##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140246_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7657917 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.444177835826636 31.0 31.0 34.0 30.0 34.0 2 31.547145261563948 31.0 31.0 34.0 30.0 34.0 3 31.657844816025037 31.0 31.0 34.0 30.0 34.0 4 35.301565948024766 37.0 35.0 37.0 33.0 37.0 5 35.4211466381785 37.0 35.0 37.0 33.0 37.0 6 35.56126581157774 37.0 35.0 37.0 33.0 37.0 7 35.52975828805666 37.0 35.0 37.0 33.0 37.0 8 35.477908157009274 37.0 35.0 37.0 33.0 37.0 9 37.14182198631821 39.0 37.0 39.0 33.0 39.0 10-11 37.144375748653324 39.0 37.0 39.0 33.5 39.0 12-13 37.094223533631926 39.0 37.0 39.0 33.0 39.0 14-15 38.477580718098665 40.0 38.0 41.0 33.0 41.0 16-17 38.478934872237446 40.0 38.0 41.0 33.0 41.0 18-19 38.4969976822679 40.0 38.0 41.0 33.5 41.0 20-21 38.55435118249288 40.0 38.0 41.0 34.0 41.0 22-23 38.53760445530607 40.0 38.0 41.0 34.0 41.0 24-25 38.570292135151476 40.0 38.0 41.0 34.0 41.0 26-27 38.55728531036308 40.0 38.0 41.0 33.5 41.0 28-29 38.49316504552629 40.0 38.0 41.0 33.0 41.0 30-31 38.42464055923307 40.0 38.0 41.0 33.0 41.0 32-33 38.387744737516215 40.0 38.0 41.0 33.0 41.0 34-35 38.31760642588722 40.0 38.0 41.0 33.0 41.0 36-37 38.23565352526756 40.0 38.0 41.0 33.0 41.0 38-39 38.1504922767363 40.0 38.0 41.0 33.0 41.0 40-41 38.10489517343882 40.0 38.0 41.0 33.0 41.0 42-43 37.95425665639538 40.0 37.5 41.0 32.0 41.0 44-45 37.77920998785088 40.0 37.0 41.0 32.0 41.0 46-47 37.63464851615371 40.0 37.0 41.0 32.0 41.0 48-49 37.49854568044009 40.0 36.5 41.0 31.0 41.0 50-51 37.366682891314554 39.0 36.0 41.0 31.0 41.0 52-53 37.21554176392114 39.0 36.0 41.0 31.0 41.0 54-55 37.035063215972905 39.0 35.5 40.0 30.5 41.0 56-57 37.00362979293814 39.0 35.5 40.0 30.5 41.0 58-59 37.057971676704696 39.0 35.0 41.0 31.0 41.0 60-61 37.348728014604404 39.0 36.0 41.0 31.5 41.0 62-63 37.29652282778642 39.0 35.0 41.0 31.5 41.0 64-65 37.07377277224765 39.0 35.0 41.0 31.0 41.0 66-67 36.846324334032786 38.0 35.0 40.5 31.0 41.0 68-69 36.544263011331 37.5 35.0 40.0 31.0 41.0 70-71 36.2783718838919 37.0 35.0 40.0 31.0 41.0 72-73 35.9621321143115 36.5 35.0 39.0 31.0 41.0 74-75 35.64075046691881 36.0 34.0 39.0 31.0 41.0 76-77 35.32864329351263 36.0 34.0 38.5 30.0 40.0 78-79 35.01926354213451 35.0 34.0 37.0 30.0 39.0 80-81 34.719364753459594 35.0 34.0 37.0 30.0 39.0 82-83 34.47106036310476 35.0 34.0 36.5 30.0 39.0 84-85 34.2424360736011 35.0 34.0 36.0 30.0 37.5 86-87 34.04997923103478 35.0 34.0 36.0 30.0 37.0 88-89 33.90733764956293 35.0 34.0 35.5 30.0 37.0 90-91 33.78622288333241 35.0 34.0 35.0 30.0 36.0 92-93 33.721314218578044 35.0 34.0 35.0 30.0 36.0 94-95 33.6972903274156 35.0 34.0 35.0 30.0 36.0 96-97 33.69318839004151 35.0 34.0 35.0 30.0 36.0 98-99 33.722698056301 35.0 34.0 35.0 30.0 36.0 100 33.03583567024151 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 4.0 16 40.0 17 258.0 18 1072.0 19 3666.0 20 9058.0 21 17383.0 22 27068.0 23 38006.0 24 50608.0 25 63412.0 26 71324.0 27 74512.0 28 85548.0 29 104466.0 30 122705.0 31 147094.0 32 187428.0 33 246365.0 34 338622.0 35 482923.0 36 771592.0 37 1419906.0 38 2057761.0 39 1277390.0 40 59704.