##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140257_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23182519 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.40315666300112 34.0 31.0 34.0 31.0 34.0 2 32.44718626133769 34.0 31.0 34.0 31.0 34.0 3 32.53080487068726 34.0 31.0 34.0 31.0 34.0 4 36.087301686240394 37.0 35.0 37.0 35.0 37.0 5 36.02149408353769 37.0 35.0 37.0 35.0 37.0 6 36.098089297371004 37.0 35.0 37.0 35.0 37.0 7 36.03830317145432 37.0 35.0 37.0 35.0 37.0 8 36.03941564762656 37.0 35.0 37.0 35.0 37.0 9 37.73887617648453 39.0 38.0 39.0 35.0 39.0 10-11 37.67763373773144 39.0 37.5 39.0 35.0 39.0 12-13 37.665263813652004 39.0 37.0 39.0 35.0 39.0 14-15 39.046677563383 40.0 38.0 41.0 36.0 41.0 16-17 39.04481150214953 40.0 38.0 41.0 36.0 41.0 18-19 39.08413030956645 40.0 38.5 41.0 36.0 41.0 20-21 39.09855429165789 40.0 39.0 41.0 35.0 41.0 22-23 39.05770286711769 40.0 39.0 41.0 35.0 41.0 24-25 39.02024152236969 40.0 38.5 41.0 35.0 41.0 26-27 38.91635698434888 40.0 38.0 41.0 35.0 41.0 28-29 38.85995136026716 40.0 38.0 41.0 35.0 41.0 30-31 38.75524989645309 40.0 38.0 41.0 35.0 41.0 32-33 38.651411104129565 40.0 38.0 41.0 34.0 41.0 34-35 38.60052002503518 40.0 38.0 41.0 34.0 41.0 36-37 38.53553401492264 40.0 38.0 41.0 34.0 41.0 38-39 38.48590354317834 40.0 38.0 41.0 34.0 41.0 40-41 38.43756313947763 40.0 38.0 41.0 34.0 41.0 42-43 38.372907994662526 40.0 38.0 41.0 34.0 41.0 44-45 38.32240145554875 40.0 38.0 41.0 33.5 41.0 46-47 38.24985059212757 40.0 38.0 41.0 33.0 41.0 48-49 38.16348400499857 40.0 37.5 41.0 33.0 41.0 50-51 38.06450888742884 40.0 37.0 41.0 33.0 41.0 52-53 37.97085353894667 40.0 37.0 41.0 33.0 41.0 54-55 37.83487742101873 40.0 37.0 41.0 33.0 41.0 56-57 37.68233397602657 39.5 36.0 41.0 33.0 41.0 58-59 37.50607778555856 39.0 36.0 41.0 32.0 41.0 60-61 37.312168801262494 39.0 35.5 41.0 32.0 41.0 62-63 37.06721961161011 39.0 35.0 40.5 32.0 41.0 64-65 36.81888632959759 38.0 35.0 40.0 31.0 41.0 66-67 36.56231935761994 37.5 35.0 40.0 31.0 41.0 68-69 36.253397883078875 37.0 35.0 40.0 31.0 41.0 70-71 35.94196240446893 36.5 34.5 39.0 31.0 41.0 72-73 35.62402581290806 36.0 34.0 39.0 30.5 41.0 74-75 35.311061478607826 36.0 34.0 39.0 30.0 40.0 76-77 34.98483092696134 35.0 34.0 37.5 30.0 40.0 78-79 34.66238719073773 35.0 34.0 37.0 30.0 39.0 80-81 34.378932213278524 35.0 34.0 37.0 30.0 39.0 82-83 34.0931080651996 35.0 34.0 36.0 29.5 38.5 84-85 33.86682832509295 35.0 33.0 36.0 29.0 37.0 86-87 33.65531770463106 35.0 33.0 35.5 29.0 37.0 88-89 33.514801423800485 35.0 33.0 35.0 29.0 36.5 90-91 33.378600224128355 35.0 33.0 35.0 29.0 36.0 92-93 33.25329380887019 35.0 33.0 35.0 29.0 36.0 94-95 33.474016181471576 35.0 33.0 35.0 30.0 36.0 96-97 33.52476476734145 35.0 34.0 35.0 30.0 35.5 98-99 33.84255379965766 35.0 34.0 35.0 31.0 35.0 100 33.65533187072199 35.0 34.0 35.0 30.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 5.0 19 22.0 20 92.0 21 652.0 22 2887.0 23 10047.0 24 26430.0 25 56689.0 26 102142.0 27 162926.0 28 234299.0 29 314201.0 30 403160.0 31 504474.0 32 633458.0 33 816618.0 34 1112069.0 35 1576934.0 36 2525628.0 37 4707942.0 38 6249574.0 39 3570323.0 40 171946.