##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140258_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 24963512 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.34326259862795 33.0 31.0 34.0 31.0 34.0 2 32.3862516219673 34.0 31.0 34.0 30.0 34.0 3 32.4717506094495 34.0 31.0 34.0 31.0 34.0 4 36.04622242255016 37.0 35.0 37.0 35.0 37.0 5 35.9771706801511 37.0 35.0 37.0 35.0 37.0 6 36.057371775253415 37.0 35.0 37.0 35.0 37.0 7 35.99715933399115 37.0 35.0 37.0 35.0 37.0 8 35.99990349915509 37.0 35.0 37.0 35.0 37.0 9 37.694114634190896 39.0 37.0 39.0 35.0 39.0 10-11 37.631550140060426 39.0 37.0 39.0 35.0 39.0 12-13 37.61925393350102 39.0 37.0 39.0 35.0 39.0 14-15 38.995010537780104 40.0 38.0 41.0 35.0 41.0 16-17 38.992623173374 40.0 38.0 41.0 35.0 41.0 18-19 39.02790799227288 40.0 38.5 41.0 35.0 41.0 20-21 39.0395802733209 40.0 39.0 41.0 35.0 41.0 22-23 38.99816859220872 40.0 38.5 41.0 35.0 41.0 24-25 38.96023444281059 40.0 38.0 41.0 35.0 41.0 26-27 38.85617605658407 40.0 38.0 41.0 35.0 41.0 28-29 38.7988065499342 40.0 38.0 41.0 35.0 41.0 30-31 38.69444843873981 40.0 38.0 41.0 34.5 41.0 32-33 38.59107809492406 40.0 38.0 41.0 34.0 41.0 34-35 38.53766912121719 40.0 38.0 41.0 34.0 41.0 36-37 38.46561535379825 40.0 38.0 41.0 34.0 41.0 38-39 38.40740111241627 40.0 38.0 41.0 34.0 41.0 40-41 38.34605960074663 40.0 38.0 41.0 34.0 41.0 42-43 38.27189556174857 40.0 38.0 41.0 33.0 41.0 44-45 38.21141584150169 40.0 38.0 41.0 33.0 41.0 46-47 38.12800965242061 40.0 37.0 41.0 33.0 41.0 48-49 38.02736463980247 40.0 37.0 41.0 33.0 41.0 50-51 37.9093096722099 40.0 37.0 41.0 33.0 41.0 52-53 37.80073039116461 40.0 37.0 41.0 33.0 41.0 54-55 37.648489917337436 40.0 36.0 41.0 32.5 41.0 56-57 37.48132456164582 39.0 36.0 41.0 32.0 41.0 58-59 37.28674669109799 39.0 35.0 41.0 32.0 41.0 60-61 37.07216056143747 39.0 35.0 40.5 32.0 41.0 62-63 36.80956579223485 38.0 35.0 40.0 31.0 41.0 64-65 36.54489248540914 38.0 35.0 40.0 31.0 41.0 66-67 36.25855842834697 37.0 35.0 40.0 31.0 41.0 68-69 35.94840903710015 37.0 34.5 39.5 31.0 41.0 70-71 35.62930699404407 36.0 34.0 39.0 30.0 41.0 72-73 35.311448302794204 36.0 34.0 39.0 30.0 40.0 74-75 35.005187043024755 35.0 34.0 38.0 30.0 40.0 76-77 34.68545039622687 35.0 34.0 37.0 30.0 39.0 78-79 34.3847123356632 35.0 34.0 37.0 29.5 39.0 80-81 34.12511760149869 35.0 33.5 36.0 29.0 39.0 82-83 33.8568758545905 35.0 33.0 36.0 29.0 37.0 84-85 33.65156120808166 35.0 33.0 35.5 29.0 37.0 86-87 33.46534983806791 35.0 33.0 35.0 29.0 36.5 88-89 33.34234840076589 35.0 33.0 35.0 29.0 36.0 90-91 33.22231896957623 35.0 33.0 35.0 29.0 36.0 92-93 33.09848789777753 35.0 33.0 35.0 29.0 36.0 94-95 33.34233149086823 35.0 33.0 35.0 29.5 35.5 96-97 33.41656522486822 35.0 33.0 35.0 30.0 35.0 98-99 33.75766793602779 35.0 34.0 35.0 31.0 35.0 100 33.56719428274895 35.0 33.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 23.0 20 130.0 21 732.0 22 3456.0 23 11571.0 24 30855.0 25 66132.0 26 118482.0 27 187695.0 28 268931.0 29 358384.0 30 457169.0 31 573009.0 32 718711.0 33 922741.0 34 1258600.0 35 1799230.0 36 2945362.0 37 5317354.0 38 6443943.0 39 3324212.0 40 156790.