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.20032901897474 20.391106354378092 14.452938050908623 23.955626575738545 2 14.129657432772696 20.85898303880576 42.103913173396194 22.907446355025357 3 17.90150232471692 25.981044646032675 30.33991662444599 25.77753640480442 4 12.344422104540822 18.083828362320205 39.308196718742124 30.26355281439685 5 13.403927103891478 38.05431894711658 35.563690587508866 12.97806336148308 6 29.924707646255232 37.761564200281576 19.280667431126762 13.033060722336426 7 26.677753256038045 32.77376226671079 23.141398550654603 17.407085926596558 8 24.1797529667315 36.96105933933109 21.411826496385235 17.44736119755218 9 25.22541098402813 17.80485279190734 21.515295118074786 35.45444110598975 10-11 23.77463677114117 27.171769906500636 29.21284167109237 19.840751651265823 12-13 24.423582623948295 24.73402876507521 29.059446002573363 21.782942608403136 14-15 21.823552505951863 26.357864367097577 26.402210737057953 25.416372389892604 16-17 21.77013689575079 29.32695000999625 27.08375474071057 21.819158353542388 18-19 21.819292730508714 28.9682551341811 28.145576952370394 21.066875182939796 20-21 22.744290020447057 28.036467784632514 27.881699043842197 21.337543151078236 22-23 22.459877074970986 27.931168990411077 27.662857101026344 21.946096833591593 24-25 22.15406619995954 28.114082297699216 27.702861312400078 22.028990189941165 26-27 22.14085301110707 28.23823459537006 27.604188454392403 22.01672393913047 28-29 22.05048759477951 28.27325494248819 27.69133042711888 21.984927035613417 30-31 22.33409483907062 28.071749449974405 27.626635200811116 21.96752051014386 32-33 22.071984307226124 28.131615769551736 27.64146317454095 22.154936748681195 34-35 22.230405919358855 28.075946759562353 27.735073844705525 21.958573476373257 36-37 22.207968157813436 27.89741883463961 27.762135525914854 22.132477481632097 38-39 22.048886125274635 27.92981967416988 27.953883016208597 22.067411184346888 40-41 22.186836447331853 27.748621835497424 27.975413795740423 22.0891279214303 42-43 21.973558619442 27.80429813665759 27.91583273113477 22.30631051276564 44-45 22.025776526166087 27.873025024282455 27.940683281879057 22.1605151676724 46-47 21.89016978598833 27.84737123865032 27.891960665026787 22.370498310334565 48-49 21.79386424080324 27.908478417715305 27.97583476875749 22.32182257272396 50-51 21.686219173092 28.011834978024414 27.98874858887958 22.313197260004 52-53 21.855892189387202 27.95269478600287 27.848051941692702 22.34336108291723 54-55 21.904460267590782 27.852522789954463 27.8393111215311 22.403705820923644 56-57 21.914173976419466 27.90056959085464 27.770022173960466 22.415234258765423 58-59 21.949148535087946 27.84718306230949 27.809029642652224 22.394638759950343 60-61 22.056274995205094 27.771154686690203 27.783903118188004 22.3886671999167 62-63 22.087221996236988 27.91527182670015 27.58441985916728 22.413086317895587 64-65 22.179392845709565 27.92164139232906 27.456887524500484 22.44207823746089 66-67 22.174230514772375 27.92981557211864 27.365220085540866 22.530733827568124 68-69 22.191006326292108 27.845209511212097 27.42810526736768 22.535678895128118 70-71 22.213147150699985 27.756399491453255 27.50418504381128 22.526268314035473 72-73 22.354033511767398 27.713785867313558 27.46788572972153 22.464294891197518 74-75 22.284884977527955 27.874818885617508 27.533828314211302 