##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140250_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8251620 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.631977599550147 31.0 31.0 34.0 30.0 34.0 2 31.73737120710842 33.0 31.0 34.0 30.0 34.0 3 31.777153577115765 34.0 31.0 34.0 30.0 34.0 4 35.358727983111194 37.0 35.0 37.0 33.0 37.0 5 35.450121915454176 37.0 35.0 37.0 33.0 37.0 6 35.43432332075398 37.0 35.0 37.0 33.0 37.0 7 35.40691149131928 37.0 35.0 37.0 33.0 37.0 8 35.386024562449556 37.0 35.0 37.0 33.0 37.0 9 37.023318451407114 39.0 37.0 39.0 33.0 39.0 10-11 37.027218594651714 39.0 37.0 39.0 33.0 39.0 12-13 36.98594930450021 39.0 37.0 39.0 33.0 39.0 14-15 38.35166179489603 40.0 38.0 41.0 33.0 41.0 16-17 38.345655095605466 40.0 38.0 41.0 33.0 41.0 18-19 38.347149771802385 40.0 38.0 41.0 33.0 41.0 20-21 38.40871654110823 40.0 38.0 41.0 33.0 41.0 22-23 38.381345141099416 40.0 38.0 41.0 33.0 41.0 24-25 38.407815822912134 40.0 38.0 41.0 33.0 41.0 26-27 38.39805441261868 40.0 38.0 41.0 33.0 41.0 28-29 38.333373626919666 40.0 38.0 41.0 33.0 41.0 30-31 38.26438660385965 40.0 38.0 41.0 33.0 41.0 32-33 38.23148545224643 40.0 38.0 41.0 33.0 41.0 34-35 38.15603250827584 40.0 38.0 41.0 33.0 41.0 36-37 38.06429403265529 40.0 38.0 41.0 32.0 41.0 38-39 37.97744207285136 40.0 38.0 41.0 32.0 41.0 40-41 37.929525018999534 40.0 37.0 41.0 32.0 41.0 42-43 37.75692405586854 40.0 37.0 41.0 32.0 41.0 44-45 37.546122025778956 40.0 37.0 41.0 31.0 41.0 46-47 37.3934073284824 40.0 36.0 41.0 31.0 41.0 48-49 37.253348714698575 39.0 36.0 41.0 31.0 41.0 50-51 37.111473892971915 39.0 36.0 40.0 30.5 41.0 52-53 36.956465276997704 39.0 35.5 40.0 30.0 41.0 54-55 36.77426731347181 39.0 35.0 40.0 30.0 41.0 56-57 36.73968975373921 39.0 35.0 40.0 30.0 41.0 58-59 36.797748608165556 39.0 35.0 40.0 30.0 41.0 60-61 37.0990286015834 39.0 35.0 41.0 31.0 41.0 62-63 37.051277528505466 39.0 35.0 41.0 31.0 41.0 64-65 36.82961886308618 38.5 35.0 40.5 31.0 41.0 66-67 36.60306891991364 38.0 35.0 40.0 31.0 41.0 68-69 36.30122717836556 37.0 35.0 40.0 31.0 41.0 70-71 36.04213354211579 37.0 34.5 39.5 30.5 41.0 72-73 35.73339049379844 36.0 34.0 39.0 30.0 41.0 74-75 35.41925481277533 36.0 34.0 39.0 30.0 40.5 76-77 35.116722402218336 35.5 34.0 38.5 30.0 40.0 78-79 34.81712764542626 35.0 34.0 37.0 30.0 39.0 80-81 34.527329523166316 35.0 34.0 37.0 30.0 39.0 82-83 34.29016159261597 35.0 34.0 36.5 30.0 39.0 84-85 34.07233298671576 35.0 34.0 36.0 30.0 37.0 86-87 33.88918103596944 35.0 34.0 36.0 29.5 37.0 88-89 33.75148319746333 35.0 34.0 35.0 29.5 37.0 90-91 33.63815914337238 35.0 34.0 35.0 29.5 36.0 92-93 33.580365450033426 35.0 34.0 35.0 29.5 36.0 94-95 33.561409079611124 35.0 34.0 35.0 30.0 36.0 96-97 33.56875351002502 35.0 34.0 35.0 30.0 36.0 98-99 33.60715314609689 35.0 34.0 35.0 30.0 35.5 100 32.896267322756536 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 22.0 17 228.0 18 1190.0 19 3984.0 20 10309.0 21 20432.0 22 32467.0 23 45809.0 24 60226.0 25 75337.0 26 86235.0 27 91175.0 28 103051.0 29 124373.0 30 147097.0 31 172852.0 32 217946.0 33 282460.0 34 384427.0 35 546279.0 36 865916.0 37 1555211.0 38 2128470.0 39 1242460.0 40 53662.