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 42.01327120959583 19.86260186467353 13.663422037732511 24.46070488799813 2 15.104016697663933 21.66693666094471 40.048451554774466 23.18059508661689 3 17.789355920753458 26.963469723330597 30.54749668235783 24.699677673558114 4 12.601676398737485 18.420060446623054 38.28247403650576 30.6957891181337 5 13.115709952053239 38.08117990984463 35.32764020234971 13.475469935752423 6 29.601584104031513 38.16585983574747 18.743364315085152 13.489191745135862 7 26.099644953802976 32.809818586423255 23.615751661865524 17.474784797908242 8 25.087928333160814 35.967643495033876 20.88081997436899 18.063608197436324 9 26.265839518093447 15.827212132651846 20.765026972166417 37.14192137708829 10-11 24.53513151514899 26.416865944182856 28.686678781415047 20.361323759253107 12-13 25.62212400242402 24.301450452965113 28.57191528179208 21.50451026281879 14-15 22.74715793194483 25.052094032281996 26.44256545313015 25.75818258264302 16-17 22.065697326562063 28.154087453720457 26.926577878945878 22.853637340771606 18-19 22.254961561498238 27.197190843980607 28.680053111116738 21.867794483404417 20-21 23.337172469040322 26.21028471064856 28.600430622309545 21.85211219800157 22-23 23.098750620630618 26.186552978584192 28.39118359322518 22.32351280756001 24-25 22.736310670894966 26.38609968351894 28.565165599438224 22.31242404614788 26-27 22.572180140548863 26.405948240280242 28.566266520920962 22.455605098249933 28-29 22.691478383118536 26.387990423229375 28.52931550302192 22.391215690630176 30-31 23.023512685734087 26.14002516979 28.417994033074496 22.418468111401417 32-33 22.822188096329004 26.361865153490992 28.311146915326944 22.504799834853053 34-35 22.960327323044037 26.38148019194381 28.26752095338786 22.390671531624296 36-37 23.113410378298298 26.253256608871787 28.102494396971395 22.530838615858517 38-39 22.818262824113482 26.53998594854723 28.118163686957885 22.5235875403814 40-41 22.94009790740043 26.324135628385935 28.112832709466 22.622933754747635 42-43 22.778835786969452 26.563667557298597 27.78074103143167 22.87675562430028 44-45 22.850033997951247 26.60061738316135 27.596388186320258 22.952960432567142 46-47 23.05820138726116 26.659012319892582 27.261266997687926 23.02151929515833 48-49 23.217283087514257 26.898829277083685 26.924499116172022 22.959388519230036 50-51 23.165432640231014 26.943382700629247 26.884097716815 23.00708694232474 52-53 23.39055981022283 26.78067213095277 26.797459491143737 23.03130856768066 54-55 23.36379341005402 26.757023562192632 26.800472329798797 23.078710697954556 56-57 23.304405457315575 26.98710796134451 26.69571891458158 23.012767666758336 58-59 23.19570102254343 26.903110101261817 26.859329677906942 23.04185919828781 60-61 23.298263005186058 26.8860456674304 26.73439400619873 23.081297321184813 62-63 23.290019127343488 26.92166088621379 26.864138198584403 22.924181787858323 64-65 23.444793880261336 26.766331895965827 26.74456790070629 23.04430632306655 66-67 23.411953001391275 26.930569752916107 26.57868259483106 23.078794650861557 68-69 23.34764082334003 26.809649822351833 26.651844852095312 23.190864502212825 70-71 23.37749457483084 26.67021463118967 26.674425402271922 23.277865391707564 72-73 