##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140253_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6832045 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.17442830075036 31.0 31.0 34.0 28.0 34.0 2 31.280746394381186 31.0 31.0 34.0 28.0 34.0 3 31.516539337782465 31.0 31.0 34.0 28.0 34.0 4 35.09418746510013 37.0 35.0 37.0 32.0 37.0 5 35.227864277826036 37.0 35.0 37.0 32.0 37.0 6 35.261367277293985 37.0 35.0 37.0 32.0 37.0 7 35.15296796200845 37.0 35.0 37.0 32.0 37.0 8 35.12182530999137 37.0 35.0 37.0 32.0 37.0 9 36.73226962058944 39.0 37.0 39.0 32.0 39.0 10-11 36.75238109526504 39.0 37.0 39.0 32.0 39.0 12-13 36.69637707304328 39.0 37.0 39.0 32.0 39.0 14-15 38.01749498137088 40.0 38.0 41.0 32.0 41.0 16-17 38.01179624841464 40.0 38.0 41.0 32.0 41.0 18-19 38.028374813105 40.0 38.0 41.0 32.0 41.0 20-21 38.093185522321434 40.0 38.0 41.0 32.0 41.0 22-23 38.06950482716794 40.0 38.0 41.0 32.0 41.0 24-25 38.099462335119185 40.0 38.0 41.0 32.0 41.0 26-27 38.084266080654615 40.0 38.0 41.0 32.0 41.0 28-29 38.018506754333366 40.0 38.0 41.0 32.0 41.0 30-31 37.94846216874524 40.0 38.0 41.0 32.0 41.0 32-33 37.90686677764966 40.0 37.0 41.0 32.0 41.0 34-35 37.825339637211314 40.0 37.0 41.0 31.5 41.0 36-37 37.73910710694473 40.0 37.0 41.0 31.0 41.0 38-39 37.64917772902056 40.0 37.0 41.0 31.0 41.0 40-41 37.60231106159978 40.0 37.0 41.0 31.0 41.0 42-43 37.43548680460594 40.0 36.5 41.0 31.0 41.0 44-45 37.24009748234252 39.5 36.0 41.0 30.0 41.0 46-47 37.08588541128232 39.0 36.0 41.0 30.0 41.0 48-49 36.936797194034035 39.0 35.0 40.0 30.0 41.0 50-51 36.79703374556364 39.0 35.0 40.0 30.0 41.0 52-53 36.6358236201317 39.0 35.0 40.0 30.0 41.0 54-55 36.44988336141881 38.0 35.0 40.0 29.5 41.0 56-57 36.41643021256054 38.0 34.5 40.0 29.5 41.0 58-59 36.47353137736833 38.0 35.0 40.0 30.0 41.0 60-61 36.7717982367795 39.0 35.0 40.0 30.5 41.0 62-63 36.72164354225942 38.5 35.0 40.0 31.0 41.0 64-65 36.485704580582 38.0 35.0 40.0 30.0 41.0 66-67 36.245077678109865 37.0 35.0 40.0 30.0 41.0 68-69 35.93934569028335 37.0 34.0 40.0 30.0 41.0 70-71 35.67267161602308 36.0 34.0 39.0 30.0 41.0 72-73 35.35462153904825 36.0 34.0 39.0 30.0 41.0 74-75 35.0339133612313 35.5 34.0 38.5 29.0 40.0 76-77 34.72269366249482 35.0 34.0 37.0 29.0 39.5 78-79 34.41412791944781 35.0 34.0 37.0 29.0 39.0 80-81 34.11801356795398 35.0 33.0 36.5 29.0 39.0 82-83 33.877804070118096 35.0 33.0 36.0 29.0 37.5 84-85 33.6637331188871 35.0 33.0 36.0 29.0 37.0 86-87 33.48964573313326 35.0 33.0 35.0 29.0 37.0 88-89 33.35372923165889 35.0 33.0 35.0 29.0 36.0 90-91 33.229639283722605 35.0 33.0 35.0 29.0 36.0 92-93 33.158276843868414 35.0 33.0 35.0 29.0 36.0 94-95 33.153430900973305 35.0 33.0 35.0 29.0 36.0 96-97 33.194368164759965 35.0 33.0 35.0 29.0 35.0 98-99 33.31697396176244 35.0 33.0 35.0 29.0 35.0 100 32.58313162331875 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 52.0 17 314.0 18 1231.0 19 4187.0 20 10602.0 21 21215.0 22 34305.0 23 47961.0 24 63256.0 25 77863.0 26 86792.0 27 90166.0 28 101819.0 29 119756.0 30 140715.0 31 165968.0 32 206422.0 33 265493.0 34 359868.0 35 511305.0 36 816430.0 37 1383950.0 38 1619153.0 39 674436.0 40 28785.