##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140245_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7328972 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.199255502681687 31.0 31.0 34.0 28.0 34.0 2 31.312894359536372 31.0 31.0 34.0 28.0 34.0 3 31.426075853475766 31.0 31.0 34.0 28.0 34.0 4 35.10290433637896 37.0 35.0 37.0 32.0 37.0 5 35.22927635690244 37.0 35.0 37.0 32.0 37.0 6 35.39762206759693 37.0 35.0 37.0 33.0 37.0 7 35.36936899199506 37.0 35.0 37.0 33.0 37.0 8 35.31256293515653 37.0 35.0 37.0 32.0 37.0 9 36.957188948190826 39.0 37.0 39.0 33.0 39.0 10-11 36.95592294526436 39.0 37.0 39.0 33.0 39.0 12-13 36.904592076487674 39.0 37.0 39.0 33.0 39.0 14-15 38.258877779857805 40.0 38.0 41.0 33.0 41.0 16-17 38.26162004712258 40.0 38.0 41.0 33.0 41.0 18-19 38.27648195408578 40.0 38.0 41.0 33.0 41.0 20-21 38.339130818480626 40.0 38.0 41.0 33.0 41.0 22-23 38.323771098164364 40.0 38.0 41.0 33.0 41.0 24-25 38.35413706735736 40.0 38.0 41.0 33.0 41.0 26-27 38.340156780329515 40.0 38.0 41.0 33.0 41.0 28-29 38.28090064670539 40.0 38.0 41.0 33.0 41.0 30-31 38.21189800268147 40.0 38.0 41.0 33.0 41.0 32-33 38.17563696820168 40.0 38.0 41.0 33.0 41.0 34-35 38.10816938712597 40.0 38.0 41.0 32.5 41.0 36-37 38.0233629275336 40.0 38.0 41.0 32.0 41.0 38-39 37.937396244855506 40.0 37.5 41.0 32.0 41.0 40-41 37.89254079217583 40.0 37.0 41.0 32.0 41.0 42-43 37.73300269635624 40.0 37.0 41.0 31.5 41.0 44-45 37.5486674240818 40.0 37.0 41.0 31.0 41.0 46-47 37.40451429163686 40.0 36.0 41.0 31.0 41.0 48-49 37.26978523333781 39.0 36.0 41.0 31.0 41.0 50-51 37.13612201904962 39.0 36.0 40.5 31.0 41.0 52-53 36.98879026244411 39.0 35.5 40.0 30.0 41.0 54-55 36.81349341632759 39.0 35.0 40.0 30.0 41.0 56-57 36.79056930670695 39.0 35.0 40.0 30.0 41.0 58-59 36.85642192076487 39.0 35.0 40.0 30.0 41.0 60-61 37.15623254299645 39.0 35.0 41.0 31.0 41.0 62-63 37.111701203155334 39.0 35.0 41.0 31.0 41.0 64-65 36.88495809322322 38.5 35.0 41.0 31.0 41.0 66-67 36.65027006372098 38.0 35.0 40.0 31.0 41.0 68-69 36.344629910286656 37.0 35.0 40.0 31.0 41.0 70-71 36.06443287457195 37.0 35.0 39.5 30.5 41.0 72-73 35.734530777426954 36.0 34.0 39.0 30.0 41.0 74-75 35.39835735035368 36.0 34.0 39.0 30.0 41.0 76-77 35.068817654364 35.0 34.0 38.5 30.0 40.0 78-79 34.73518697122108 35.0 34.0 37.0 30.0 39.0 80-81 34.41330388409827 35.0 34.0 37.0 29.0 39.0 82-83 34.14902819080504 35.0 34.0 36.0 29.0 39.0 84-85 33.91064306203716 35.0 33.5 36.0 29.0 37.0 86-87 33.71143518338644 35.0 33.0 36.0 29.0 37.0 88-89 33.55327089696244 35.0 33.0 35.0 29.0 36.5 90-91 33.41257915395852 35.0 33.0 35.0 29.0 36.0 92-93 33.32947609631432 35.0 33.0 35.0 29.0 36.0 94-95 33.31337433933539 35.0 33.0 35.0 29.0 36.0 96-97 33.34182217770869 35.0 33.0 35.0 29.0 36.0 98-99 33.461293189911295 35.0 33.0 35.0 29.5 35.0 100 32.73790871482264 34.0 32.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 2.0 16 54.0 17 308.0 18 1294.0 19 4183.0 20 10505.0 21 20326.0 22 31592.0 23 44030.0 24 57048.0 25 70021.0 26 77825.0 27 81555.0 28 93337.0 29 113041.0 30 133605.0 31 159539.0 32 201106.0 33 264553.0 34 362811.0 35 516570.0 36 832898.0 37 1466360.0 38 1882292.0 39 865428.0 40 38688.