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.591601844476 20.421663409399123 13.963586096920702 24.02314864920417 2 14.596599718882716 21.593754252939558 41.110803647320964 22.698842380856764 3 17.351009180667553 27.663016258069277 30.90465276875218 24.081321792510987 4 12.125015404926446 18.629248184806837 39.50465434752798 29.741082062738737 5 12.439952560095335 38.67921564850631 35.92617456093364 12.954657230464717 6 28.678328701035465 39.18494793426029 19.06858784414239 13.068135520561853 7 25.301508434005815 33.29934939339422 24.27240542755513 17.12673674504483 8 24.39923806381869 36.67369365684549 21.314318776143352 17.61274950319247 9 25.909069674438744 16.06321124982147 21.263474430884756 36.76424464485503 10-11 23.96508334577446 26.725331272240087 29.388264493603995 19.92132088838146 12-13 25.175719687752657 24.56585283074717 29.3633232868266 20.895104194673582 14-15 22.27839865029335 25.501648461929438 27.160253810209323 25.05969907756789 16-17 21.452573812190128 28.516266933718466 27.7594660873566 22.271693166734817 18-19 21.534275459884235 27.652650689081714 29.70453512838704 21.10853872264701 20-21 22.521123562216033 26.713451705634956 29.521882718880033 21.24354201326898 22-23 22.275632154081563 26.63190628417704 29.38418962941843 21.70827193232297 24-25 21.913811917770317 26.861061692546322 29.46283124845987 21.76229514122349 26-27 21.895544240940364 26.917547405672366 29.38599432296458 21.80091403042269 28-29 21.88751769742964 26.880844904944308 29.468447316699137 21.76319008092692 30-31 22.165857179843915 26.82294228940134 29.264013808971352 21.747186721783397 32-33 21.92712339626682 27.067821480752595 29.196913317023498 21.808141805957085 34-35 22.06810692264613 27.05974259840238 29.206722229729543 21.665428249221947 36-37 22.13145365384768 26.977220829769603 29.048816742991075 21.84250877339164 38-39 22.031950307295727 27.10244368005074 29.087480909866848 21.778125102786678 40-41 22.221905708595436 26.932731716054615 28.972538391009262 21.87282418434069 42-43 22.1205264569345 27.13000062285358 28.6288057180282 22.12066720218372 44-45 22.18830710693297 27.299545435120177 28.40514852543519 22.10699893251167 46-47 22.378043657016633 27.334629409472626 27.9621637851104 22.325163148400335 48-49 22.39949005571068 27.458468094221505 27.754640315335006 22.38740153473281 50-51 22.388918682005258 27.58565850482596 27.580296906916264 22.44512590625252 52-53 22.508021033521135 27.52704233823591 27.500837426990977 22.464099201251983 54-55 22.471748193318366 27.41862607375006 27.581509861544646 22.528115871386927 56-57 22.469601320302505 27.52843346202672 27.571073090980292 22.430892126690477 58-59 22.44450158385847 27.557685150904383 27.598709831290652 22.399103433946497 60-61 22.56461636223491 27.605917155321997 27.49097878721148 22.33848769523161 62-63 22.525863295044545 27.629395109329735 27.504068948729387 22.340672646896326 64-65 22.464200872397203 27.5212124061469 27.511174496916873 22.50341222453902 66-67 22.54729433996863 27.596006799029084 27.367841898994378 22.48885696200791 68-69 