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.07375683269065 19.59886095598024 14.154971168954535 24.172411042374577 2 14.545431922016745 20.419749941811187 41.39287183383325 23.641946302338823 3 18.418667815241474 25.341227149895744 29.540367065691004 26.699737969171778 4 12.748246280395744 17.47130300301562 38.0366070164595 31.743843700129137 5 14.005223607708874 37.53123493147857 34.765609560941165 13.697931899871385 6 31.063097098967468 36.71343084931185 18.66166390041858 13.561808151302108 7 27.70851101392782 32.13205880535986 22.195442651950394 17.963987528761933 8 24.973115230165394 36.423970661313376 20.613749984448038 17.989164124073195 9 25.562369045240548 17.61795716795947 20.82890383319172 35.99076995360826 10-11 24.536794884283157 26.794472254165242 28.157395367872002 20.511337493679598 12-13 25.140752628426526 24.284131780526604 28.12762557224667 22.447490018800195 14-15 22.466751663322494 25.655450899062483 25.61227927234256 26.26551816527246 16-17 22.47981801579518 28.764224468555906 26.163376388672077 22.59258112697684 18-19 22.605936085891717 28.292806662252172 27.270689415934672 21.830567835921432 20-21 23.62458354806031 27.33343258925325 26.988253406075767 22.053730456610676 22-23 23.328209650262817 27.209601151692535 26.78484855814867 22.677340639895974 24-25 22.97313568103705 27.35606021196234 26.94127918319592 22.729524923804686 26-27 22.924095266589973 27.448296724159597 26.86142554632049 22.766182462929937 28-29 22.88302949465342 27.46296020182469 26.888217078201183 22.76579322532071 30-31 23.183500360797 27.239691132718413 26.81790304561292 22.758905460871667 32-33 22.910527975240324 27.330614544670784 26.83878873043431 22.92006874965458 34-35 23.04923502326223 27.309120269728616 26.903238082903048 22.73840662410611 36-37 23.08097171749372 27.086331830455467 26.924509273540558 22.908187178510246 38-39 22.81502027709644 27.20706854036456 27.125320243311794 22.85259093922721 40-41 22.985063164765965 27.00460806174166 27.153058135516485 22.857270637975894 42-43 22.71559953471554 27.019779063705627 27.178388597234765 23.086232804344068 44-45 22.657144274639876 27.005655813108316 27.23214685986411 23.1050530523877 46-47 22.61741344437977 26.914777628848675 27.2875587727969 23.180250153974658 48-49 22.493626989378303 26.947408003902623 27.388276211385953 23.17068879533312 50-51 22.254226725858082 26.9919082059412 27.505709424518127 23.24815564368259 52-53 22.423791995202485 26.922064498242364 27.44234770829786 23.211795798257285 54-55 22.409772265705914 26.756062034360333 27.536443465600108 23.297722234333644 56-57 22.34754148655631 26.92984998071536 27.421772784371267 23.300835748357063 58-59 22.27218049124458 26.90661793550194 27.477565010085968 23.34363656316751 60-61 22.278175030566942 26.73287296171958 27.494963981465965 23.493988026247514 62-63 22.27217838024534 26.763019057826504 27.463978213016144 23.500824348912015 64-65 22.401843257095177 26.780919815573146 27.361454768701314 23.45578215863036 66-67 22.310260660808154 26.9510899405785 27.041031369625017 23.697618028988327 68-69 22.28855287165765 27.053461381005008 26.95881210948588 23.699173637851466 70-71 22.37455134746949 