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.3310488837998 20.26738538501716 14.472971106998362 23.928594624184672 2 14.260414571434577 20.59560494564382 42.08682523519591 23.057155247725685 3 18.271248487865805 25.628272651442696 29.9347025517401 26.1657763089514 4 12.467190723481991 17.79305765057126 38.81738806702407 30.922363558922683 5 13.606933934695723 37.90649034987757 35.25075362477448 13.235822090652213 6 30.424069502239327 37.28815664123275 19.04705304222409 13.240720814303838 7 27.08952555631068 32.433110345072286 22.769339523509295 17.708024575107743 8 24.399674108119314 37.059162802806625 20.987770048920623 17.553393040153445 9 25.149993914556003 17.90794715324021 21.344926786377993 35.597132145825796 10-11 24.13923549500069 27.093131642266787 28.68512325308712 20.082509609645403 12-13 24.696992862285523 24.569638204841716 28.71770090560507 22.015668027267694 14-15 22.011982334182388 26.15828229832462 26.090960295027017 25.73877507246598 16-17 21.97212663074601 29.166334080645594 26.76162458071989 22.099914707888505 18-19 22.009296259814988 28.78140158595295 27.890232582509217 21.319069571722842 20-21 22.933010024715035 27.789690401327167 27.645125743061932 21.63217383089587 22-23 22.66808439306469 27.727266455282805 27.436592013799473 22.168057137853033 24-25 22.373622680448737 27.885252619277683 27.48973748498206 22.251387215291523 26-27 22.340381485076925 27.998293195949525 27.438531272530547 22.222794046443 28-29 22.25340767135554 28.06950116749578 27.480747813990313 22.19634334715837 30-31 22.521585523770995 27.857589718355293 27.40238043070794 22.218444327165773 32-33 22.250702273251434 27.90062424594449 27.483747861705428 22.364925619098646 34-35 22.396294584267952 27.863379832303576 27.542442973680796 22.197882609747676 36-37 22.371903750152576 27.67178286202133 27.584361365173876 22.371952022652213 38-39 22.220376862534664 27.624129121545206 27.80422793329944 22.351266082620693 40-41 22.37201963959439 27.454178609468222 27.854001957031894 22.31979979390549 42-43 22.123551868970928 27.46989390118335 27.86269515911352 22.543859070732196 44-45 22.06410335471354 27.460572502496426 27.91930477817268 22.556019364617352 46-47 21.928704098585534 27.412408960196537 28.0021917741049 22.656695167113025 48-49 21.794610929616525 27.410448366290545 28.12890455840993 22.666036145683005 50-51 21.579964508453973 27.476000213913988 28.14641084138453 22.797624436247517 52-53 21.665564527526886 27.43238092730126 28.099645517874894 22.802409027296957 54-55 21.618715228913967 27.308076794608805 28.20633094661823 22.866877029858994 56-57 21.598798542834697 27.40072509674446 28.10577787660761 22.894698483813233 58-59 21.598252157891256 27.371853436795995 28.101097230933565 22.928797174379184 60-61 21.628590918977906 27.18068973066362 28.089296933561776 23.101422416796698 62-63 21.647521533636645 27.167157559962895 28.007781262423254 23.17753964397721 64-65 21.7276005308595 27.251568094316447 27.890298904869216 23.130532469954836 66-67 21.60175865952059 27.371501883795794 27.59738212216237 23.42935733452125 68-69 21.69447734675211 27.465269318493945 27.446542141334483 23.393711193419463 70-71 21.71430250223309 27.473616128888565 27.29493229224057 23.517149076637775 72-73 21.919279494644314 27.385091071692795 26.967188609260013 23.728440824402874 74-75 21.950250840028946 27.33430440741731 26.828181592100268 23.887263160453475 