23.349139051181254 26.78910104811458 26.502790841351626 23.358969059352535 74-75 23.15808333836394 26.85857188441578 26.622650898022393 23.360693879197882 76-77 23.35950325471004 26.874332255465365 26.543570887852397 23.222593601972196 78-79 23.165856208075887 26.914553273291343 26.569772573665457 23.34981794496732 80-81 23.292569117222197 26.830802658256413 26.634780046958724 23.241848177562662 82-83 23.38053014237914 26.723380170281974 26.822165574403474 23.073924112935412 84-85 23.282984367457637 26.774284931262798 26.759022146536378 23.18370855474319 86-87 23.186133163772656 26.981718276217215 26.644335298034598 23.187813261975535 88-89 23.371430403173925 26.774781055640045 26.525803521143885 23.327985020042146 90-91 23.392144255871035 26.82463850536393 26.59148947000123 23.19172776876381 92-93 23.415661019041657 26.86862011876433 26.674042926128443 23.04167593606557 94-95 23.06273198975716 27.00196755172504 26.75965784514098 23.17564261337682 96-97 23.19712402343352 27.0735072294645 26.755298877354306 22.974069869747673 98-99 24.410182575933188 29.00837263989003 26.835483111822484 19.745961672354298 100 23.231179085354945 29.99814697490109 20.767949801815053 26.00272413792891 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5971.0 1 6105.5 2 9564.0 3 12945.0 4 16099.5 5 27536.0 6 37518.0 7 43696.5 8 46601.5 9 42828.5 10 34864.5 11 25904.0 12 25514.0 13 35861.0 14 66159.5 15 111142.0 16 147578.0 17 167086.0 18 170058.0 19 158110.5 20 136707.0 21 113422.0 22 98063.5 23 99252.0 24 115306.0 25 144994.0 26 184294.5 27 224417.0 28 267207.0 29 315946.5 30 360359.5 31 402380.0 32 449817.5 33 496905.0 34 542191.5 35 584807.5 36 632950.0 37 679340.5 38 713138.0 39 746114.5 40 782206.5 41 812855.0 42 832466.0 43 854638.0 44 887574.0 45 933670.5 46 978390.0 47 1028280.0 48 1065125.0 49 1071330.0 50 1073610.0 51 1080959.5 52 1046034.0 53 978136.5 54 935397.0 55 897421.5 56 851397.0 57 790863.0 58 720572.5 59 637379.5 60 540446.5 61 459397.5 62 379285.0 63 304242.0 64 249084.5 65 192424.0 66 147213.0 67 110161.5 68 76263.0 69 56589.5 70 42997.5 71 31117.5 72 22888.5 73 16836.5 74 12307.5 75 8723.0 76 5852.0 77 3805.5 78 2724.0 79 2160.0 80 1627.0 81 1191.0 82 928.0 83 582.5 84 319.0 85 204.0 86 140.5 87 102.0 88 66.5 89 46.5 90 30.5 91 22.5 92 18.5 93 8.5 94 1.0 95 0.0 96 0.0 97 0.0 98 1.5 99 3.0 100 3.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 8.011693226497938E-5 3 0.0 4 0.0 5 0.030873059848309806 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 4.006124162006459E-6 22-23 1.9834495758332978E-4 24-25 8.016231265065505E-5 26-27 1.5838702820664463E-4 28-29 1.1837228557301856E-4 30-31 2.009146963012629E-6 32-33 2.8195812019649096E-5 34-35 1.818146777534833E-5 36-37 5.497211970282518E-4 38-39 5.917170870836975E-5 40-41 0.0 42-43 2.069792963370398E-6 44-45 3.341834054086874E-5 46-47 4.222155910917999E-6 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 9.267100685149189E-5 70-71 8.421535072266478E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 5.1247868953459325E-6 90-91 0.0 92-93 0.0 94-95 0.0011676412072098485 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1074.0 20-21 4206.0 22-23 6915.0 24-25 9467.0 