26.961248548120555 26.854410090470495 23.809790013939462 72-73 22.50274990262836 27.01212028046219 26.455696101709357 24.029433715200092 74-75 22.489438951357094 26.95161427510493 26.407944679956998 24.151002093580985 76-77 22.791506268328284 26.750521526800725 26.411417243081036 24.046554961789955 78-79 22.79810940133842 26.562733358834194 26.597312661277456 24.04184457854993 80-81 23.011360057623275 26.467847235251575 26.51769363742169 24.003099069703456 82-83 22.99809651994392 26.51878622089823 26.544257285489792 23.938859973668063 84-85 23.058158019745246 26.388705402101543 26.631759549654983 23.92137702849823 86-87 22.726520630381515 26.666927066704922 26.796025170302496 23.810527132611067 88-89 22.853390004173608 26.776768784756698 26.595650202543347 23.77419100852634 90-91 22.83422633468494 26.96487645903018 26.782802548171585 23.418094658113297 92-93 22.62064825798394 26.961634713306587 27.03770236303517 23.3800146656743 94-95 22.389534092614753 27.044586624620486 27.297162958401312 23.26871632436345 96-97 22.444020747286526 27.007482470463934 27.539832869080783 23.008663913168764 98-99 23.85088139579873 29.06753506395247 27.532352223921986 19.54923131632681 100 23.153655545944847 30.2287672917731 21.161636167549016 25.45594099473304 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3610.0 1 2600.5 2 1669.0 3 1684.5 4 1590.5 5 1591.0 6 1815.5 7 2145.0 8 2385.0 9 2711.5 10 3034.5 11 3218.0 12 3410.0 13 3722.5 14 4252.5 15 4853.0 16 5547.0 17 6512.5 18 7680.0 19 9060.5 20 10838.0 21 13180.5 22 16346.0 23 20570.0 24 26152.0 25 33606.0 26 42762.0 27 52888.0 28 63938.0 29 76619.0 30 88614.5 31 100274.5 32 114021.0 33 127452.0 34 140670.0 35 153447.0 36 167668.5 37 182710.0 38 194049.0 39 203944.5 40 215955.5 41 228158.0 42 238092.5 43 246779.5 44 255749.5 45 266749.0 46 276459.5 47 285032.5 48 291145.0 49 293762.0 50 294691.0 51 292522.5 52 283966.0 53 269844.5 54 255982.0 55 241210.5 56 224421.5 57 204567.5 58 183513.0 59 161871.5 60 136446.5 61 113841.0 62 93788.5 63 75349.0 64 60727.0 65 47884.5 66 38095.5 67 29238.5 68 21548.5 69 16936.5 70 13181.5 71 9547.0 72 7172.0 73 5442.5 74 4095.0 75 3084.0 76 2328.0 77 1766.0 78 1397.5 79 1148.5 80 917.5 81 719.5 82 565.0 83 380.5 84 241.0 85 171.5 86 127.5 87 92.0 88 54.5 89 35.0 90 27.5 91 26.5 92 22.5 93 12.0 94 6.5 95 5.5 96 6.5 97 7.0 98 5.5 99 5.5 100 19.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012221816454663281 3 0.022701841103212876 4 0.018705965783305 5 0.010992316356230089 6 0.013041483186952075 7 0.014153888037915442 8 0.0016100596527101327 9 1.4636905933728482E-4 10-11 2.1955358900592723E-5 12-13 0.0029420180926794247 14-15 1.6832441823787754E-4 16-17 3.439672894426193E-4 18-19 1.4636905933728483E-5 20-21 2.9293425727727423E-5 22-23 1.4660035248588752E-5 24-25 5.8697816815413054E-5 26-27 0.0023138755255435696 28-29 0.0036703947285187753 30-31 0.0025341709750642733 32-33 0.0039474963797400025 34-35 0.005551519020531676 36-37 9.999005284140993E-4 38-39 0.0012322965933012208 40-41 5.729906353238309E-4 42-43 3.7284784765377286E-5 44-45 8.966087566995353E-5 46-47 0.004050421382331703 48-49 6.30225762623816E-4 50-51 2.9320459997419796E-4 