22.421050849501896 27.54105510096832 27.480924499606207 22.556969549923576 70-71 22.468621716124964 27.29458346970422 27.57427190082745 22.662522913343363 72-73 22.535426032963375 27.40505872181074 27.44143978644052 22.618075458785366 74-75 22.362852374092654 27.631285102694868 27.466943843467128 22.538918679745347 76-77 22.55147951878375 27.499111761114552 27.43707668951873 22.512332030582968 78-79 22.447168750249475 27.465400367726435 27.408462893685986 22.678967988338105 80-81 22.511589207431562 27.56640329158209 27.359332106048367 22.562675394937976 82-83 22.561321226863477 27.454639550675353 27.52363891034049 22.46040031212068 84-85 22.57331890543731 27.556594196948364 27.350743920440934 22.51934297717339 86-87 22.397306312165036 27.639426864471094 27.49750229450651 22.465764528857363 88-89 22.510610508053375 27.516634015473716 27.41028686590986 22.56246861056305 90-91 22.52693219494032 27.563857563812483 27.44765451319258 22.46155572805462 92-93 22.648173987610587 27.532013946614757 27.38713623197319 22.43267583380146 94-95 22.354415571594973 27.530062261799422 27.554783634503032 22.560738532102572 96-97 22.426620146256262 27.679835533019066 27.576030336280922 22.317513984443746 98-99 23.52400383617691 29.63902507215624 27.713165116925143 19.12380597474171 100 22.52013521508634 30.543174128274003 21.53698300211542 25.399707654524235 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5855.0 1 6096.5 2 9830.5 3 13489.0 4 17502.0 5 30988.5 6 42200.5 7 48075.0 8 49708.5 9 44412.5 10 35810.0 11 26482.5 12 26116.0 13 37342.5 14 69475.0 15 116420.5 16 154167.0 17 173698.5 18 175360.0 19 162514.0 20 140929.0 21 118224.5 22 104228.0 23 105727.0 24 122537.0 25 153511.0 26 195814.5 27 240781.5 28 287941.5 29 341939.0 30 395883.5 31 447466.5 32 500163.0 33 549614.5 34 599401.5 35 645168.5 36 693283.5 37 744805.5 38 779307.5 39 802229.5 40 824103.5 41 837380.0 42 841421.5 43 857013.5 44 880364.0 45 904862.5 46 920121.0 47 925505.5 48 933189.0 49 932414.0 50 920018.0 51 905425.5 52 883083.0 53 841545.0 54 795759.0 55 747650.5 56 696493.0 57 637200.5 58 571697.5 59 502558.5 60 420385.5 61 340614.5 62 272046.5 63 212377.0 64 161415.0 65 120270.5 66 88919.5 67 67101.5 68 51163.5 69 38311.0 70 28650.0 71 21139.5 72 15100.0 73 10542.5 74 7356.5 75 4957.5 76 3229.5 77 2092.0 78 1446.5 79 1042.5 80 753.5 81 523.5 82 370.5 83 276.5 84 215.0 85 173.5 86 134.0 87 91.0 88 53.5 89 30.0 90 20.0 91 17.5 92 15.5 93 11.0 94 5.5 95 2.5 96 2.0 97 2.0 98 1.0 99 1.0 100 2.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.0352628202310544E-4 3 0.0 4 0.0 5 0.03059632993291195 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 2.1569401284971198E-6 22-23 2.1789553600435723E-4 24-25 8.200354337310914E-5 26-27 1.489659335419792E-4 28-29 1.1666840661031093E-4 30-31 2.163872861563464E-6 32-33 1.301720303654031E-5 34-35 1.52371469278244E-5 36-37 5.81577009027715E-4 38-39 5.0602646720834086E-5 40-41 0.0 42-43 8.936205501271086E-6 44-45 2.9317300648782844E-5 46-47 1.368483969282279E-5 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 9.266264843022336E-5 70-71 