##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140256_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8593894 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.319397818963093 31.0 31.0 34.0 28.0 34.0 2 31.439721504593845 31.0 31.0 34.0 28.0 34.0 3 31.662227856196505 33.0 31.0 34.0 28.0 34.0 4 35.25213564421437 37.0 35.0 37.0 32.0 37.0 5 35.37521652000827 37.0 35.0 37.0 33.0 37.0 6 35.41042651910764 37.0 35.0 37.0 33.0 37.0 7 35.31692303861323 37.0 35.0 37.0 32.0 37.0 8 35.2875737122194 37.0 35.0 37.0 32.0 37.0 9 36.92501583100746 39.0 37.0 39.0 33.0 39.0 10-11 36.946548095659544 39.0 37.0 39.0 33.0 39.0 12-13 36.899480200709945 39.0 37.0 39.0 33.0 39.0 14-15 38.24040813163393 40.0 38.0 41.0 33.0 41.0 16-17 38.2326065459965 40.0 38.0 41.0 33.0 41.0 18-19 38.245251395932975 40.0 38.0 41.0 33.0 41.0 20-21 38.30692701941638 40.0 38.0 41.0 33.0 41.0 22-23 38.274927242803464 40.0 38.0 41.0 33.0 41.0 24-25 38.303648586709905 40.0 38.0 41.0 33.0 41.0 26-27 38.28998914845757 40.0 38.0 41.0 33.0 41.0 28-29 38.22260996473966 40.0 38.0 41.0 33.0 41.0 30-31 38.154047493295245 40.0 38.0 41.0 32.5 41.0 32-33 38.114671691982494 40.0 38.0 41.0 32.0 41.0 34-35 38.04037834806269 40.0 38.0 41.0 32.0 41.0 36-37 37.95745090646721 40.0 38.0 41.0 32.0 41.0 38-39 37.87378393244073 40.0 37.0 41.0 32.0 41.0 40-41 37.83301110658366 40.0 37.0 41.0 32.0 41.0 42-43 37.674686850874394 40.0 37.0 41.0 31.0 41.0 44-45 37.49255439845642 40.0 37.0 41.0 31.0 41.0 46-47 37.34912744879739 40.0 36.0 41.0 31.0 41.0 48-49 37.21523399633992 39.0 36.0 41.0 31.0 41.0 50-51 37.09151374561285 39.0 36.0 40.5 30.0 41.0 52-53 36.951886863289786 39.0 35.5 40.0 30.0 41.0 54-55 36.78190747498248 39.0 35.0 40.0 30.0 41.0 56-57 36.76409113528014 39.0 35.0 40.0 30.0 41.0 58-59 36.8399130003269 39.0 35.0 40.0 30.0 41.0 60-61 37.14197820188366 39.0 35.0 41.0 31.0 41.0 62-63 37.11168623652262 39.0 35.0 41.0 31.0 41.0 64-65 36.9080439227409 39.0 35.0 41.0 31.0 41.0 66-67 36.696006826674704 38.0 35.0 40.0 31.0 41.0 68-69 36.417548354317724 37.5 35.0 40.0 31.0 41.0 70-71 36.16449934795509 37.0 35.0 40.0 30.5 41.0 72-73 35.861535613657594 36.5 34.5 39.0 30.0 41.0 74-75 35.52752377225397 36.0 34.0 39.0 30.0 41.0 76-77 35.20144737882995 36.0 34.0 38.5 30.0 40.0 78-79 34.87057830698425 35.0 34.0 37.0 30.0 39.0 80-81 34.546693110922945 35.0 34.0 37.0 30.0 39.0 82-83 34.27224479940477 35.0 34.0 36.5 29.0 39.0 84-85 34.02424274124859 35.0 34.0 36.0 29.0 37.0 86-87 33.83228057157798 35.0 33.5 36.0 29.0 37.0 88-89 33.70788653138993 35.0 33.0 35.0 29.0 37.0 90-91 33.58396573155492 35.0 33.0 35.0 29.0 36.0 92-93 33.506880149047916 35.0 33.0 35.0 29.0 36.0 94-95 33.47391031416231 35.0 33.0 35.0 29.0 36.0 96-97 33.472537610691276 35.0 33.0 35.0 29.5 36.0 98-99 33.51086315167294 35.0 33.0 35.0 30.0 35.0 100 32.774444981831024 34.0 32.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 3.0 16 55.0 17 286.0 18 1299.0 19 4644.0 20 11566.0 21 23216.0 22 37150.0 23 51110.0 24 66476.0 25 82084.0 26 93201.0 27 99025.0 28 112836.0 29 134935.0 30 158799.0 31 189129.0 32 235633.0 33 302758.0 34 408656.0 35 573729.0 36 898555.0 37 1609815.0 38 2268199.0 39 1181962.0 40 48772.