52-53 0.004045479018993185 54-55 2.038136554394279E-4 56-57 1.6640962682716825E-4 58-59 5.002033402366447E-4 60-61 2.2781395800933126E-5 62-63 0.0 64-65 1.5325225420656364E-5 66-67 0.001384052009427018 68-69 0.0 70-71 2.917351587228497E-4 72-73 0.0013301307183972292 74-75 8.046966603398733E-5 76-77 8.135508280116939E-6 78-79 1.646633178538837E-5 80-81 0.002486001434372774 82-83 1.014782420078485E-4 84-85 2.914823790757488E-4 86-87 0.011812298916921787 88-89 7.069371655690142E-4 90-91 6.473697143723899E-4 92-93 1.8322928047877077E-5 94-95 8.4167101997622E-5 96-97 6.72365314901815E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3121.0 20-21 5963.0 22-23 6575.0 24-25 7467.0 26-27 8942.0 28-29 10023.0 30-31 10739.0 32-33 11934.0 34-35 13298.0 36-37 14766.0 38-39 15896.0 40-41 15105.0 42-43 12895.0 44-45 13590.0 46-47 14071.0 48-49 13549.0 50-51 13746.0 52-53 13252.0 54-55 13725.0 56-57 12770.0 58-59 12869.0 60-61 14052.0 62-63 34520.0 64-65 57337.0 66-67 61505.0 68-69 62711.0 70-71 64283.0 72-73 63575.0 74-75 66379.0 76-77 70944.0 78-79 78624.0 80-81 81278.0 82-83 79893.0 84-85 82602.0 86-87 88582.0 88-89 95207.0 90-91 102191.0 92-93 108142.0 94-95 125177.0 96-97 270476.0 98-99 484130.0 100-101 4496141.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.52053428049268 #Duplication Level Percentage of deduplicated Percentage of total 1 89.34165281407701 75.51204229348072 2 7.489906286180596 12.661017620376095 3 1.7528417834367747 4.444533721357436 4 0.6607380099491337 2.233837184813211 5 0.28420737623691755 1.2010679643000637 6 0.148665735092002 0.7539184415506921 7 0.08884759831181768 0.5256612535197401 8 0.056852186536146584 0.38441417448394744 9 0.04096594608563378 0.31162172854172626 >10 0.13252707196200217 1.7388648403991434 >50 0.002149883214798109 0.12396789652616501 >100 5.886720074655082E-4 0.08023525574826766 >500 5.6636909694976565E-5 0.028817624902789336 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.8547623734913925E-5 0.0 0.0 0.0 3 0.0 5.8547623734913925E-5 0.0 0.0 0.0 4 0.0 1.1709524746982785E-4 0.0 1.4636905933728481E-5 0.0 5 0.0 1.1709524746982785E-4 0.0 1.4636905933728481E-5 0.0 6 0.0 1.1709524746982785E-4 0.0 5.8547623734913925E-5 0.0 7 0.0 1.1709524746982785E-4 0.0 7.318452966864241E-5 0.0 8 0.0 1.1709524746982785E-4 0.0 7.318452966864241E-5 0.0 9 0.0 3.366488364757551E-4 0.0 8.782143560237089E-5 0.0 10-11 0.0 3.366488364757551E-4 0.0 1.244137004366921E-4 0.0 12-13 0.0 3.5128574240948356E-4 0.0 1.610059652710133E-4 0.0 14-15 0.0 4.3910717801185444E-4 0.0 1.6832441823787754E-4 7.318452966864241E-6 16-17 0.0 4.3910717801185444E-4 0.0 1.975982301053345E-4 2.9273811867456962E-5 18-19 0.0 4.537440839455829E-4 0.0 2.1955358900592722E-4 2.9273811867456962E-5 20-21 0.0 4.683809898793114E-4 0.0 3.000565716414339E-4 2.9273811867456962E-5 22-23 0.0 5.049732547136326E-4 0.0 7.245268437195598E-4 3.6592264834321205E-5 24-25 0.0 5.78157784382275E-4 0.0 0.0014490536874391196 4.3910717801185445E-5 26-27 0.0 6.001131432828678E-4 0.0 0.0037909586368356767 4.3910717801185445E-5 28-29 0.0 6.001131432828678E-4 0.0 0.01853032291210026 4.3910717801185445E-5 30-31 0.0 6.659792199846459E-4 0.0 