-79 4.8258187091924247E-5 0.0027828887889676315 0.0 0.2911597395457384 3.176997316885013E-4 80-81 4.8258187091924247E-5 0.0027969640935361093 0.0 0.29187556932093534 3.337857940524761E-4 82-83 4.8258187091924247E-5 0.0028110393981045875 0.0 0.2923139145203536 3.619364031894318E-4 84-85 4.8258187091924247E-5 0.0028512545540145245 0.0 0.29249287196415286 3.659579187804255E-4 86-87 4.8258187091924247E-5 0.002905545014492939 0.0 0.2925632484869952 3.6997943437141925E-4 88 4.8258187091924247E-5 0.0030362442712002337 0.0 0.2925733022759727 3.8606549673539397E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 33830 0.0 50.385193 1 GTATCAA 60535 0.0 36.754715 1 TCAACGC 76035 0.0 28.591116 4 ATCAACG 76890 0.0 28.26213 3 CAACGCA 77920 0.0 27.883085 5 TATCAAC 79240 0.0 27.76737 2 AACGCAG 79980 0.0 27.241152 6 ACGCAGA 92755 0.0 23.448029 7 CGCAGAG 95590 0.0 22.770395 8 GTACATG 79365 0.0 22.211054 1 TACATGG 80920 0.0 21.369144 2 ACATGGG 81525 0.0 20.673391 3 GCAGAGT 109625 0.0 19.727215 9 CATGGGG 59760 0.0 18.718847 4 AGAGTAC 98600 0.0 18.665483 10-11 GAGTACT 63850 0.0 18.316263 12-13 CAGAGTA 106510 0.0 17.788086 10-11 GTGGTAT 15085 0.0 17.221252 1 AGTACTT 70010 0.0 16.677343 12-13 GTACTTT 72290 0.0 16.116941 14-15 >>END_MODULE