##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140244_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9713275 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.979928705817553 31.0 31.0 34.0 28.0 34.0 2 31.09237862615853 31.0 31.0 34.0 28.0 34.0 3 31.196963125207514 31.0 31.0 34.0 28.0 34.0 4 34.928631074483114 37.0 35.0 37.0 32.0 37.0 5 35.06143128862304 37.0 35.0 37.0 32.0 37.0 6 35.28257595918987 37.0 35.0 37.0 32.0 37.0 7 35.26842995796989 37.0 35.0 37.0 32.0 37.0 8 35.20242904684568 37.0 35.0 37.0 32.0 37.0 9 36.8490553392136 39.0 37.0 39.0 33.0 39.0 10-11 36.845213483608774 39.0 37.0 39.0 32.5 39.0 12-13 36.79301450849482 39.0 37.0 39.0 32.0 39.0 14-15 38.11273478821509 40.0 38.0 41.0 33.0 41.0 16-17 38.105943927254195 40.0 38.0 41.0 32.5 41.0 18-19 38.10746447516414 40.0 38.0 41.0 32.0 41.0 20-21 38.15396865610633 40.0 38.0 41.0 32.0 41.0 22-23 38.13556191505174 40.0 38.0 41.0 32.0 41.0 24-25 38.16212156235939 40.0 38.0 41.0 32.0 41.0 26-27 38.13854841219312 40.0 38.0 41.0 32.0 41.0 28-29 38.076015937621236 40.0 38.0 41.0 32.0 41.0 30-31 38.01055348580414 40.0 38.0 41.0 32.0 41.0 32-33 37.97089537960245 40.0 38.0 41.0 32.0 41.0 34-35 37.90586178367599 40.0 37.0 41.0 32.0 41.0 36-37 37.822413652613385 40.0 37.0 41.0 32.0 41.0 38-39 37.732185008417595 40.0 37.0 41.0 31.0 41.0 40-41 37.680742291382856 40.0 37.0 41.0 31.0 41.0 42-43 37.51956114819974 40.0 37.0 41.0 31.0 41.0 44-45 37.30922046143587 40.0 36.0 41.0 31.0 41.0 46-47 37.14718138262322 39.0 36.0 41.0 30.0 41.0 48-49 37.005265879353544 39.0 36.0 40.0 30.0 41.0 50-51 36.865538020904225 39.0 35.0 40.0 30.0 41.0 52-53 36.70738181440309 39.0 35.0 40.0 30.0 41.0 54-55 36.5214477139955 38.5 35.0 40.0 30.0 41.0 56-57 36.49040331086185 38.5 35.0 40.0 29.5 41.0 58-59 36.54086025149427 38.5 35.0 40.0 30.0 41.0 60-61 36.84805715241926 39.0 35.0 40.0 30.5 41.0 62-63 36.80202877854384 39.0 35.0 40.0 31.0 41.0 64-65 36.58030786541721 38.0 35.0 40.0 30.5 41.0 66-67 36.35496164977642 37.5 35.0 40.0 30.0 41.0 68-69 36.06500897436919 37.0 34.5 40.0 30.0 41.0 70-71 35.81620373548316 36.5 34.0 39.5 30.0 41.0 72-73 35.51730286510159 36.0 34.0 39.0 30.0 41.0 74-75 35.215081832053116 36.0 34.0 39.0 30.0 40.5 76-77 34.92201119481831 35.0 34.0 37.5 30.0 40.0 78-79 34.62829152531627 35.0 34.0 37.0 29.5 39.0 80-81 34.34259506404487 35.0 34.0 37.0 29.0 39.0 82-83 34.1078390792012 35.0 34.0 36.0 29.0 38.5 84-85 33.896973941374114 35.0 33.0 36.0 29.0 37.0 86-87 33.71442512533382 35.0 33.0 35.5 29.0 37.0 88-89 33.5802436389652 35.0 33.0 35.0 29.0 36.5 90-91 33.463681588726175 35.0 33.0 35.0 29.0 36.0 92-93 33.40182454878175 35.0 33.0 35.0 29.0 36.0 94-95 33.38696235692077 35.0 33.0 35.0 29.0 36.0 96-97 33.40206355842536 35.0 33.0 35.0 29.0 36.0 98-99 33.45392426771552 35.0 33.0 35.0 29.5 35.0 100 32.73267785779693 34.0 32.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 7.0 16 44.0 17 301.0 18 1641.0 19 5681.0 20 14491.0 21 28796.0 22 45826.0 23 63497.0 24 83745.0 25 102713.0 26 114429.0 27 119292.0 28 134523.0 29 159760.0 30 185202.0 31 221979.0 32 277399.0 33 357457.0 34 485061.0 35 686702.0 36 1085376.0 37 1849279.0 38 2330019.0 39 1310030.0 40 50025.