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.30096877946391 20.232039284407183 14.321890731759341 24.145101204369563 2 14.152223116161124 20.625004696613324 42.22541416857339 22.99735801865216 3 18.10335746858968 25.879465298189995 30.05615801774525 25.961019215475073 4 12.485083371302935 17.810912238890058 39.051718777443114 30.652285612363894 5 13.588829270261455 37.80019748443086 35.40367167843707 13.20730156687061 6 30.163016964687312 37.60698605695104 19.07652526376915 13.153471714592502 7 26.799063024748683 32.538484903358366 23.020993704773286 17.641458367119665 8 24.290410596328265 36.995734816448284 21.191008332826353 17.522846254397102 9 25.141245128830587 17.800461291684584 21.38900859613855 35.66928498334628 10-11 23.988397660966125 27.030694123766363 28.980422249616193 20.00048596565132 12-13 24.58152512164205 24.510567134890408 28.927850270528083 21.980057472939464 14-15 21.95724938452849 26.07866801113311 26.230650647713738 25.73343195662466 16-17 21.98781784231279 29.115456247388376 26.88033776820331 22.016388142095522 18-19 22.040056624039476 28.722690662280943 27.934015130848866 21.303237582830715 20-21 22.838180366499607 27.859614173290403 27.68643410688228 21.615771353327712 22-23 22.646023876433976 27.722371753439194 27.464050728473783 22.167553641653047 24-25 22.358165782549495 27.856311889897068 27.542313735987882 22.24320859156555 26-27 22.329963089503487 27.978945203586296 27.497608845975403 22.19348286093481 28-29 22.272438007721416 28.00971775540246 27.52172473121656 22.196119505659574 30-31 22.514096949720802 27.82900423601647 27.454328685993968 22.20257012826876 32-33 22.29500683464684 27.90079680878488 27.496608619730967 22.307587736837313 34-35 22.431805401346327 27.85571142284569 27.531360758818085 22.181122416989897 36-37 22.409792816296324 27.657884074095445 27.5886218929451 22.343701216663128 38-39 22.24221247536655 27.70674938806865 27.75424504768802 22.296793088876775 40-41 22.430296467167576 27.542055762826266 27.770945673646292 22.256702096359867 42-43 22.194617359948058 27.627310911259656 27.737367818658075 22.44070391013421 44-45 22.252752373097614 27.68640584290571 27.693306294202703 22.367535489793973 46-47 22.11740180604755 27.6392125861913 27.688845882282937 22.554539725478215 48-49 22.008152927791418 27.660000923916023 27.801958348553125 22.529887799739434 50-51 21.90742959650733 27.780678542769692 27.826154437433782 22.485737423289194 52-53 22.047303104345286 27.750575709321673 27.669768124142124 22.532353062190918 54-55 22.088931796941583 27.64671905129541 27.669382509802187 22.594966641960816 56-57 22.086125973566663 27.66152368173813 27.649069851738545 22.603280492956657 58-59 22.14618979248632 27.668997856225047 27.621047143523867 22.563765207764764 60-61 22.234871230866965 27.56566644788171 27.636571745964577 22.56289057528675 62-63 22.22547808138997 27.72894321256687 27.463889697870226 22.581689008172937 64-65 22.30825995041411 27.73604501011234 27.35336707308431 22.60232796638924 66-67 22.323815625280506 27.7492598694565 27.23393378216151 22.692990723101484 68-69 22.356299416550037 27.695658165273322 27.277138903354796 22.670903514821845 70-71 22.34710434896258 27.548908230574437 27.410117802186072 22.693869618276903 72-73 22.465318883496938 27.54987742344415 27.353045074412297 22.631758618646618 74-75 22.415998401759197 27.72266792054347 27.373158709889623 22.488174967807712 76-77 22.497144360146144 