22.30646782264324 76-77 22.376817780446974 27.79944431837799 27.510117931504404 22.313619969670633 78-79 22.331601646782175 27.755805621080647 27.54154498812843 22.371047744008745 80-81 22.330984794664747 27.87287655233513 27.49957019468685 22.296568458313274 82-83 22.325011836785897 27.871936093496448 27.692025041378166 22.111027028339493 84-85 22.42398546673844 27.930130546707353 27.615685645775894 22.030198340778306 86-87 22.168471446863744 28.00469322072272 27.742213093735575 22.08462223867796 88-89 22.234954371245593 27.958868047613834 27.723915877404643 22.082261703735927 90-91 22.230864737057814 28.038760804946655 27.6958534814886 22.034520976506926 92-93 22.208471763626907 27.995066956250337 27.736892802649688 22.05956847747307 94-95 22.064618992743767 28.095761712376827 27.801481602072435 22.038137692806966 96-97 22.15968187491454 28.233783170457087 27.826407698775448 21.78012725585293 98-99 23.192711715799224 30.162348477884173 27.975428285050874 18.669511521265733 100 22.143287274214885 31.191209739756992 21.753232077842735 24.912270908185388 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2448.0 1 1808.5 2 1300.0 3 1422.0 4 1379.5 5 1472.5 6 1754.0 7 2075.5 8 2350.5 9 2657.0 10 3049.5 11 3367.5 12 3695.5 13 4150.5 14 4727.0 15 5578.5 16 6700.0 17 8002.5 18 9678.5 19 11981.5 20 15070.5 21 19185.0 22 24696.5 23 31764.0 24 40528.5 25 51994.0 26 66462.0 27 82605.5 28 99947.5 29 119544.5 30 138303.5 31 155597.0 32 174231.0 33 191703.5 34 208196.0 35 223954.5 36 240545.0 37 257208.5 38 270092.5 39 280094.5 40 290458.5 41 299177.5 42 304874.5 43 310842.5 44 315314.5 45 320923.5 46 325417.5 47 325910.5 48 324068.0 49 319322.5 50 313650.0 51 303821.5 52 288943.0 53 272221.0 54 254843.5 55 236125.0 56 216045.0 57 194712.5 58 172936.5 59 150069.0 60 125332.5 61 102152.5 62 81728.0 63 63910.5 64 49169.0 65 37699.5 66 28830.5 67 22556.0 68 17792.5 69 13816.0 70 10763.0 71 8229.5 72 6313.5 73 4870.0 74 3787.5 75 2979.0 76 2248.5 77 1692.0 78 1279.0 79 941.5 80 699.0 81 529.0 82 421.5 83 293.0 84 191.0 85 135.5 86 109.0 87 88.5 88 63.5 89 41.5 90 29.0 91 26.5 92 23.5 93 13.0 94 5.0 95 4.5 96 4.0 97 4.0 98 3.5 99 2.5 100 15.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011870068583924323 3 0.022408182277243276 4 0.019104411813290742 5 0.010094128729783831 6 0.014325044264647946 7 0.015918166780862213 8 0.0021285161487125024 9 2.089341004871168E-4 10-11 5.22335251217792E-5 12-13 0.0029773109319414146 14-15 2.4158005368822878E-4 16-17 6.006855389004608E-4 18-19 1.95875719206672E-5 20-21 8.491567155297569E-5 22-23 6.5360617731041445E-6 24-25 1.9621814382083556E-5 26-27 0.0027429278286590524 28-29 0.003925745603296001 30-31 0.0027896811466652876 32-33 0.004293747002431984 34-35 0.006338906541257353 36-37 0.0012024451126750532 38-39 0.001386209694129183 40-41 6.461457439678798E-4 42-43 6.685519385632858E-5 44-45 7.391402159740833E-5 46-47 0.0041038166915002795 48-49 9.258519233280237E-4 50-51 3.015132263573543E-4 52-53 0.004434348199089131 54-55 2.707586302751331E-4 56-57 2.1689057003179614E-4 58-59 6.563530778689529E-4 60-61 2.1366081744064824E-5 62-63 0.0 64-65 2.1762889833204858E-5 66-67 0.001839349729047663 68-69 0.0 70-71 4.41730836181499E-4 72-73 0.001786680899548409 74-75 