7.332669060943254E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 1.10660115809131E-5 90-91 0.0 92-93 0.0 94-95 0.0012508622322766623 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 927.0 20-21 3921.0 22-23 6234.0 24-25 8892.0 26-27 14189.0 28-29 28150.0 30-31 57115.0 32-33 71352.0 34-35 93299.0 36-37 130199.0 38-39 171309.0 40-41 170600.0 42-43 196270.0 44-45 245755.0 46-47 237264.0 48-49 205622.0 50-51 177987.0 52-53 155719.0 54-55 162505.0 56-57 171373.0 58-59 176991.0 60-61 180809.0 62-63 162773.0 64-65 164921.0 66-67 177426.0 68-69 186514.0 70-71 194144.0 72-73 175840.0 74-75 172538.0 76-77 180558.0 78-79 197011.0 80-81 207003.0 82-83 194881.0 84-85 185460.0 86-87 191934.0 88-89 211782.0 90-91 229417.0 92-93 233145.0 94-95 268696.0 96-97 724232.0 98-99 1374238.0 100-101 1.5083524E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.88834631832833 #Duplication Level Percentage of deduplicated Percentage of total 1 85.62780139457372 65.8378004810302 2 9.00243012621547 13.843639305020144 3 2.5861052157682933 5.965240603368831 4 1.1368242377093358 3.4963414276826006 5 0.567167954742284 2.180430306244135 6 0.3133164317557483 1.4454229387235313 7 0.2068061372869082 1.1130687333130087 8 0.13333394257688866 0.8201461082271935 9 0.09692140786980216 0.670691409655797 >10 0.31800707668622863 3.736541768485856 >50 0.008177953686762487 0.4264549225610754 >100 0.0030079439328049556 0.3978490414759285 >500 5.7283225861426655E-5 0.02897310900960363 >1k 4.2893969877202846E-5 0.037399845202104966 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.3135950842960594E-5 0.0 1.7254380337184237E-5 0.0 3 0.0 4.7449545927256654E-5 0.0 2.5881570505776357E-5 0.0 4 0.0 8.195830660162513E-5 0.0 4.3135950842960594E-5 0.0 5 1.2940785252888179E-5 8.195830660162513E-5 0.0 4.7449545927256654E-5 0.0 6 1.2940785252888179E-5 8.627190168592119E-5 0.0 4.7449545927256654E-5 0.0 7 1.2940785252888179E-5 9.058549677021725E-5 0.0 5.1763141011552714E-5 0.0 8 1.7254380337184237E-5 1.0783987710740149E-4 0.0 5.6076736095848774E-5 0.0 9 1.7254380337184237E-5 1.811709935404345E-4 0.0 6.0390331180144834E-5 0.0 10-11 2.5881570505776357E-5 1.811709935404345E-4 0.0 1.1215347219169755E-4 0.0 12-13 3.8822355758664534E-5 1.811709935404345E-4 0.0 1.1862386481814164E-4 0.0 14-15 4.3135950842960594E-5 2.394045271784313E-4 0.0 1.2509425744458572E-4 0.0 16-17 5.6076736095848774E-5 2.4371812226272737E-4 0.0 1.2940785252888178E-4 0.0 18-19 6.470392626444089E-5 2.545021099734675E-4 0.0 1.380350426974739E-4 0.0 20-21 6.901752134873695E-5 2.631293001420596E-4 0.0 1.4666223286606602E-4 0.0 22-23 7.548791397518104E-5 3.041084534428722E-4 0.0 1.5097582795036208E-4 0.0 24-25 8.411510414377316E-5 3.386172141172407E-4 0.0 1.8332779108258253E-4 0.0 26-27 9.489909185451331E-5 3.5802839199657293E-4 0.0 2.394045271784313E-4 0.0 28-29 9.489909185451331E-5 3.5802839199657293E-4 0.0 4.572410789353823E-4 0.0 30-31 9.921268693880937E-5 3.7959636741805323E-4 0.0 0.001235844991650821 0.0 32-33 1.0352628202310543E-4 3.839099625023493E-4 0.0 0.0027434464736122936 0.0 34-35 1.0783987710740149E-4 4.33516305971754E-4 0.0 