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.284767496029914 20.11219696755214 14.434740085089736 24.16829545132821 2 14.383227221909783 20.535448601427618 41.69718695757197 23.384137219090626 3 18.246876722897085 25.443507305135128 29.89818675797648 26.411429213991312 4 12.633986419304588 17.710024639002775 38.422871106959306 31.23311783473333 5 13.776529640402584 37.711827846276606 35.12722592602126 13.384416587299544 6 30.743542331698436 37.02694064688607 18.851111343127872 13.378405678287617 7 27.317217576108288 32.32237623843935 22.572967785646767 17.7874383998056 8 24.62490278574813 36.70815298378002 20.93133775664614 17.73560647382571 9 25.38274466749797 17.698602653031976 21.04072328313119 35.877929396338864 10-11 24.238359979106924 26.90051796684462 28.586629430995224 20.274492623053224 12-13 24.7968369855986 24.378089476458026 28.584080964372227 22.24099257357115 14-15 22.12719515099752 25.908754279139472 25.90839394680805 26.055656623054958 16-17 22.184401519247775 28.978018430124365 26.583294451648825 22.254285598979042 18-19 22.313396990891178 28.56391528932905 27.602463000505136 21.520224719274637 20-21 23.126650383220355 27.61982876061258 27.411518702038222 21.84200215412884 22-23 22.908601439941307 27.497401429054218 27.190279313643234 22.403717817361237 24-25 22.635672057533725 27.638415122131 27.257265096748682 22.468647723586592 26-27 22.544159280744918 27.75824211016202 27.20952911746521 22.488069491627854 28-29 22.500976002924155 27.791214468359428 27.26214768648122 22.445661842235197 30-31 22.761027990001274 27.634639091032565 27.19005663939585 22.414276279570316 32-33 22.514167895732065 27.72773619541664 27.22056246906106 22.537533439790234 34-35 22.64619227499921 27.737527742569 27.230255181535345 22.386024800896447 36-37 22.65072176843099 27.601767382098046 27.262807620196405 22.48470322927456 38-39 22.511015041593314 27.67416647726418 27.356297626146674 22.458520854995832 40-41 22.6926175788287 27.544168235235013 27.31034101442268 22.452873171513613 42-43 22.575058546667655 27.63061644027051 27.246284298484614 22.54804071457722 44-45 22.597106366701304 27.65529268986622 27.223425810036428 22.524175133396053 46-47 22.598248086146246 27.60369835050353 27.167165414447947 22.63088814890228 48-49 22.530298205390853 27.592154769705846 27.28413127767538 22.593415747227922 50-51 22.404728079506455 27.675233620903562 27.338072637868187 22.5819656617218 52-53 22.60768553564393 27.60156568451065 27.195094413651844 22.59565436619358 54-55 22.632684055633035 27.506691842452973 27.235836857520372 22.624787244393616 56-57 22.54561147922708 27.599414803529836 27.271501810073573 22.58347190716951 58-59 22.553224038876014 27.59899088918904 27.316617000003163 22.531168071931784 60-61 22.578490663126246 27.563468846209467 27.349498701671305 22.508541788992982 62-63 22.58052050103209 27.632394680052542 27.27777842934885 22.50930638956652 64-65 22.560712146124647 27.573928024982962 27.28457750287402 22.580782326018365 66-67 22.575680704850413 27.587156034134342 27.1980356290316 22.639127631983644 68-69 22.512307658236956 27.568440454725934 27.264659337355994 22.654592549681116 70-71 22.4655842367011 27.416134236621552 27.35341993931601 22.76486158736134 72-73 22.52122226222593 27.454285693249226 27.306442468815412 22.718049575709436 74-75 22.393842196592786 27.5837688274275 27.32996872173427 22.692420254245445 76-77 22.541987527725585 27.513621782301474 27.235505649364416 22.70888504060852 78-79 22.49001775893767 27.51969611047707 27.22072657438779 22.76955955619747 80-81 22.49030483319271 27.544254218261944 27.2743533730898 