##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140252_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8969947 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.624772253392354 31.0 31.0 34.0 30.0 34.0 2 31.7259554599375 33.0 31.0 34.0 30.0 34.0 3 31.76459247752523 34.0 31.0 34.0 29.0 34.0 4 35.32632533949197 37.0 35.0 37.0 33.0 37.0 5 35.42019936126713 37.0 35.0 37.0 33.0 37.0 6 35.40590273275862 37.0 35.0 37.0 33.0 37.0 7 35.37784504189378 37.0 35.0 37.0 33.0 37.0 8 35.35942843363512 37.0 35.0 37.0 33.0 37.0 9 36.976386259584366 39.0 37.0 39.0 33.0 39.0 10-11 36.97684256105415 39.0 37.0 39.0 33.0 39.0 12-13 36.92994523824946 39.0 37.0 39.0 33.0 39.0 14-15 38.28874044629249 40.0 38.0 41.0 33.0 41.0 16-17 38.287985592334046 40.0 38.0 41.0 33.0 41.0 18-19 38.294433568002134 40.0 38.0 41.0 33.0 41.0 20-21 38.36155587248258 40.0 38.0 41.0 33.0 41.0 22-23 38.33332225193307 40.0 38.0 41.0 33.0 41.0 24-25 38.36044383827143 40.0 38.0 41.0 33.0 41.0 26-27 38.34972197218751 40.0 38.0 41.0 33.0 41.0 28-29 38.28640101093838 40.0 38.0 41.0 33.0 41.0 30-31 38.21739275020576 40.0 38.0 41.0 33.0 41.0 32-33 38.18211860099221 40.0 38.0 41.0 33.0 41.0 34-35 38.106865688193366 40.0 38.0 41.0 32.5 41.0 36-37 38.01873789178238 40.0 38.0 41.0 32.0 41.0 38-39 37.92746680876735 40.0 37.0 41.0 32.0 41.0 40-41 37.87825061640223 40.0 37.0 41.0 32.0 41.0 42-43 37.70962066470171 40.0 37.0 41.0 31.5 41.0 44-45 37.50451665639557 40.0 36.5 41.0 31.0 41.0 46-47 37.349770633052074 40.0 36.0 41.0 31.0 41.0 48-49 37.202738147210766 39.0 36.0 41.0 31.0 41.0 50-51 37.068697671190144 39.0 36.0 40.0 30.0 41.0 52-53 36.91871342188915 39.0 35.0 40.0 30.0 41.0 54-55 36.73746563859259 39.0 35.0 40.0 30.0 41.0 56-57 36.702179950852454 38.5 35.0 40.0 30.0 41.0 58-59 36.766984628443986 39.0 35.0 40.0 30.0 41.0 60-61 37.070429668846415 39.0 35.0 41.0 31.0 41.0 62-63 37.0297287879354 39.0 35.0 41.0 31.0 41.0 64-65 36.813038670932414 38.5 35.0 40.5 31.0 41.0 66-67 36.59344346816091 38.0 35.0 40.0 31.0 41.0 68-69 36.30909242597653 37.0 35.0 40.0 31.0 41.0 70-71 36.054263599191884 37.0 35.0 39.5 30.5 41.0 72-73 35.75211262472584 36.0 34.0 39.0 30.0 41.0 74-75 35.420055816302025 36.0 34.0 39.0 30.0 40.5 76-77 35.1011364942493 35.5 34.0 38.5 30.0 40.0 78-79 34.781137205692 35.0 34.0 37.0 30.0 39.0 80-81 34.47260945132836 35.0 34.0 37.0 30.0 39.0 82-83 34.212430366123314 35.0 34.0 36.0 29.0 38.5 84-85 33.97816057038483 35.0 34.0 36.0 29.0 37.0 86-87 33.79677701594344 35.0 33.0 35.5 29.0 37.0 88-89 33.683798832466685 35.0 33.0 35.0 29.0 36.5 90-91 33.56824275868706 35.0 33.0 35.0 29.0 36.0 92-93 33.496467672644755 35.0 33.0 35.0 29.0 36.0 94-95 33.46449614312034 35.0 33.0 35.0 29.0 36.0 96-97 33.46275553708637 35.0 33.0 35.0 29.5 36.0 98-99 33.50201359782958 35.0 33.0 35.0 30.0 35.0 100 32.77092688195211 34.0 32.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 2.0 16 82.0 17 432.0 18 1478.0 19 5059.0 20 12354.0 21 23988.0 22 37401.0 23 52259.0 24 68510.0 25 84001.0 26 94901.0 27 100912.0 28 114801.0 29 138077.0 30 163605.0 31 194042.0 32 243554.0 33 317005.0 34 433893.0 35 610620.0 36 967025.0 37 1721563.0 38 2325149.0 39 1208084.0 40 51149.