0.06422674323720057 4.3910717801185445E-5 32-33 0.0 6.732976729515102E-4 0.0 0.16433586137093653 4.3910717801185445E-5 34-35 0.0 7.757560144876095E-4 0.0 0.30495261667626605 5.8547623734913925E-5 36-37 0.0 8.782143560237089E-4 0.0 0.527536045210475 5.8547623734913925E-5 38-39 0.0 8.782143560237089E-4 0.0 0.8362723020706099 5.8547623734913925E-5 40-41 0.0 9.513988856923513E-4 0.0 1.1533296399540696 5.8547623734913925E-5 42-43 0.0 9.806726975598082E-4 0.0 1.5126071330033688 5.8547623734913925E-5 44-45 0.0 0.0010831310390959077 0.0 1.9460791022307378 5.8547623734913925E-5 46-47 0.0 0.001185589380632007 0.0 2.4436460825419033 5.8547623734913925E-5 48-49 0.0 0.001185589380632007 0.0 2.952798173899616 5.8547623734913925E-5 50-51 0.0 0.0012660923632675136 0.0 3.4620819974107313 5.8547623734913925E-5 52-53 0.0 0.0012734108162343778 0.0 3.955448185718917 9.513988856923513E-5 54-55 0.0 0.0012734108162343778 0.0 4.464775919947834 1.3905060637042058E-4 56-57 0.0 0.0012880477221681064 0.0 5.026650146478836 1.4636905933728482E-4 58-59 7.318452966864241E-6 0.0012880477221681064 0.0 5.621911155444673 1.4636905933728482E-4 60-61 1.4636905933728481E-5 0.0013100030810686992 0.0 6.2205093789634 1.610059652710133E-4 62-63 1.4636905933728481E-5 0.0013173215340355634 0.0 6.781842039974854 1.610059652710133E-4 64-65 1.4636905933728481E-5 0.001551512028975219 0.0 6.927874450475663 1.610059652710133E-4 66-67 1.4636905933728481E-5 0.0015588304819420832 0.0 6.931153117404818 1.610059652710133E-4 68-69 1.4636905933728481E-5 0.001610059652710133 0.0 6.9341463646682655 1.610059652710133E-4 70-71 1.4636905933728481E-5 0.0016393334645775897 0.0 6.936510224976563 1.7564287120474178E-4 72-73 1.4636905933728481E-5 0.0016539703705113183 0.0 6.938383748936079 2.0491668307219874E-4 74-75 1.4636905933728481E-5 0.001675925729411911 0.0 6.939971853229889 2.0491668307219874E-4 76-77 1.4636905933728481E-5 0.0017125179942462322 0.0 6.941559957523699 2.0491668307219874E-4 78-79 1.4636905933728481E-5 0.0017417918061136892 0.0 6.942774820716199 2.0491668307219874E-4 80-81 1.4636905933728481E-5 0.0017417918061136892 0.0 6.943389570765415 2.0491668307219874E-4 82-83 1.4636905933728481E-5 0.0017417918061136892 0.0 6.943792085678592 2.341904949396557E-4 84-85 1.4636905933728481E-5 0.0017564287120474178 0.0 6.943967728549797 2.341904949396557E-4 86-87 1.4636905933728481E-5 0.0017710656179811461 0.0 6.944033594626498 2.341904949396557E-4 88 1.4636905933728481E-5 0.0019027977713847025 0.0 6.944040913079466 2.341904949396557E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5610 0.0 44.41681 1 GTATCAA 9510 0.0 34.56593 1 TCAACGC 10825 0.0 29.02445 4 ATCAACG 11035 0.0 28.51443 3 CAACGCA 11370 0.0 27.669432 5 AACGCAG 11720 0.0 26.877468 6 TATCAAC 12145 0.0 26.306753 2 ACGCAGA 14155 0.0 22.253408 7 GTACATG 24520 0.0 21.63286 1 TACATGG 23965 0.0 21.345478 2 CGCAGAG 15280 0.0 20.527382 8 ACATGGG 24410 0.0 20.523954 3 CATGGGG 18725 0.0 18.773878 4 GCAGAGT 18305 0.0 16.894884 9 GTGGTAT 3885 0.0 16.515396 1 TGGTATC 3645 0.0 16.15614 2 GTATAGG 1935 0.0 16.12518 1 AGAGTAC 15460 0.0 15.969053 10-11 CAGAGTA 17410 0.0 15.921459 10-11 GTATAAG 2730 0.0 14.648931 1 >>END_MODULE