22.691087575455548 82-83 22.48325652132386 27.558103623266746 27.354169574887248 22.604470280522147 84-85 22.55818190195588 27.563620033729563 27.321045231367247 22.55715283294731 86-87 22.437504651314597 27.586747731587064 27.373898197269792 22.601849419828547 88-89 22.472619858318147 27.58377035350172 27.327272878358293 22.61633690982184 90-91 22.477877573580212 27.66672654414813 27.30368246510985 22.551713417161807 92-93 22.44888485156015 27.614241653760164 27.36258414471439 22.574289349965294 94-95 22.31108629798261 27.69696878107977 27.432940397547377 22.55900452339024 96-97 22.388523918894133 27.86015440436763 27.42165562641042 22.329666050327816 98-99 23.489913158209166 29.789684804466148 27.603235848169227 19.117166189155455 100 22.434487519599795 30.799966665051343 21.29957336966865 25.46597244568021 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3340.0 1 2497.5 2 1793.0 3 1899.5 4 1831.5 5 1896.5 6 2203.5 7 2566.0 8 2804.5 9 3107.0 10 3553.0 11 3938.0 12 4356.5 13 4985.0 14 5748.0 15 6751.0 16 8034.5 17 9559.5 18 11652.5 19 14414.0 20 18124.5 21 23086.5 22 29669.0 23 38411.5 24 49446.5 25 63454.5 26 80325.0 27 98650.5 28 118889.0 29 141677.5 30 163630.5 31 184897.0 32 207295.0 33 228414.0 34 249463.5 35 269576.0 36 289337.0 37 308523.0 38 324778.5 39 339975.5 40 356395.0 41 371207.5 42 381250.5 43 391412.5 44 401339.5 45 410824.5 46 417868.0 47 421062.5 48 421890.5 49 419500.5 50 416360.5 51 408634.0 52 396175.0 53 379841.0 54 360435.0 55 338671.5 56 314678.5 57 289750.5 58 260909.0 59 228752.5 60 195012.5 61 162375.5 62 132602.0 63 105895.5 64 82857.5 65 64558.0 66 50173.0 67 39294.5 68 31176.5 69 24533.5 70 19479.5 71 15220.0 72 11700.5 73 8919.5 74 6705.0 75 5144.5 76 3929.0 77 2964.0 78 2289.0 79 1764.5 80 1322.5 81 991.0 82 766.0 83 528.0 84 356.0 85 263.0 86 207.0 87 161.0 88 115.0 89 79.0 90 55.5 91 46.0 92 35.5 93 22.5 94 12.5 95 8.5 96 8.0 97 6.5 98 4.0 99 4.5 100 18.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.011911533442633921 3 0.02224790299873112 4 0.018974032960046947 5 0.010552568520915963 6 0.013723486671591198 7 0.01497949970530022 8 0.0019869714385724693 9 1.1324707680982984E-4 10-11 8.75091048075958E-5 12-13 0.002697339465834129 14-15 2.0075618161742562E-4 16-17 4.838738736420003E-4 18-19 5.147594400446811E-6 20-21 6.180845035862035E-5 22-23 0.0 24-25 2.0638119297719884E-5 26-27 0.0023139924541119286 28-29 0.003496779677999354 30-31 0.0026178057966514375 32-33 0.0037745315304659544 34-35 0.005995918079164592 36-37 9.597264685165404E-4 38-39 0.0013093018026710073 40-41 5.794875033785716E-4 42-43 7.49602389475411E-5 44-45 5.3967140703237175E-5 46-47 0.0042520108581439895 48-49 7.69050295944287E-4 50-51 3.048262080484317E-4 52-53 0.00441645171870691 54-55 3.1023090768487083E-4 56-57 1.6515502361716836E-4 58-59 6.383824515910562E-4 60-61 5.807777322383505E-6 62-63 0.0 64-65 1.184430658987608E-5 66-67 0.0018792529694142003 68-69 0.0 70-71 3.120713417115718E-4 72-73 0.0016457690093899784 74-75 1.2509539305566701E-4 76-77 6.32570885102671E-6 78-79 3.200614927744838E-5 80-81 0.0031495865001205073 82-83 1.7055700638342395E-4 84-85 3.98347706825117E-4 86-87 0.013228655768934101 88-89 6.947411094933785E-4 90-91 8.497924192021858E-4 92-93 3.506247677549195E-5 94-95 1.4969593547734507E-4 96-97 6.563256962302985E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3982.0 20-21 7571.0 