76-77 22.245424928328898 27.13116149650723 26.94262280636667 23.6807907687972 78-79 22.310269433808838 26.872126041286613 27.10429003002642 23.713314494878126 80-81 22.474123899465283 26.825756335036026 27.04356964833341 23.656550117165274 82-83 22.426641666303883 26.97549955525375 27.030881268298696 23.566977510143673 84-85 22.554868017072774 26.809805913026146 27.110346585992268 23.52497948390881 86-87 22.24108057238439 27.01915774167208 27.358478328688424 23.381283357255107 88-89 22.323422241835907 27.19657403321223 27.17765259632029 23.30235112863157 90-91 22.34076805515662 27.388820066742237 27.354550245943027 22.915861632158116 92-93 22.04675130389169 27.39076322264522 27.649381559824782 22.91310391363831 94-95 21.815030037801115 27.463778844914977 27.990714596122057 22.730476521161854 96-97 21.94509920606969 27.45789847106568 28.131418846133794 22.465583476730842 98-99 23.30743768340519 29.478448958658447 28.18138900956883 19.032724348367527 100 22.718700612242188 30.606216051104298 21.887595953358037 24.787487383295485 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3059.0 1 2235.5 2 1526.0 3 1609.5 4 1523.0 5 1532.0 6 1773.5 7 2135.5 8 2409.0 9 2622.5 10 2896.0 11 3110.0 12 3363.0 13 3790.0 14 4310.5 15 5005.0 16 5955.5 17 7089.0 18 8393.0 19 10146.5 20 12502.0 21 15818.0 22 20436.0 23 26226.5 24 33393.0 25 42298.5 26 53377.0 27 65403.5 28 79213.0 29 95515.5 30 111176.0 31 126288.5 32 141674.0 33 156352.5 34 171267.0 35 184946.0 36 198955.0 37 214065.5 38 226939.0 39 238305.5 40 250868.5 41 262271.0 42 270763.0 43 279126.5 44 287426.5 45 296327.0 46 302166.0 47 306222.0 48 308742.5 49 307938.0 50 305919.5 51 299699.0 52 288148.5 53 273116.0 54 258093.0 55 239371.5 56 216793.5 57 193217.5 58 170119.0 59 146937.5 60 121230.0 61 97970.0 62 77738.5 63 60005.0 64 45911.0 65 35184.5 66 27453.0 67 21739.0 68 17047.0 69 13379.0 70 10489.0 71 7979.5 72 6183.5 73 4893.0 74 3886.5 75 3014.0 76 2263.5 77 1709.5 78 1276.5 79 967.5 80 742.5 81 567.5 82 451.5 83 316.5 84 219.5 85 167.0 86 132.5 87 104.5 88 66.0 89 42.0 90 32.0 91 24.5 92 20.5 93 14.5 94 8.0 95 6.5 96 7.5 97 6.5 98 4.5 99 6.0 100 18.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011270339141696816 3 0.021558275840049598 4 0.019034047339790628 5 0.009864957868579658 6 0.014913414869097603 7 0.01680999736388678 8 0.002196761019144295 9 1.0915582703822582E-4 10-11 1.0233358784833671E-4 12-13 0.0030768298746399908 14-15 2.1831165407645164E-4 16-17 5.594236135709074E-4 18-19 4.093343513933468E-5 20-21 8.1910122207172E-5 22-23 0.0 24-25 3.418216537317935E-5 26-27 0.0026005159286733226 28-29 0.003542412406144914 30-31 0.003108375252941463 32-33 0.004363676045913019 34-35 0.006594252413802693 36-37 9.861284823351633E-4 38-39 0.0013891840617046532 40-41 6.442576759145583E-4 42-43 4.858478760327217E-5 44-45 4.171429338177012E-5 46-47 0.00440174228202896 48-49 6.559161543775425E-4 50-51 3.145784020256053E-4 52-53 0.004026929583848693 54-55 2.3151730690088547E-4 56-57 9.136441152358238E-5 58-59 6.829001657687351E-4 60-61 4.2317862158027596E-5 62-63 7.067449476217185E-6 64-65 1.4232919304827216E-5 66-67 0.0016878962111901486 68-69 0.0 70-71 3.736455623105626E-4 72-73 0.0014803793116695118 74-75 2.243811847401348E-4 76-77 1.5127264542047406E-5 78-79 