27.595901205048918 27.40082330794089 22.506131126864048 78-79 22.47320233217227 27.535911338043274 27.401647705209715 22.589238624574744 80-81 22.479317834765286 27.671611186681126 27.390338882250237 22.458732096303347 82-83 22.462669012006135 27.66835872967301 27.50860023190197 22.360372026418887 84-85 22.500842700745974 27.74958786607623 27.502511482411464 22.247057950766333 86-87 22.300104777372994 27.830571845315795 27.57077454775955 22.298548829551663 88-89 22.330452172644428 27.81087365068562 27.546917171542475 22.311757005127483 90-91 22.35328718657696 27.80961344261803 27.577390036943193 22.259709333861807 92-93 22.368153628659623 27.77194233952487 27.589665991384905 22.270238040430606 94-95 22.18412179995206 27.89509770759468 27.626542761156365 22.294237731296896 96-97 22.23523543370685 28.030488148483627 27.677236364547092 22.057040053262426 98-99 23.28333150533166 29.96849264193736 27.876746828250504 18.87142902448047 100 22.268378966658457 30.977856966913404 21.582398287061043 25.1713657793671 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2796.0 1 2075.0 2 1476.5 3 1550.0 4 1475.5 5 1536.5 6 1813.5 7 2154.0 8 2387.0 9 2636.5 10 2973.0 11 3241.5 12 3507.0 13 3947.0 14 4589.5 15 5386.5 16 6356.5 17 7628.5 18 9221.0 19 11450.5 20 14591.0 21 18758.0 22 24450.0 23 31717.5 24 40823.5 25 52743.5 26 67144.0 27 83005.0 28 100998.0 29 120787.0 30 140223.0 31 159573.0 32 178960.0 33 196195.0 34 213756.0 35 231446.0 36 249219.5 37 266479.5 38 280457.0 39 293052.0 40 306177.5 41 316560.0 42 324256.5 43 331497.0 44 337264.0 45 343898.0 46 348014.0 47 348744.5 48 348009.0 49 343676.5 50 337243.0 51 327862.0 52 315398.5 53 300523.5 54 284304.0 55 266854.5 56 246280.5 57 223258.5 58 198294.0 59 171759.0 60 144098.0 61 118409.0 62 96121.5 63 76020.0 64 57939.0 65 44040.5 66 34232.0 67 27214.5 68 21714.0 69 16968.0 70 13361.0 71 10375.0 72 7937.5 73 6121.0 74 4711.0 75 3613.5 76 2733.5 77 2015.0 78 1498.0 79 1120.0 80 837.0 81 642.5 82 502.0 83 343.0 84 234.5 85 180.0 86 147.0 87 118.0 88 79.0 89 49.0 90 34.5 91 31.0 92 28.5 93 20.0 94 14.0 95 11.5 96 10.5 97 10.0 98 6.0 99 5.5 100 17.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012046119428669766 3 0.0225773848044384 4 0.01937801304471122 5 0.010216175732765202 6 0.013682161805802983 7 0.0150515898696256 8 0.001914775522867025 9 9.695065938567213E-5 10-11 9.695065938567213E-5 12-13 0.003132718181399531 14-15 2.3631723225257586E-4 16-17 5.332286266211968E-4 18-19 1.2118832423209017E-5 20-21 8.487428663162086E-5 22-23 0.0 24-25 4.857172711407987E-5 26-27 0.002236434112767085 28-29 0.003681016831920999 30-31 0.0026323972419057895 32-33 0.004028656443686433 34-35 0.005908724880655685 36-37 0.0011713229718880033 38-39 0.001360341885308283 40-41 6.92271138870085E-4 42-43 4.342227580117511E-5 44-45 6.856812305360032E-5 46-47 0.004257146708548463 48-49 6.878835621387625E-4 50-51 3.0482283062036785E-4 52-53 0.004350693494793255 54-55 1.7359214679414845E-4 56-57 2.5257313740911254E-4 58-59 6.530083014986345E-4 60-61 1.3174524106546592E-5 62-63 6.64461010491042E-6 64-65 0.0 66-67 0.0016584714484663167 68-69 0.0 70-71 3.801326898078547E-4 72-73 0.0014252884741951521 74-75 1.836730224596785E-4 76-77 2.8597499277376936E-5 78-79 1.4489139737755263E-5 80-81 0.003056176116850543 82-83 