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.466650624268816 20.34517763425986 14.188120076882493 24.000051664588835 2 13.965876722537962 20.957508363936316 42.15550753627088 22.92110737725484 3 17.92874243621631 26.26718327546896 30.225094943743724 25.578979344571014 4 12.322071180838435 18.0966341565606 39.65818998626661 29.92310467633435 5 13.313296736636099 38.10938813396063 35.7111294698452 12.866185659558083 6 29.579746771803677 38.13464740634053 19.38722807808094 12.89837774377485 7 26.34779578769883 32.75164712492732 23.50187627697861 17.39868081039524 8 23.838450201041827 37.28338577852189 21.6418032021936 17.236360818242687 9 24.96454455284712 17.914321394144952 21.713465064224742 35.407668988783186 10-11 23.62398443824443 27.31296040709858 29.353549946944856 19.70950520771213 12-13 24.289313374472655 24.80556122673695 29.24048455116855 21.66464084762185 14-15 21.66737560168569 26.356912389885984 26.514739884847078 25.46097212358125 16-17 21.690681011487683 29.389494693098495 27.194414987031724 21.725409308382098 18-19 21.759659925969526 29.013554799114043 28.198336411778897 21.028448863137527 20-21 22.581192923254928 28.144188698299484 27.962169481848314 21.312448896597274 22-23 22.283695447076298 28.03832098344266 27.76683835167248 21.911145217808567 24-25 22.048258436183474 28.170834136462876 27.82374224666612 21.95716518068753 26-27 22.061167511223914 28.2832083981558 27.71612838312892 21.939495707491368 28-29 21.991334093660488 28.33044534068019 27.76449500488202 21.913725560777312 30-31 22.24581761762335 28.12963542831057 27.7237446735473 21.90080228051877 32-33 22.021130193793983 28.24370726435792 27.73063896877932 22.00452357306878 34-35 22.15514176674585 28.229569602610493 27.75457507645728 21.860713554186376 36-37 22.1382628324411 28.116289171454607 27.78095781894518 21.964490177159117 38-39 22.00783001583694 28.184397627411222 27.8506450290841 21.95712732766774 40-41 22.194164524698063 28.026520976952778 27.8573741675599 21.921940330789262 42-43 22.02628072079155 28.09308590264018 27.79551333835365 22.08512003821462 44-45 22.07234494382498 28.09403174760491 27.819347945506813 22.014275363063298 46-47 22.037384141916448 28.01471336212456 27.78827204449028 22.159630451468708 48-49 21.97147564273507 27.997248106679134 27.916984551487168 22.11429169909863 50-51 21.792156559267838 28.000583139881975 28.020585478105442 22.186674822744745 52-53 21.96053675526985 27.856232566774786 27.967763209661427 22.215467468293934 54-55 21.968995072980338 27.674203570333695 28.080176131595074 22.276625225090896 56-57 21.81758083633999 27.565152888856492 28.197213819783112 22.420052455020404 58-59 21.73168599489134 27.523124951105117 28.330210269725903 22.414978784277643 60-61 21.62539040246698 27.382339057898896 28.664119931936412 22.328150607697715 62-63 21.488876495282227 27.598563243232782 28.680880892065037 22.23167936941995 64-65 21.37521867800265 27.87178219919657 