3.0627475034970835E-5 80-81 0.0030347951292081492 82-83 1.1808453656227889E-4 84-85 3.5134955359841433E-4 86-87 0.012613280389980582 88-89 5.356649868762077E-4 90-91 7.048591225762601E-4 92-93 4.277226557333912E-5 94-95 2.445820062939685E-4 96-97 7.178469401370388E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2606.0 20-21 5179.0 22-23 5769.0 24-25 7032.0 26-27 8743.0 28-29 10025.0 30-31 11012.0 32-33 11406.0 34-35 13307.0 36-37 15266.0 38-39 16589.0 40-41 15264.0 42-43 11893.0 44-45 12631.0 46-47 13388.0 48-49 13231.0 50-51 12890.0 52-53 12717.0 54-55 12603.0 56-57 12223.0 58-59 12647.0 60-61 13524.0 62-63 37729.0 64-65 63210.0 66-67 67305.0 68-69 68530.0 70-71 70126.0 72-73 69341.0 74-75 72968.0 76-77 78649.0 78-79 86634.0 80-81 90342.0 82-83 89888.0 84-85 92193.0 86-87 98668.0 88-89 107071.0 90-91 112266.0 92-93 118388.0 94-95 134863.0 96-97 285776.0 98-99 516072.0 100-101 4819008.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.65041019461655 #Duplication Level Percentage of deduplicated Percentage of total 1 87.62082551762093 72.41897170622295 2 8.509074220340402 14.065569493751426 3 2.1827410324675043 5.412133250461801 4 0.7917134972782659 2.6174178122665244 5 0.3607952051932058 1.4909935852734653 6 0.190722876702357 0.9457994395768251 7 0.10630019521654245 0.6150028316890533 8 0.06778412559225556 0.4481908627906663 9 0.0402278540529091 0.29923637748498944 >10 0.1281049107053187 1.569093732972855 >50 0.0013985207691687772 0.07332837887277742 >100 3.120440611384724E-4 0.04426252863660664 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.093343513933468E-5 2 0.0 4.093343513933468E-5 0.0 0.0 4.093343513933468E-5 3 0.0 4.093343513933468E-5 0.0 1.3644478379778228E-5 4.093343513933468E-5 4 0.0 1.2280030541800404E-4 0.0 2.7288956759556455E-5 4.093343513933468E-5 5 0.0 1.364447837977823E-4 0.0 4.093343513933468E-5 4.093343513933468E-5 6 0.0 1.500892621775605E-4 0.0 6.822239189889114E-5 5.457791351911291E-5 7 0.0 1.6373374055733873E-4 0.0 6.822239189889114E-5 5.457791351911291E-5 8 0.0 1.7737821893711695E-4 0.0 8.186687027866937E-5 6.822239189889114E-5 9 0.0 3.547564378742339E-4 0.0 1.0915582703822582E-4 6.822239189889114E-5 10-11 1.3644478379778228E-5 3.547564378742339E-4 0.0 1.910226973168952E-4 6.822239189889114E-5 12-13 1.3644478379778228E-5 3.547564378742339E-4 0.0 2.38778371646119E-4 6.822239189889114E-5 14-15 1.3644478379778228E-5 4.912012216720162E-4 0.0 2.933562851652319E-4 7.504463108878026E-5 16-17 1.3644478379778228E-5 5.184901784315727E-4 0.0 3.342897203045666E-4 8.186687027866937E-5 18-19 1.3644478379778228E-5 5.594236135709074E-4 0.0 3.956898730135686E-4 1.0915582703822582E-4 20-21 1.3644478379778228E-5 6.00357048710242E-4 0.0 5.253124176214618E-4 1.0915582703822582E-4 22-23 1.3644478379778228E-5 6.412904838495767E-4 0.0 0.001071091552812591 1.1597806622811493E-4 24-25 2.046671756966734E-5 6.958683973686897E-4 0.0 0.0024832950651196375 1.2280030541800404E-4 26-27 2.7288956759556455E-5 7.231573541282461E-4 0.0 0.006017214965482198 1.2280030541800404E-4 28-29 2.7288956759556455E-5 7.231573541282461E-4 0.0 0.026688599710846216 1.2280030541800404E-4 30-31 2.7288956759556455E-5 8.050242244069155E-4 0.0 0.0905584030065881 1.2962254460789315E-4 32-33 2.7288956759556455E-5 8.118464635968046E-4 