9.683678182769891E-5 84-85 3.248410073244093E-4 86-87 0.013534147589343 88-89 5.36588867243015E-4 90-91 9.632457021871678E-4 92-93 4.812362767455082E-5 94-95 2.1212181535807631E-4 96-97 9.183168821038071E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2798.0 20-21 5506.0 22-23 6308.0 24-25 7458.0 26-27 9191.0 28-29 11053.0 30-31 14431.0 32-33 15675.0 34-35 20011.0 36-37 28066.0 38-39 33133.0 40-41 30241.0 42-43 35254.0 44-45 44953.0 46-47 51647.0 48-49 49337.0 50-51 48198.0 52-53 48486.0 54-55 53816.0 56-57 62556.0 58-59 66386.0 60-61 65882.0 62-63 66232.0 64-65 70025.0 66-67 74833.0 68-69 76408.0 70-71 78010.0 72-73 77963.0 74-75 82122.0 76-77 89929.0 78-79 96140.0 80-81 94242.0 82-83 93358.0 84-85 94083.0 86-87 94496.0 88-89 95985.0 90-91 98972.0 92-93 101992.0 94-95 120798.0 96-97 290127.0 98-99 528754.0 100-101 5216765.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.28673926052518 #Duplication Level Percentage of deduplicated Percentage of total 1 90.08446683917394 77.73094901575229 2 7.122014739621181 12.290708576946201 3 1.6693774539729689 4.321354112950948 4 0.5526028596192267 1.9072919545033924 5 0.23719136331043036 1.0233234660407802 6 0.11743618247904239 0.6079911154392352 7 0.06296821575892063 0.3803325410423333 8 0.03824530707118188 0.2640050271351832 9 0.02948393200709138 0.2289665118123852 >10 0.08442783773576469 1.1215167986047376 >50 0.0015317906782183835 0.08576036437739343 >100 2.534785721072699E-4 0.037800515395162465 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2118832423209018E-5 2 0.0 0.0 0.0 3.6356497269627055E-5 1.2118832423209018E-5 3 0.0 0.0 0.0 3.6356497269627055E-5 1.2118832423209018E-5 4 0.0 3.6356497269627055E-5 0.0 6.059416211604509E-5 1.2118832423209018E-5 5 0.0 6.059416211604509E-5 0.0 8.483182696246312E-5 1.2118832423209018E-5 6 0.0 6.059416211604509E-5 0.0 8.483182696246312E-5 1.2118832423209018E-5 7 0.0 6.059416211604509E-5 0.0 9.695065938567215E-5 1.2118832423209018E-5 8 1.2118832423209018E-5 8.483182696246312E-5 0.0 1.0906949180888116E-4 1.2118832423209018E-5 9 1.2118832423209018E-5 1.6966365392492624E-4 0.0 1.4542598907850822E-4 1.2118832423209018E-5 10-11 1.2118832423209018E-5 1.6966365392492624E-4 0.0 1.878419025597398E-4 1.2118832423209018E-5 12-13 1.2118832423209018E-5 1.6966365392492624E-4 0.0 2.2419839982936682E-4 1.2118832423209018E-5 14-15 1.2118832423209018E-5 2.3025781604097136E-4 0.0 2.666143133105984E-4 1.2118832423209018E-5 16-17 1.2118832423209018E-5 2.3025781604097136E-4 0.0 3.5144614027306155E-4 1.2118832423209018E-5 18-19 1.2118832423209018E-5 2.544954808873894E-4 0.0 4.0598088617750216E-4 2.4237664846418037E-5 20-21 1.2118832423209018E-5 2.666143133105984E-4 0.0 5.211097941979878E-4 3.6356497269627055E-5 22-23 1.2118832423209018E-5 3.2114905921503897E-4 0.0 7.695458588737726E-4 3.6356497269627055E-5 24-25 1.2118832423209018E-5 3.45386724061457E-4 0.0 0.001320952734129783 3.6356497269627055E-5 26-27 1.2118832423209018E-5 3.6356497269627057E-4 0.0 0.002914579197781769 3.6356497269627055E-5 28-29 1.2118832423209018E-5 3.6356497269627057E-4 0.0 0.01463349015102489 3.6356497269627055E-5 30-31 1.2118832423209018E-5 3.878026375426886E-4 0.0 0.053456169818774976 4.8475329692836074E-5 32-33 1.2118832423209018E-5 3.878026375426886E-4 0.0 0.156399591837724 6.059416211604509E-5 