26-27 14496.0 28-29 27694.0 30-31 56507.0 32-33 71368.0 34-35 93021.0 36-37 131776.0 38-39 171789.0 40-41 171080.0 42-43 204310.0 44-45 252346.0 46-47 243434.0 48-49 213555.0 50-51 185352.0 52-53 169373.0 54-55 175601.0 56-57 184489.0 58-59 192418.0 60-61 192397.0 62-63 178575.0 64-65 184424.0 66-67 195603.0 68-69 205296.0 70-71 208772.0 72-73 191379.0 74-75 190265.0 76-77 198214.0 78-79 213936.0 80-81 223274.0 82-83 212440.0 84-85 205528.0 86-87 213463.0 88-89 233783.0 90-91 252475.0 92-93 258023.0 94-95 297465.0 96-97 803509.0 98-99 1496901.0 100-101 1.6227519E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.11519058482351 #Duplication Level Percentage of deduplicated Percentage of total 1 86.72444014393557 68.61220610349582 2 8.62982189636675 13.65500008088277 3 2.348008249695888 5.572893605082842 4 0.9749880249747584 3.0854545365519472 5 0.4569552991839911 1.8076052791843253 6 0.27509989529205847 1.3058748387537722 7 0.15792363861344896 0.8745911136726267 8 0.1064632509172787 0.6738288309280314 9 0.06702226984261832 0.47722316868235964 >10 0.25013049428516243 3.1045412188742896 >50 0.005892955077471638 0.3198647468412857 >100 0.003165850479890328 0.44852114464625953 >500 6.293720850061887E-5 0.03159299069740041 >1k 2.5094126598186443E-5 0.030802341706156644 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.0058466132489695E-6 2 0.0 6.809939242523247E-5 0.0 0.0 4.0058466132489695E-6 3 0.0 6.809939242523247E-5 0.0 0.0 4.0058466132489695E-6 4 0.0 1.161695517842201E-4 0.0 0.0 8.011693226497939E-6 5 0.0 1.161695517842201E-4 0.0 4.0058466132489695E-6 8.011693226497939E-6 6 0.0 1.161695517842201E-4 0.0 4.0058466132489695E-6 1.2017539839746907E-5 7 0.0 1.161695517842201E-4 0.0 4.0058466132489695E-6 1.2017539839746907E-5 8 0.0 1.3619878485046495E-4 0.0 1.2017539839746907E-5 1.2017539839746907E-5 9 4.0058466132489695E-6 2.6038002986118297E-4 0.0 1.2017539839746907E-5 1.6023386452995878E-5 10-11 4.0058466132489695E-6 2.6038002986118297E-4 0.0 1.6023386452995878E-5 1.6023386452995878E-5 12-13 4.0058466132489695E-6 2.6038002986118297E-4 0.0 1.6023386452995878E-5 2.2032156372869333E-5 14-15 8.011693226497939E-6 3.605261951924072E-4 0.0 1.6023386452995878E-5 3.004384959936727E-5 16-17 1.6023386452995878E-5 3.645320418056562E-4 0.0 1.6023386452995878E-5 3.6052619519240724E-5 18-19 1.6023386452995878E-5 3.9457589140502345E-4 0.0 2.60380029861183E-5 3.8055542825865204E-5 20-21 2.4035079679493814E-5 4.3062851092426417E-4 0.0 3.404969621261624E-5 4.406431274573866E-5 22-23 2.4035079679493814E-5 4.887132868163742E-4 0.0 3.6052619519240724E-5 5.808477589211005E-5 24-25 2.4035079679493814E-5 5.608185258548557E-4 0.0 3.8055542825865204E-5 6.6096469118608E-5 26-27 2.4035079679493814E-5 5.968711453740965E-4 0.0 6.209062250535902E-5 7.210523903848143E-5 28-29 2.8040926292742785E-5 5.968711453740965E-4 0.0 2.0429817727569743E-4 8.211985557160387E-5 30-31 3.8055542825865204E-5 6.409354581198351E-4 0.0 7.791371662769245E-4 8.412277887822836E-5 32-33 4.606723605236314E-5 6.429383814264596E-4 0.0 0.0020109349998509826 8.412277887822836E-5 34-35 4.807015935898763E-5 7.771342429703E-4 0.0 0.003547177176031962 8.412277887822836E-5 36-37 