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.40389012331957 20.13845789724287 14.408535524234425 24.049116455203134 2 14.216269120078351 20.589342394627447 41.97752798465444 23.216860500639772 3 18.187458511668808 25.72045152685422 30.110584627386416 25.981505334090553 4 12.576304475499663 17.782699126456272 38.80179519084301 30.839201207201057 5 13.573040317414092 37.916850727028205 35.292839384821775 13.21726957073593 6 30.33014379567692 37.37764388989349 18.96517197925496 13.327040335174626 7 26.954334598335443 32.62806752604746 22.775713297507714 17.641884578109384 8 24.521086465646547 36.80802944820732 20.99534860490478 17.67553548124135 9 25.286194970888303 17.82596170718759 21.218416991696927 35.669426330227175 10-11 24.219042948951884 26.92667548092158 28.713421088291618 20.14086048183491 12-13 24.82117573608928 24.490768922037525 28.71795600744729 21.9700993344259 14-15 22.13299944748745 26.03587184384452 26.085638107401483 25.74549060126654 16-17 22.0777428350149 29.026198376415717 26.73998738225491 22.15607140631447 18-19 22.139993930844177 28.730011306645547 27.7621905416153 21.367804220894975 20-21 23.037103138638297 27.7089195331781 27.51475620128557 21.739221126898034 22-23 22.84692911158379 27.56678029174195 27.300187721670905 22.286102875003355 24-25 22.54704548877742 27.75504500965179 27.352956030837454 22.344953470733333 26-27 22.47829397421418 27.841878365271523 27.31923464677799 22.36059301373631 28-29 22.383235077062878 27.93824484742684 27.365997475522562 22.312522599987723 30-31 22.683076635728856 27.7396729799431 27.275493610097413 22.301756774230626 32-33 22.414591008667653 27.832073861030565 27.341720936802044 22.411614193499737 34-35 22.570291754125684 27.845881229482256 27.307605318080185 22.276221698311875 36-37 22.571247390235083 27.688178353185748 27.36686442535616 22.373709831223014 38-39 22.455123626227927 27.733758093851442 27.49034235139664 22.320775928523993 40-41 22.607457871006666 27.566261921953604 27.482914747148584 22.343365459891142 42-43 22.42007123626097 27.7202867566731 27.366972903161784 22.49266910390415 44-45 22.483867959900596 27.690658007020286 27.37614549357813 22.449328539500986 46-47 22.44122086887557 27.617486781642565 27.37432408435682 22.56696826512505 48-49 22.373432937568932 27.63825489778623 27.457452803590048 22.530859361054787 50-51 22.165367221499608 27.63634230728619 27.58625771629417 22.612032754920033 52-53 22.34176339079326 27.45902805131802 27.531483182849826 22.667725375038888 54-55 22.354264055335097 27.25018652042569 27.673646337045817 22.7219030871934 56-57 22.227411158194943 27.128500244736202 27.739235227519448 22.904853369549404 58-59 22.08967848624875 27.152855435977102 27.924503722688055 22.832962355086092 60-61 22.031083936557 26.969692982429912 28.303009170514876 22.696213910498216 62-63 21.888942516533618 27.194682015710907 28.285710804352448 22.63066466340303 64-65 21.75713405768291 27.502805925518782 27.93889093011866 22.801169086679646 66-67 21.594664213701467 27.700257077079343 27.696539474942504 23.008539234276686 68-69 21.682168586817184 27.844849655719333 27.714474796345257 22.758506961118226 70-71 21.69517132279639 27.932784488824197 27.358997040483136 