34-35 1.2118832423209018E-5 4.483967996587337E-4 0.0 0.29689927553619777 6.059416211604509E-5 36-37 1.2118832423209018E-5 5.150503779863833E-4 0.0 0.5002108676841639 6.059416211604509E-5 38-39 1.2118832423209018E-5 5.211097941979878E-4 0.0 0.7432540519316206 6.059416211604509E-5 40-41 1.2118832423209018E-5 6.059416211604509E-4 0.0 0.9638713367799293 6.059416211604509E-5 42-43 1.2118832423209018E-5 6.241198697952645E-4 0.0 1.2449858330848973 6.059416211604509E-5 44-45 1.2118832423209018E-5 6.90773448122914E-4 0.0 1.4689176186009534 6.059416211604509E-5 46-47 1.2118832423209018E-5 7.513676102389592E-4 0.0 1.682518099476224 6.059416211604509E-5 48-49 1.2118832423209018E-5 7.574270264505637E-4 0.0 1.8356759036407397 6.66535783276496E-5 50-51 1.2118832423209018E-5 8.604371020478403E-4 0.0 2.010362813605086 7.271299453925411E-5 52-53 1.2118832423209018E-5 8.725559344710493E-4 0.0 2.1823472239390567 7.271299453925411E-5 54-55 1.2118832423209018E-5 8.967935993174674E-4 0.0 2.345866629825416 7.271299453925411E-5 56-57 1.2118832423209018E-5 9.089124317406764E-4 0.0 2.4754775425916367 8.483182696246314E-5 58-59 1.2118832423209018E-5 9.270906803754899E-4 0.0 2.5345932071520503 9.695065938567215E-5 60-61 1.2118832423209018E-5 9.452689290103034E-4 0.0 2.5565464720866933 9.695065938567215E-5 62-63 1.2118832423209018E-5 9.573877614335125E-4 0.0 2.568738017504441 9.695065938567215E-5 64-65 1.2118832423209018E-5 0.0010543384208191846 0.0 2.572828123447275 9.695065938567215E-5 66-67 1.2118832423209018E-5 0.0011028137505120206 0.0 2.5762213965257734 9.695065938567215E-5 68-69 1.2118832423209018E-5 0.0011270514153584386 0.0 2.5792208075505174 1.0301007559727665E-4 70-71 1.2118832423209018E-5 0.0011391702477816477 0.0 2.581771821775603 1.0906949180888116E-4 72-73 1.2118832423209018E-5 0.0011391702477816477 0.0 2.5841471129305518 1.0906949180888116E-4 74-75 1.2118832423209018E-5 0.001145229663993252 0.0 2.5864496910909613 1.0906949180888116E-4 76-77 1.2118832423209018E-5 0.0011573484964164612 0.0 2.5884856549380606 1.0906949180888116E-4 78-79 1.2118832423209018E-5 0.0011634079126280658 0.0 2.5899459742450572 1.0906949180888116E-4 80-81 1.2118832423209018E-5 0.0011634079126280658 0.0 2.5907094606877195 1.0906949180888116E-4 82-83 1.2118832423209018E-5 0.0011634079126280658 0.0 2.591145738654955 1.0906949180888116E-4 84-85 1.2118832423209018E-5 0.0011634079126280658 0.0 2.5912487487305524 1.0906949180888116E-4 86-87 1.2118832423209018E-5 0.0011755267450512749 0.0 2.5913335805575146 1.0906949180888116E-4 88 1.2118832423209018E-5 0.001272477404436947 0.0 2.591345699389938 1.0906949180888116E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6300 0.0 36.759876 1 GTATCAA 10375 0.0 31.770197 1 TCAACGC 10950 0.0 28.731892 4 ATCAACG 11155 0.0 28.243103 3 CAACGCA 11380 0.0 27.681505 5 AACGCAG 12020 0.0 26.453505 6 TATCAAC 12815 0.0 25.320246 2 ACGCAGA 14360 0.0 21.994493 7 CGCAGAG 15010 0.0 21.011099 8 GTACATG 24265 0.0 19.670341 1 TACATGG 24170 0.0 19.021507 2 ACATGGG 24705 0.0 17.777336 3 GCAGAGT 18980 0.0 16.503332 9 CATGGGG 18665 0.0 15.800914 4 AGAGTAC 16010 0.0 15.675934 10-11 CCGTCGA 375 1.3082172E-8 14.834361 9 CAGAGTA 18360 0.0 14.578451 10-11 TATACCG 580 1.2732926E-11 13.283075 5 GTGTAGC 4525 0.0 13.244231 1 ATGGGGG 11480 0.0 12.750828 5 >>END_MODULE