0.004565940396727379 0.0 36-37 1.1215347219169755E-4 4.8743624452545473E-4 0.0 0.007315857262966116 0.0 38-39 1.1215347219169755E-4 5.025338273204909E-4 0.0 0.012034930285186006 0.0 40-41 1.1215347219169755E-4 5.391993855370075E-4 0.0 0.01754770480291637 0.0 42-43 1.1215347219169755E-4 5.607673609584877E-4 0.0 0.02244794881867669 0.0 44-45 1.1215347219169755E-4 6.276280847650767E-4 0.0 0.02785072666175751 0.0 46-47 1.1215347219169755E-4 6.772344282344814E-4 0.0 0.03383799663876044 0.0 48-49 1.1215347219169755E-4 6.793912257766294E-4 0.0 0.039732524321451 0.0 50-51 1.1215347219169755E-4 7.635063299204025E-4 0.0 0.04601096196664392 0.0 52-53 1.1646706727599361E-4 7.635063299204025E-4 0.0 0.052200970912608766 2.1567975421480296E-6 54-55 1.1646706727599361E-4 7.721335200889946E-4 0.0 0.05761884633848462 4.313595084296059E-6 56-57 1.1646706727599361E-4 7.850743053418828E-4 0.0 0.06312946405867283 4.313595084296059E-6 58-59 1.1646706727599361E-4 7.850743053418828E-4 0.0 0.06900458056348406 4.313595084296059E-6 60-61 1.2509425744458572E-4 7.95858293052623E-4 0.0 0.0746640173140805 4.313595084296059E-6 62-63 1.2509425744458572E-4 8.260534586426954E-4 0.0 0.08012287189325715 4.313595084296059E-6 64-65 1.2509425744458572E-4 8.950709799914324E-4 0.0 0.08516977814188355 4.313595084296059E-6 66-67 1.2509425744458572E-4 9.015413726178764E-4 0.0 0.0901519804642455 4.313595084296059E-6 68-69 1.3372144761317784E-4 9.209525504972086E-4 0.0 0.09526790423422063 4.313595084296059E-6 70-71 1.3372144761317784E-4 9.317365382079488E-4 0.0 0.0998295310358637 4.313595084296059E-6 72-73 1.3372144761317784E-4 9.360501332922449E-4 0.0 0.10344001012141951 4.313595084296059E-6 74-75 1.3372144761317784E-4 9.511477160872811E-4 0.0 0.10609718469334588 4.313595084296059E-6 76-77 1.3372144761317784E-4 0.0010029108570988338 0.0 0.10876082965789868 4.313595084296059E-6 78-79 1.3372144761317784E-4 0.0010266356300624622 0.0 0.110557442010508 4.313595084296059E-6 80-81 1.3372144761317784E-4 0.0010266356300624622 0.0 0.1112756555920433 4.313595084296059E-6 82-83 1.3372144761317784E-4 0.0010352628202310544 0.0 0.11174583745623157 4.313595084296059E-6 84-85 1.3372144761317784E-4 0.0010395764153153504 0.0 0.1119183812596034 4.313595084296059E-6 86-87 1.380350426974739E-4 0.0010525172005682384 0.0 0.11199818276866289 4.313595084296059E-6 88 1.380350426974739E-4 0.0011172211268326794 0.0 0.11200680995883149 4.313595084296059E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 39185 0.0 50.181145 1 GTATCAA 70715 0.0 37.129475 1 TCAACGC 88990 0.0 28.914183 4 ATCAACG 89220 0.0 28.830145 3 CAACGCA 90190 0.0 28.515377 5 TATCAAC 91915 0.0 28.270624 2 AACGCAG 93045 0.0 27.746347 6 ACGCAGA 104885 0.0 24.541494 7 CGCAGAG 106730 0.0 24.125193 8 GTACATG 82870 0.0 21.04393 1 GCAGAGT 122195 0.0 20.99565 9 TACATGG 84170 0.0 20.42695 2 ACATGGG 83710 0.0 20.119102 3 GAGTACT 72845 0.0 19.29309 12-13 AGAGTAC 111810 0.0 19.060839 10-11 CAGAGTA 119500 0.0 18.672523 10-11 CATGGGG 58560 0.0 18.160236 4 AGTACTT 78210 0.0 17.509293 12-13 GTACTTT 81550 0.0 17.208584 14-15 ACTTTTT 91915 0.0 15.462608 16-17 >>END_MODULE