23.01304714789628 72-73 22.066225636549504 27.774645656641876 27.0236469331266 23.13548177368202 74-75 22.23932708810752 27.617092251497876 27.078776240795634 23.064804419598968 76-77 22.481949799500146 27.144558600045844 27.17632471288358 23.197166887570425 78-79 22.731304036603532 26.95679441265735 27.010864378646517 23.301037172092606 80-81 23.093170014319135 26.992008345121025 26.737270311228063 23.177551329331774 82-83 22.758846969329298 27.295207466596782 26.648660295745515 23.297285268328405 84-85 23.2150284152976 27.3058332951226 26.583272870471014 22.895865419108784 86-87 23.073679011887297 27.53748940048082 26.622914017355637 22.765917570276244 88-89 22.924096588645906 27.740306822328048 26.601122195694394 22.73447439333166 90-91 23.17331092623511 27.83779723575408 26.870594243083566 22.118297594927235 92-93 23.266876802316805 27.612224004991724 27.1641434912754 21.95675570141607 94-95 22.93157599044734 27.652101025538194 27.607126921416352 21.809196062598115 96-97 23.146840479355614 27.43063287526234 27.797941566589046 21.624585078792997 98-99 23.950125877862085 29.452138789801786 28.218723108669742 18.37901222366639 100 23.15687485280589 30.67481086937387 21.87420880510497 24.294105472715266 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3589.0 1 2729.0 2 1944.5 3 1984.0 4 1930.5 5 2057.5 6 2395.5 7 2806.5 8 3078.0 9 3347.5 10 3772.5 11 4084.0 12 4421.5 13 4942.5 14 5637.0 15 6568.0 16 7705.0 17 9080.5 18 10905.0 19 13393.0 20 16597.0 21 20882.0 22 26623.0 23 33842.5 24 43115.0 25 54652.0 26 68655.0 27 84757.5 28 102912.5 29 123127.0 30 143142.0 31 163316.0 32 183084.5 33 201402.5 34 219989.0 35 237446.0 36 256572.5 37 276609.5 38 291812.5 39 303266.5 40 316964.0 41 330631.5 42 340897.5 43 351405.0 44 360671.0 45 371573.0 46 382119.5 47 387591.0 48 389233.0 49 385448.5 50 377820.0 51 369218.5 52 356781.0 53 339921.0 54 322916.0 55 302599.5 56 278166.0 57 251248.5 58 223696.0 59 194690.5 60 162758.0 61 132975.0 62 106485.0 63 83559.0 64 64456.5 65 49682.5 66 38624.5 67 30445.5 68 24180.5 69 19114.5 70 15279.0 71 12001.0 72 9437.0 73 7379.5 74 5719.0 75 4459.0 76 3368.0 77 2519.0 78 1904.0 79 1455.0 80 1085.0 81 769.0 82 586.0 83 427.0 84 316.0 85 248.5 86 195.5 87 145.5 88 88.5 89 56.5 90 44.5 91 38.0 92 29.5 93 17.0 94 7.0 95 4.0 96 4.0 97 3.0 98 3.0 99 8.0 100 37.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012296616691269191 3 0.023010169402338722 4 0.01966566803571972 5 0.01080273941417937 6 0.01392427402302377 7 0.01470465767523487 8 0.0018394757516404499 9 1.4492839255349002E-4 10-11 8.361253416547501E-5 12-13 0.00275363945851631 14-15 1.6722506833095001E-4 16-17 4.4593351554920004E-4 18-19 1.1148337888730002E-5 20-21 7.250514131168383E-5 22-23 1.6745411031742825E-5 24-25 2.7934089181367495E-5 26-27 0.002449596476518325 28-29 0.0034892939444507763 30-31 0.0026264719186377366 32-33 0.004028948558092205 34-35 0.005905216643542606 36-37 0.001065950952421506 38-39 0.0013001772917192963 40-41 5.737364673496616E-4 42-43 3.4617106816448736E-5 44-45 9.87005492104972E-5 46-47 0.0044611263414367185 48-49 6.774657056550536E-4 50-51 2.7818118982593135E-4 52-53 0.004257693420420682 54-55 2.0227036587437165E-4 56-57 