1.6083712506855682E-4 76-77 1.5510565952632593E-5 78-79 3.144993806720946E-5 80-81 0.003310687697644067 82-83 6.47481886289555E-5 84-85 3.86032109822357E-4 86-87 0.014799633802863876 88-89 8.550106757818141E-4 90-91 0.0010231058570660935 92-93 2.6206132898987062E-5 94-95 2.8436214372089285E-4 96-97 8.182597016279641E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2163.0 20-21 4558.0 22-23 5178.0 24-25 6264.0 26-27 8235.0 28-29 10491.0 30-31 13545.0 32-33 14907.0 34-35 18900.0 36-37 27036.0 38-39 32312.0 40-41 28560.0 42-43 33775.0 44-45 43865.0 46-47 50776.0 48-49 48067.0 50-51 47449.0 52-53 46947.0 54-55 53254.0 56-57 60995.0 58-59 64027.0 60-61 63560.0 62-63 63869.0 64-65 68267.0 66-67 71543.0 68-69 72709.0 70-71 73804.0 72-73 75074.0 74-75 79582.0 76-77 86084.0 78-79 91783.0 80-81 90353.0 82-83 89590.0 84-85 91125.0 86-87 90451.0 88-89 90393.0 90-91 91727.0 92-93 94540.0 94-95 109987.0 96-97 262851.0 98-99 478462.0 100-101 4800859.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.93722764602157 #Duplication Level Percentage of deduplicated Percentage of total 1 89.95493881448608 77.30478054784432 2 7.095121918691273 12.194702150056987 3 1.7069205451595764 4.400640583891493 4 0.6186397685189742 2.126567464723887 5 0.2584624899083176 1.1105774916604323 6 0.13488805983599628 0.6955143542913714 7 0.06872443959626792 0.41341914673008157 8 0.04182683281264074 0.28755856425055937 9 0.03114799612287092 0.24090951901757 >10 0.08814334746734584 1.1325050878539928 >50 9.91806212316342E-4 0.054898383533638365 >100 1.7095517881476237E-4 0.023936650811068008 >500 2.302600949000288E-5 0.013990055334605343 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.3058381280444799E-5 0.0 3 0.0 0.0 0.0 2.6116762560889598E-5 0.0 4 0.0 2.6116762560889598E-5 0.0 1.0446705024355839E-4 0.0 5 0.0 2.6116762560889598E-5 0.0 1.436421940848928E-4 0.0 6 0.0 2.6116762560889598E-5 0.0 1.567005753653376E-4 0.0 7 1.3058381280444799E-5 2.6116762560889598E-5 0.0 1.697589566457824E-4 0.0 8 2.6116762560889598E-5 3.91751438413344E-5 0.0 1.828173379262272E-4 0.0 9 3.91751438413344E-5 9.14086689631136E-5 0.0 2.0893410048711679E-4 0.0 10-11 3.91751438413344E-5 9.14086689631136E-5 0.0 3.7216386649267677E-4 6.5291906402223995E-6 12-13 3.91751438413344E-5 9.7937859603336E-5 0.0 4.048098196937888E-4 1.3058381280444799E-5 14-15 3.91751438413344E-5 1.371130034446704E-4 0.0 4.24397391614456E-4 1.9587571920667198E-5 16-17 5.2233525121779196E-5 1.436421940848928E-4 0.0 4.7663091673623523E-4 2.6116762560889598E-5 18-19 7.83502876826688E-5 1.501713847251152E-4 0.0 5.22335251217792E-4 2.6116762560889598E-5 20-21 1.044670502435584E-4 1.6322976600556E-4 0.0 6.463898733820176E-4 2.6116762560889598E-5 22-23 1.240546221642256E-4 1.95875719206672E-4 0.0 0.0010707872649964737 3.9175143841334396E-5 24-25 1.30583812804448E-4 2.481092443284512E-4 0.0 0.0022264540083158386 5.2233525121779196E-5 26-27 1.436421940848928E-4 2.742260068893408E-4 0.0 0.00459655021071657 5.2233525121779196E-5 28-29 1.436421940848928E-4 2.872843881697856E-4 0.0 0.01892812366600474 5.2233525121779196E-5 30-31 1.501713847251152E-4 3.786930571328992E-4 0.0 0.06787746589575207 5.2233525121779196E-5 32-33 1.567005753653376E-4 3.786930571328992E-4 0.0 0.1889351895561156 