28.374186704843396 22.378812417957377 66-67 21.22573592709517 28.061263085171966 28.126090603162908 22.586910384569958 68-69 21.340253779662955 28.24190613414288 28.14444970958268 22.273390376611484 70-71 21.351887819349884 28.271934006619816 27.807433934383276 22.56874423964703 72-73 21.692650316557852 28.124282885412487 27.444242773861 22.738824024168657 74-75 21.89773225988178 27.975784833652 27.454650362365385 22.67183254410083 76-77 22.12305138835673 27.55375640760212 27.575577351666762 22.747614852374387 78-79 22.371497607651943 27.362986301049148 27.403599142190753 22.861916949108156 80-81 22.74572318966391 27.3837449714788 27.123877568345446 22.746654270511847 82-83 22.45470884111517 27.65132807286429 27.02483195005542 22.86913113596512 84-85 22.807058240774474 27.65714589270764 27.009858757533323 22.525937108984564 86-87 22.719724473386453 27.889742540705377 27.006066794605683 22.384466191302494 88-89 22.572393981150768 28.141494352714286 26.938046268542443 22.3480653975925 90-91 22.779229259542365 28.213842024578963 27.263198731194105 21.743729984684563 92-93 22.887921000057553 28.01254290539974 27.518863451946874 21.58067264259583 94-95 22.57526059215849 28.041206692333247 27.93118452346315 21.45234819204511 96-97 22.837537714708684 27.760798084170368 28.161903025486488 21.23976117563446 98-99 23.56083512176876 29.83740648545617 28.623288080107436 17.978470312667632 100 22.76592304549729 31.059083156586436 22.395772814896144 23.77922098302013 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3000.0 1 2209.0 2 1541.0 3 1618.0 4 1539.5 5 1597.0 6 1860.5 7 2255.5 8 2601.5 9 2956.5 10 3368.0 11 3604.5 12 3831.5 13 4286.0 14 4964.5 15 5872.5 16 7032.0 17 8394.5 18 10098.5 19 12484.5 20 15679.5 21 19840.5 22 25559.0 23 33327.5 24 43032.5 25 55551.0 26 71398.0 27 89494.0 28 108794.5 29 129209.5 30 149928.5 31 170214.5 32 190927.0 33 210194.5 34 228788.0 35 247093.0 36 266852.5 37 286563.0 38 302187.0 39 315418.0 40 328865.5 41 340405.5 42 347964.0 43 355396.0 44 361176.0 45 366839.5 46 369245.0 47 367984.0 48 365378.0 49 359214.0 50 352841.0 51 341354.5 52 323693.0 53 303084.5 54 281248.5 55 258590.5 56 233827.5 57 207941.0 58 182698.0 59 158415.0 60 132401.0 61 107473.5 62 85951.5 63 67229.0 64 51727.0 65 39870.0 66 31028.0 67 24220.5 68 18977.5 69 14890.5 70 11669.5 71 9080.5 72 6986.0 73 5278.0 74 3974.0 75 2972.5 76 2236.5 77 1719.0 78 1367.0 79 1051.0 80 782.5 81 584.0 82 448.0 83 320.5 84 226.0 85 176.0 86 146.5 87 121.0 88 82.5 89 48.5 90 33.5 91 27.5 92 20.0 93 8.0 94 2.5 95 3.0 96 2.5 97 3.5 98 7.5 99 9.0 100 17.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.01221797708931481 3 0.022853435241346937 4 0.019711669704094558 5 0.01106599639232227 6 0.013614317328093645 7 0.015662283011635938 8 0.0018617869850384473 9 1.1636168656490296E-4 10-11 5.818084328245148E-5 12-13 0.002914860248450819 14-15 2.0363295148858018E-4 16-17 4.3635632461838604E-4 18-19 5.818084328245147E-6 20-21 1.1642510204369131E-4 22-23 1.1651113692091707E-5 24-25 2.3321360535523737E-5 26-27 0.0025503272355806715 