1.4899296252600524E-4 58-59 6.80598112008897E-4 60-61 4.186628661647856E-5 62-63 0.0 64-65 0.0 66-67 0.001730367105024295 68-69 0.0 70-71 4.243464269375611E-4 72-73 0.0015951075969426643 74-75 1.2101984056591425E-4 76-77 1.2873802937479985E-5 78-79 2.6038984786853332E-5 80-81 0.003115622051727362 82-83 1.3329477559791204E-4 84-85 3.438953948428233E-4 86-87 0.01330734829042885 88-89 7.533684555089618E-4 90-91 8.968738062119162E-4 92-93 2.1329714297008876E-5 94-95 1.7342169457708193E-4 96-97 7.390660171458882E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3347.0 20-21 6925.0 22-23 7925.0 24-25 8798.0 26-27 12047.0 28-29 15934.0 30-31 23099.0 32-33 27012.0 34-35 35289.0 36-37 48063.0 38-39 53575.0 40-41 50067.0 42-43 51274.0 44-45 58729.0 46-47 64496.0 48-49 39729.0 50-51 39646.0 52-53 15612.0 54-55 15107.0 56-57 14582.0 58-59 14847.0 60-61 16083.0 62-63 72622.0 64-65 77395.0 66-67 81561.0 68-69 82833.0 70-71 82932.0 72-73 80434.0 74-75 81293.0 76-77 85207.0 78-79 90153.0 80-81 89103.0 82-83 87475.0 84-85 87713.0 86-87 91248.0 88-89 96505.0 90-91 102542.0 92-93 109058.0 94-95 132186.0 96-97 323684.0 98-99 608731.0 100-101 5885086.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.73096060579878 #Duplication Level Percentage of deduplicated Percentage of total 1 88.23440605862723 72.99717171712342 2 7.89751621908654 13.06738206409811 3 2.1112312156232527 5.2399255958838005 4 0.8188936278647656 2.7099142586887828 5 0.36107299233094364 1.4935957752174591 6 0.1923147126166685 0.9546228548043068 7 0.11438338666353787 0.6624133219213301 8 0.0688505059541543 0.4556854796625963 9 0.05057225794267775 0.37655023316417713 >10 0.14828462101977852 1.8646681657169744 >50 0.001982315297324857 0.11306218693194241 >100 4.920869731730195E-4 0.0650083467870578 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.344501366619E-5 0.0 0.0 0.0 3 0.0 3.344501366619E-5 0.0 0.0 0.0 4 0.0 1.0033504099857E-4 0.0 0.0 1.114833788873E-5 5 0.0 1.1148337888730001E-4 0.0 0.0 1.114833788873E-5 6 0.0 1.1148337888730001E-4 0.0 0.0 3.344501366619E-5 7 0.0 1.4492839255349E-4 0.0 0.0 3.344501366619E-5 8 2.229667577746E-5 1.6722506833095001E-4 0.0 1.114833788873E-5 3.344501366619E-5 9 2.229667577746E-5 2.2296675777460002E-4 0.0 2.229667577746E-5 3.344501366619E-5 10-11 2.229667577746E-5 2.2296675777460002E-4 0.0 7.803836522111E-5 3.344501366619E-5 12-13 2.229667577746E-5 2.2296675777460002E-4 0.0 1.83947575164045E-4 3.344501366619E-5 14-15 2.229667577746E-5 2.6756010932952E-4 0.0 3.1215346088444E-4 4.459335155492E-5 16-17 2.229667577746E-5 3.0100512299571E-4 0.0 5.2397188077031E-4 4.459335155492E-5 18-19 2.229667577746E-5 3.6789515032809E-4 0.0 8.1382866587729E-4 4.459335155492E-5 20-21 2.229667577746E-5 4.2363683977174E-4 0.0 0.001321078039814505 4.459335155492E-5 22-23 2.229667577746E-5 4.4035934660483503E-4 0.0 0.002079165016248145 4.459335155492E-5 24-25 2.229667577746E-5 4.73804360271025E-4 0.0 0.0029320128647359897 4.459335155492E-5 26-27 2.229667577746E-5 4.9052686710412E-4 0.0 0.003929789105777325 4.459335155492E-5 28-29 2.229667577746E-5 5.0167520499285E-4 0.0 0.007909745732053934 4.459335155492E-5 30-31 2.229667577746E-5 5.4626855654777E-4 0.0 0.018355738333793947 