0.0 0.23164230945349495 1.500892621775605E-4 34-35 2.7288956759556455E-5 9.073578122552521E-4 0.0 0.4257827700801695 1.500892621775605E-4 36-37 2.7288956759556455E-5 0.0010096914001035888 0.0 0.7232733321944742 1.500892621775605E-4 38-39 2.7288956759556455E-5 0.0010506248352429237 0.0 1.1357663803327398 1.500892621775605E-4 40-41 3.4111195949445566E-5 0.0011870696190407059 0.0 1.5613922389115418 1.500892621775605E-4 42-43 4.093343513933468E-5 0.001262114250129486 0.0 2.022091229165564 1.5691150136744962E-4 44-45 4.093343513933468E-5 0.0014531369474463812 0.0 2.566758339368741 1.6373374055733873E-4 46-47 4.093343513933468E-5 0.0015964039704340527 0.0 3.182588226561651 1.6373374055733873E-4 48-49 4.093343513933468E-5 0.001610048448813831 0.0 3.796016685559721 1.7737821893711695E-4 50-51 4.093343513933468E-5 0.0018215378637003936 0.0 4.4015245248583295 1.7737821893711695E-4 52-53 4.093343513933468E-5 0.001842004581270061 0.0 4.982560992182805 1.910226973168952E-4 54-55 4.093343513933468E-5 0.0018556490596498391 0.0 5.579240853969697 2.0466717569667342E-4 56-57 4.093343513933468E-5 0.0018692935380296173 0.0 6.232033633093427 2.1148941488656253E-4 58-59 4.093343513933468E-5 0.0018761157772195064 0.0 6.905477330244951 2.1831165407645164E-4 60-61 4.093343513933468E-5 0.0019579826474981758 0.0 7.5675688213845 2.1831165407645164E-4 62-63 4.093343513933468E-5 0.0020057383218273993 0.0 8.183207685880094 2.1831165407645164E-4 64-65 4.093343513933468E-5 0.002333205802942077 0.0 8.342493326485624 2.1831165407645164E-4 66-67 4.093343513933468E-5 0.0023468502813218553 0.0 8.345638378752163 2.3195613245622986E-4 68-69 4.093343513933468E-5 0.0023946059556510793 0.0 8.34827858531865 2.456006108360081E-4 70-71 4.093343513933468E-5 0.002442361629980303 0.0 8.350577679925642 2.456006108360081E-4 72-73 4.093343513933468E-5 0.002449183869170192 0.0 8.352706218552889 2.456006108360081E-4 74-75 4.093343513933468E-5 0.002503761782689305 0.0 8.354834757180134 2.456006108360081E-4 76-77 4.093343513933468E-5 0.0026060953705376415 0.0 8.356608539369503 2.456006108360081E-4 78-79 4.093343513933468E-5 0.0026606732840567544 0.0 8.357870653619635 2.456006108360081E-4 80-81 4.093343513933468E-5 0.002687962240816311 0.0 8.358552877538624 2.660673284056754E-4 82-83 4.093343513933468E-5 0.002708428958385978 0.0 8.359030434281916 3.00178524355121E-4 84-85 4.093343513933468E-5 0.0027288956759556455 0.0 8.359187345783283 3.00178524355121E-4 86-87 4.093343513933468E-5 0.00276982911109498 0.0 8.359221456979233 3.00178524355121E-4 88 4.093343513933468E-5 0.0028789849381332063 0.0 8.359221456979233 3.00178524355121E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5980 0.0 39.041637 1 GTATCAA 9860 0.0 29.21825 1 TCAACGC 10255 0.0 26.416304 4 ATCAACG 10500 0.0 25.884886 3 CAACGCA 10530 0.0 25.724136 5 AACGCAG 11175 0.0 24.316225 6 TATCAAC 11535 0.0 24.173496 2 GTACATG 22640 0.0 21.441666 1 TACATGG 22770 0.0 20.390644 2 ACGCAGA 13380 0.0 20.209793 7 CGCAGAG 13900 0.0 19.324108 8 ACATGGG 23150 0.0 19.29467 3 CATGGGG 17365 0.0 16.614952 4 TCGGTGG 2465 0.0 15.970882 94 GTGGTAT 4675 0.0 15.735777 1 GCAGAGT 17685 0.0 15.26258 9 GTATAGG 2425 0.0 14.7138605 1 CAGAGTA 17055 0.0 14.535575 10-11 AGAGTAC 14920 0.0 14.505418 10-11 GTGTAGG 3305 0.0 14.394801 1 >>END_MODULE