28-29 0.0035878269356165626 30-31 0.002651777375737888 32-33 0.003966653820028456 34-35 0.005967902571812878 36-37 0.0011817913605260768 38-39 0.0013960123471648653 40-41 6.034519482864384E-4 42-43 6.0070732085616174E-5 44-45 8.460541605196803E-5 46-47 0.004124798642296367 48-49 7.660431810574313E-4 50-51 2.6472707500469123E-4 52-53 0.004341712137815207 54-55 2.1035765193591835E-4 56-57 1.5495007539560767E-4 58-59 5.401691176374717E-4 60-61 6.219938647769167E-5 62-63 0.0 64-65 6.296742292220727E-6 66-67 0.0017163296176704141 68-69 0.0 70-71 3.4382786809206026E-4 72-73 0.0015599712939063917 74-75 1.5229308021958544E-4 76-77 2.007446153100825E-5 78-79 0.0 80-81 0.003217602338580764 82-83 1.1775708223995307E-4 84-85 3.6442663426072906E-4 86-87 0.013538725755556993 88-89 6.535751963760045E-4 90-91 8.154961748132551E-4 92-93 7.388082918818784E-5 94-95 1.8771234959547988E-4 96-97 5.3760183042671224E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3206.0 20-21 6108.0 22-23 6845.0 24-25 7813.0 26-27 10223.0 28-29 13334.0 30-31 20097.0 32-33 23598.0 34-35 31118.0 36-37 42671.0 38-39 48178.0 40-41 46293.0 42-43 47344.0 44-45 53609.0 46-47 59656.0 48-49 37373.0 50-51 36912.0 52-53 14415.0 54-55 14472.0 56-57 14058.0 58-59 14169.0 60-61 15118.0 62-63 68683.0 64-65 73543.0 66-67 78265.0 68-69 79336.0 70-71 79697.0 72-73 77314.0 74-75 78153.0 76-77 81652.0 78-79 85711.0 80-81 85771.0 82-83 83645.0 84-85 83843.0 86-87 87127.0 88-89 93106.0 90-91 98598.0 92-93 104444.0 94-95 127632.0 96-97 308420.0 98-99 580863.0 100-101 5671481.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.51862068985105 #Duplication Level Percentage of deduplicated Percentage of total 1 89.72530756735526 76.73184544132877 2 7.226184316596732 12.35946631211973 3 1.751634904289991 4.493922029012379 4 0.6221428575227927 2.1281919618956704 5 0.2865940084673326 1.2254562151050885 6 0.1324192382301219 0.679458636374449 7 0.08123951213977648 0.4863243716597066 8 0.05239238878582375 0.3584419858888054 9 0.02799411990565181 0.21546166695818816 >10 0.09243558976259142 1.181491661252751 >50 0.0012308810451514979 0.0665169972101703 >100 4.039383604932779E-4 0.058533512673880614 >500 2.067753825826779E-5 0.014889208520335142 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3272337312980587E-5 0.0 0.0 0.0 3 0.0 2.3272337312980587E-5 0.0 1.1636168656490293E-5 0.0 4 0.0 6.981701193894176E-5 0.0 3.490850596947088E-5 0.0 5 0.0 6.981701193894176E-5 0.0 5.818084328245147E-5 0.0 6 0.0 6.981701193894176E-5 0.0 5.818084328245147E-5 0.0 7 0.0 8.145318059543206E-5 0.0 6.981701193894176E-5 0.0 8 0.0 1.2799785522139324E-4 0.0 6.981701193894176E-5 0.0 9 0.0 2.559957104427865E-4 0.0 6.981701193894176E-5 0.0 10-11 0.0 2.559957104427865E-4 0.0 1.0472551790841265E-4 0.0 12-13 0.0 2.618137947710316E-4 0.0 1.1636168656490294E-4 0.0 14-15 0.0 3.1417655372523797E-4 0.0 1.3381593954963839E-4 0.0 16-17 0.0 3.2581272238172825E-4 0.0 1.8036061417559955E-4 0.0 18-19 0.0 3.4326697536646365E-4 0.0 2.094510358168253E-4 0.0 20-21 0.0 3.607212283511991E-4 0.0 