5.0167520499285E-5 32-33 2.229667577746E-5 5.51842725492135E-4 0.0 0.04775947951531932 1.1148337888730001E-4 34-35 2.229667577746E-5 6.2430692176888E-4 0.0 0.08738624654081012 1.2263171677603E-4 36-37 2.229667577746E-5 6.800486112125301E-4 0.0 0.14378568791989518 1.2263171677603E-4 38-39 2.229667577746E-5 6.9119694910126E-4 0.0 0.21169021400014962 1.2263171677603E-4 40-41 2.229667577746E-5 7.30216131711815E-4 0.0 0.27330707751116035 1.28205885720395E-4 42-43 2.229667577746E-5 7.52512807489275E-4 0.0 0.38168007012750466 1.3378005466476E-4 44-45 2.229667577746E-5 7.803836522111E-4 0.0 0.48882674557608874 1.3935422360912498E-4 46-47 2.229667577746E-5 7.9153199009983E-4 0.0 0.609524225728424 1.5607673044222E-4 48-49 2.229667577746E-5 7.97106159044195E-4 0.0 0.6902660628875511 1.6722506833095001E-4 50-51 2.229667577746E-5 9.2531204476459E-4 0.0 1.035251378854301 1.6722506833095001E-4 52-53 2.229667577746E-5 9.4760872054205E-4 0.0 1.4921771555617886 1.83947575164045E-4 54-55 2.229667577746E-5 9.4760872054205E-4 0.0 2.0990480768726947 2.0067008199714E-4 56-57 2.229667577746E-5 9.6990539631951E-4 0.0 2.7572961133438136 2.06244250941505E-4 58-59 2.229667577746E-5 0.0010144987478744299 0.0 3.4384762808520497 2.1181841988587E-4 60-61 2.229667577746E-5 0.001042369592596255 0.0 4.111356510802126 2.2296675777460002E-4 62-63 2.229667577746E-5 0.00105909209942935 0.0 4.599213350981895 2.5641177144079E-4 64-65 2.229667577746E-5 0.0011371304646504601 0.0 4.607730681128885 2.5641177144079E-4 66-67 2.229667577746E-5 0.001142704633594825 0.0 4.610874512413507 2.5641177144079E-4 68-69 2.229667577746E-5 0.00114827880253919 0.0 4.613834396122964 2.5641177144079E-4 70-71 2.229667577746E-5 0.001153852971483555 0.0 4.6163539204858175 2.6756010932952E-4 72-73 2.229667577746E-5 0.001176149647261015 0.0 4.618789832314505 3.1215346088444E-4 74-75 2.229667577746E-5 0.001198446323038475 0.0 4.620919164851253 3.1215346088444E-4 76-77 2.229667577746E-5 0.001254188012482125 0.0 4.622892420657559 3.1215346088444E-4 78-79 2.229667577746E-5 0.00128205885720395 0.0 4.624180053683706 3.1215346088444E-4 80-81 2.229667577746E-5 0.00128205885720395 0.0 4.62480993477442 3.3445013666190003E-4 82-83 2.229667577746E-5 0.00129320719509268 0.0 4.625294887472579 3.5674681243936E-4 84-85 2.229667577746E-5 0.001298781364037045 0.0 4.625411945020411 3.73469319272455E-4 86-87 2.229667577746E-5 0.001354523053480695 0.0 4.625478835047743 3.7904348821682E-4 88 2.229667577746E-5 0.00142698724975744 0.0 4.625478835047743 3.7904348821682E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12385 0.0 23.919903 1 TGTAGAT 11990 0.0 22.910027 94 TCAACGC 15960 0.0 22.85649 4 GTATCAA 17155 0.0 22.7487 1 ATCAACG 16070 0.0 22.72788 3 CAACGCA 16465 0.0 22.127909 5 AACGCAG 17105 0.0 21.499472 6 GTACATG 27600 0.0 20.170464 1 TACATGG 27470 0.0 19.685099 2 TATCAAC 19685 0.0 19.3211 2 GGTGTAG 14000 0.0 19.19733 94 GTGTAGA 12790 0.0 19.004852 94 ACGCAGA 19720 0.0 18.60374 7 ACATGGG 28105 0.0 18.595612 3 CGCAGAG 20125 0.0 18.07739 8 AGGTGTA 16900 0.0 17.30633 94 CATGGGG 21145 0.0 17.007107 4 TAGGTGT 19095 0.0 15.420434 94 AGAGTAC 18335 0.0 15.2576685 10-11 GGACCGA 1660 0.0 15.063355 6 >>END_MODULE