4.807015935898763E-5 9.113301045141405E-4 0.0 0.00582850682227725 8.412277887822836E-5 38-39 4.807015935898763E-5 9.794294969393729E-4 0.0 0.00986640020843221 9.01315487981018E-5 40-41 4.807015935898763E-5 0.0010976019720302175 0.0 0.014354951338577681 9.614031871797525E-5 42-43 4.807015935898763E-5 0.0011556867479223275 0.0 0.018342771642067032 9.614031871797525E-5 44-45 4.807015935898763E-5 0.0012918855327727925 0.0 0.022915445551090728 1.041520119444732E-4 46-47 4.807015935898763E-5 0.0013780112349576453 0.0 0.02797082397701093 1.0815785855772216E-4 48-49 4.807015935898763E-5 0.00138001415826427 0.0 0.03324652396665982 1.2418124501071805E-4 50-51 4.807015935898763E-5 0.0015522655626339756 0.0 0.038624373044946564 1.2418124501071805E-4 52-53 4.807015935898763E-5 0.001558274332553849 0.0 0.0439201022676617 1.3820170815708943E-4 54-55 4.807015935898763E-5 0.0015722947957002202 0.0 0.04872311235694721 1.5823094122333428E-4 56-57 5.0073082665612114E-5 0.0016143561851393346 0.0 0.05368835923406931 1.702484810630812E-4 58-59 5.20760059722366E-5 0.0016223678783658325 0.0 0.05877778735620212 1.7625725098295464E-4 60-61 5.20760059722366E-5 0.001662426344498322 0.0 0.06429984691256582 1.802630975962036E-4 62-63 5.20760059722366E-5 0.0016964760407109382 0.0 0.06948341243011 1.922806374359505E-4 64-65 5.20760059722366E-5 0.0019147946811330072 0.0 0.07428041374947564 1.922806374359505E-4 66-67 5.20760059722366E-5 0.0019288151442793788 0.0 0.07891117243439144 1.94283560742575E-4 68-69 5.20760059722366E-5 0.0020109349998509826 0.0 0.08369014744399747 1.9828940735582397E-4 70-71 5.20760059722366E-5 0.0020509934659834724 0.0 0.08812662256817069 2.103069471955709E-4 72-73 5.407892927886109E-5 0.0020630110058232195 0.0 0.09161571496831054 2.2833325695519125E-4 74-75 5.608185258548557E-5 0.00211708993510208 0.0 0.09426157665636149 2.303361802618157E-4 76-77 5.608185258548557E-5 0.002229253640273051 0.0 0.09674720447988247 2.323391035684402E-4 78-79 6.209062250535902E-5 0.0022753208763254145 0.0 0.09845369513712654 2.3634495018168917E-4 80-81 6.409354581198351E-5 0.002277323799632039 0.0 0.09913468906137887 2.523683366346851E-4 82-83 6.409354581198351E-5 0.0022813296462452877 0.0 0.09960537603843561 2.8040926292742784E-4 84-85 6.409354581198351E-5 0.0023013588793115328 0.0 0.0997836362127252 2.884209561539258E-4 86-87 6.409354581198351E-5 0.0023694582717367655 0.0 0.09984372391192392 2.9242680276717476E-4 88 6.409354581198351E-5 0.0025397067527998464 0.0 0.0998497326818438 3.0043849599367266E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 37590 0.0 54.596527 1 GTATCAA 71060 0.0 38.46418 1 TCAACGC 90770 0.0 29.489792 4 ATCAACG 91765 0.0 29.2163 3 TATCAAC 92855 0.0 29.056343 2 CAACGCA 92595 0.0 28.876469 5 AACGCAG 94915 0.0 28.23016 6 ACGCAGA 108175 0.0 24.75011 7 CGCAGAG 116560 0.0 22.966015 8 GTACATG 94220 0.0 22.227913 1 TACATGG 95875 0.0 21.565239 2 ACATGGG 96235 0.0 20.884504 3 GCAGAGT 127885 0.0 20.82603 9 TATATAC 30255 0.0 20.066324 3 ATACAAC 23300 0.0 20.055973 6 GAGTACT 71725 0.0 19.448025 12-13 GTGGTAT 15345 0.0 19.25631 1 AGAGTAC 115390 0.0 19.165653 10-11 TATACAA 28065 0.0 18.833597 5 CAGAGTA 123335 0.0 18.784489 10-11 >>END_MODULE