2.3854145745805103E-4 0.0 22-23 0.0 4.479924932748763E-4 0.0 3.025403850687476E-4 0.0 24-25 0.0 5.11991420885573E-4 0.0 4.596286619313666E-4 0.0 26-27 0.0 5.236275895420632E-4 0.0 9.250754081909784E-4 0.0 28-29 0.0 5.236275895420632E-4 0.0 0.003758482476046365 0.0 30-31 0.0 5.468999268550438E-4 0.0 0.012683423835574421 0.0 32-33 0.0 5.585360955115341E-4 0.0 0.040121509527578536 0.0 34-35 0.0 6.516254447634565E-4 0.0 0.07735724922834747 0.0 36-37 0.0 7.330786253588886E-4 0.0 0.130674174012386 0.0 38-39 0.0 7.621690470001143E-4 0.0 0.19501055051412083 0.0 40-41 0.0 8.261679746108108E-4 0.0 0.25519863288981687 0.0 42-43 0.0 8.436222275955463E-4 0.0 0.35941797746167226 0.0 44-45 0.0 9.134392395344881E-4 0.0 0.4623224349753441 0.0 46-47 0.0 9.774381671451848E-4 0.0 0.5831116837140417 5.818084328245147E-6 48-49 0.0 9.774381671451848E-4 0.0 0.6660484758131762 1.1636168656490293E-5 50-51 0.0 0.0010937998537100875 0.0 1.006639132388647 1.1636168656490293E-5 52-53 0.0 0.0010937998537100875 0.0 1.4601820781126693 1.745425298473544E-5 54-55 0.0 0.0011054360223665778 0.0 2.0557619165421404 2.3272337312980587E-5 56-57 0.0 0.0011287083596795585 0.0 2.7065728294996427 2.3272337312980587E-5 58-59 0.0 0.001146162612664294 0.0 3.3788350193753844 2.3272337312980587E-5 60-61 0.0 0.0011927072872902553 0.0 4.047978716051187 2.3272337312980587E-5 62-63 0.0 0.0012334338775879712 0.0 4.534620743518596 2.3272337312980587E-5 64-65 0.0 0.0013497955641528741 0.0 4.542591519048292 2.3272337312980587E-5 66-67 0.0 0.0013614317328093644 0.0 4.545774011175842 2.3272337312980587E-5 68-69 0.0 0.0013788859857940998 0.0 4.548613236328025 2.3272337312980587E-5 70-71 0.0 0.001384704070122345 0.0 4.550992832818277 2.3272337312980587E-5 72-73 0.0 0.001384704070122345 0.0 4.553343338886888 2.3272337312980587E-5 74-75 0.0 0.0014021583231070803 0.0 4.555391304570431 2.3272337312980587E-5 76-77 0.0 0.001466157250717777 0.0 4.557206546880844 2.3272337312980587E-5 78-79 0.0 0.001501065756687248 0.0 4.558567978613652 2.3272337312980587E-5 80-81 0.0 0.001506883841015493 0.0 4.55930687532334 2.9090421641225733E-5 82-83 0.0 0.0015127019253437382 0.0 4.559749049732286 4.6544674625961174E-5 84-85 0.0 0.0015243380940002285 0.0 4.559847957165867 4.6544674625961174E-5 86-87 0.0 0.0015534285156414544 0.0 4.559900319924822 4.6544674625961174E-5 88 0.0 0.0016406997805651314 0.0 4.559911956093478 4.6544674625961174E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5925 0.0 33.6551 1 GTATCAA 9930 0.0 30.797009 1 TCAACGC 9910 0.0 29.068071 4 CAACGCA 10230 0.0 28.198294 5 ATCAACG 10205 0.0 28.05907 3 AACGCAG 10830 0.0 26.513485 6 TATCAAC 11740 0.0 25.054121 2 ACGCAGA 12990 0.0 22.10439 7 CGCAGAG 13695 0.0 20.933083 8 TGTAGAT 11865 0.0 20.692715 94 GTACATG 23555 0.0 20.640566 1 TACATGG 23695 0.0 19.715393 2 GGTGTAG 12960 0.0 19.602867 94 GTGTAGA 12170 0.0 19.311058 94 ACATGGG 23640 0.0 18.827652 3 AGGTGTA 15985 0.0 16.83778 94 CATGGGG 16970 0.0 15.853463 4 GCAGAGT 18150 0.0 15.58046 9 AGAGTAC 15135 0.0 15.341613 10-11 TTAGGTG 20040 0.0 15.330691 94 >>END_MODULE