5.2233525121779196E-5 34-35 1.567005753653376E-4 4.57043344815568E-4 0.0 0.3512182229188433 5.2233525121779196E-5 36-37 1.697589566457824E-4 5.484520137786816E-4 0.0 0.5862952027294106 5.2233525121779196E-5 38-39 1.697589566457824E-4 5.810979669797936E-4 0.0 0.8536198551120363 5.2233525121779196E-5 40-41 1.697589566457824E-4 6.268023014613504E-4 0.0 1.1019119167784137 5.2233525121779196E-5 42-43 1.697589566457824E-4 6.333314921015728E-4 0.0 1.4249697404659778 5.2233525121779196E-5 44-45 1.762881472860048E-4 6.85565017223352E-4 0.0 1.6745154067352779 5.2233525121779196E-5 46-47 1.828173379262272E-4 7.312693517049088E-4 0.0 1.9026518568952888 5.2233525121779196E-5 48-49 2.0240490984689438E-4 7.443277329853535E-4 0.0 2.062564794055616 5.2233525121779196E-5 50-51 2.350508630480064E-4 8.292072113082448E-4 0.0 2.246296218671474 5.2233525121779196E-5 52-53 2.5463843496867356E-4 8.357364019484671E-4 0.0 2.426867515017465 5.2233525121779196E-5 54-55 2.61167625608896E-4 8.683823551495792E-4 0.0 2.5960453736962674 5.2233525121779196E-5 56-57 2.676968162491184E-4 8.879699270702464E-4 0.0 2.728901344843513 5.2233525121779196E-5 58-59 2.8075519752956317E-4 8.879699270702464E-4 0.0 2.7890417198306015 5.2233525121779196E-5 60-61 2.872843881697856E-4 9.206158802713584E-4 0.0 2.8112997307231193 5.2233525121779196E-5 62-63 2.872843881697856E-4 9.402034521920255E-4 0.0 2.8248739180641422 5.2233525121779196E-5 64-65 2.9381357881000803E-4 0.0010838456462769184 0.0 2.829352942843334 5.2233525121779196E-5 66-67 3.003427694502304E-4 0.0010838456462769184 0.0 2.8329897020299386 5.2233525121779196E-5 68-69 3.068719600904528E-4 0.0010969040275573632 0.0 2.836430585497336 5.2233525121779196E-5 70-71 3.134011507306752E-4 0.0011295499807584752 0.0 2.8393099585696735 5.2233525121779196E-5 72-73 3.2645953201111997E-4 0.0011360791713986977 0.0 2.8420065143040856 7.83502876826688E-5 74-75 3.2645953201111997E-4 0.001155666743319365 0.0 2.8444092564596875 7.83502876826688E-5 76-77 3.2645953201111997E-4 0.001207900268441144 0.0 2.8466552980399236 7.83502876826688E-5 78-79 3.2645953201111997E-4 0.0012274878403618112 0.0 2.8480264280743706 7.83502876826688E-5 80-81 3.329887226513424E-4 0.0012274878403618112 0.0 2.848803401760557 8.48794783228912E-5 82-83 3.395179132915648E-4 0.0012536046029227007 0.0 2.8493126786304943 9.14086689631136E-5 84-85 3.395179132915648E-4 0.0012862505561238129 0.0 2.8494889667777805 9.14086689631136E-5 86-87 3.395179132915648E-4 0.0013188965093249249 0.0 2.849534671112262 9.14086689631136E-5 88 3.395179132915648E-4 0.0013450132718858144 0.0 2.849534671112262 9.14086689631136E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6175 0.0 37.538036 1 GTATCAA 10285 0.0 30.71398 1 TCAACGC 10665 0.0 27.455858 4 ATCAACG 10960 0.0 26.757551 3 CAACGCA 11160 0.0 26.274935 5 AACGCAG 11630 0.0 25.247154 6 TATCAAC 12315 0.0 24.81917 2 ACGCAGA 13850 0.0 21.1076 7 CGCAGAG 14145 0.0 20.635332 8 GTACATG 23345 0.0 19.602415 1 TACATGG 23295 0.0 19.149712 2 ACATGGG 23885 0.0 18.015047 3 CATGGGG 17020 0.0 16.401743 4 GCAGAGT 18345 0.0 15.747934 9 AGAGTAC 15575 0.0 15.548674 10-11 CAGAGTA 17515 0.0 14.496472 10-11 GTCTAGG 2195 0.0 13.613574 1 GTGTAGC 4360 0.0 13.31561 1 GTGGTAT 4530 0.0 13.287081 1 GTATACG 840 0.0 13.213039 1 >>END_MODULE