22-23 8487.0 24-25 9970.0 26-27 13323.0 28-29 17784.0 30-31 27543.0 32-33 33091.0 34-35 43424.0 36-37 60806.0 38-39 66080.0 40-41 66097.0 42-43 70584.0 44-45 80271.0 46-47 81834.0 48-49 81097.0 50-51 78190.0 52-53 78157.0 54-55 83815.0 56-57 86070.0 58-59 84707.0 60-61 83515.0 62-63 82742.0 64-65 87169.0 66-67 90714.0 68-69 92083.0 70-71 90832.0 72-73 87701.0 74-75 88361.0 76-77 92288.0 78-79 96098.0 80-81 93906.0 82-83 90918.0 84-85 92106.0 86-87 95850.0 88-89 102512.0 90-91 106344.0 92-93 111708.0 94-95 135346.0 96-97 337032.0 98-99 609456.0 100-101 5963711.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.77075605158961 #Duplication Level Percentage of deduplicated Percentage of total 1 90.07876424964113 77.26123713884621 2 6.978881770268433 11.971679316611592 3 1.677545134742026 4.3165294355246795 4 0.6017763520190057 2.0645925074655063 5 0.2554009773003329 1.0952967459682215 6 0.14393279211711713 0.7407134640300848 7 0.07932887310410432 0.4762868196001747 8 0.051719443201733106 0.35488125967839157 9 0.029569858401329634 0.22826062002784425 >10 0.10065356843803393 1.318142098765118 >50 0.002086228924563636 0.12177251633495181 >100 3.215639045365237E-4 0.041079104051828144 >500 1.9187937655147195E-5 0.009528973095368366 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.088556640268087E-5 0.0 0.0 0.0 3 0.0 3.088556640268087E-5 0.0 0.0 0.0 4 0.0 4.118075520357449E-5 0.0 0.0 1.0295188800893622E-5 5 0.0 4.118075520357449E-5 0.0 0.0 2.0590377601787245E-5 6 8.236151040714898E-5 4.118075520357449E-5 0.0 0.0 2.0590377601787245E-5 7 8.236151040714898E-5 5.147594400446811E-5 0.0 0.0 2.0590377601787245E-5 8 9.26566992080426E-5 5.147594400446811E-5 0.0 0.0 3.088556640268087E-5 9 1.0295188800893622E-4 8.236151040714898E-5 0.0 0.0 4.118075520357449E-5 10-11 1.0295188800893622E-4 8.236151040714898E-5 0.0 0.0 4.118075520357449E-5 12-13 1.0295188800893622E-4 8.236151040714898E-5 0.0 0.0 5.662353840491492E-5 14-15 1.0295188800893622E-4 1.389850488120639E-4 0.0 0.0 9.26566992080426E-5 16-17 1.389850488120639E-4 1.441326432125107E-4 0.0 0.0 1.1324707680982984E-4 18-19 1.4928023761295753E-4 1.4928023761295753E-4 0.0 0.0 1.441326432125107E-4 20-21 1.5957542641385113E-4 1.750182096151916E-4 0.0 1.5442783201340434E-5 1.750182096151916E-4 22-23 1.7501820961519156E-4 2.419369368210001E-4 0.0 5.662353840491492E-5 1.9560858721697882E-4 24-25 1.853133984160852E-4 2.6252731442278737E-4 0.0 1.9560858721697882E-4 2.1619896481876608E-4 26-27 2.1619896481876608E-4 2.676749088232342E-4 0.0 5.302022232460215E-4 2.2649415361965968E-4 28-29 2.1619896481876608E-4 2.676749088232342E-4 0.0 0.002707634654635023 2.316417480201065E-4 30-31 2.2649415361965968E-4 2.9856047522591506E-4 0.0 0.010017218703269494 2.367893424205533E-4 32-33 2.367893424205533E-4 2.9856047522591506E-4 0.0 0.02713811767915559 2.6252731442278737E-4 34-35 2.419369368210001E-4 3.345936360290427E-4 0.0 0.04579814738077528 2.779700976241278E-4 36-37 2.4708453122144694E-4 3.757743912326172E-4 0.0 0.06799457443550193 2.882652864250214E-4 38-39 2.5223212562189377E-4 3.9121717443395764E-4 0.0 0.09049985715425539 3.0885566402680866E-4 40-41 2.676749088232342E-4 4.118075520357449E-4 0.0 0.10895913067425765 3.140032584272555E-4 42-43 2.779700976241278E-4 4.221027408366385E-4 0.0 0.12892150175919037 3.2429844722814914E-4 44-45 3.0370806962636183E-4 5.250546288455747E-4 0.0 0.1439988057580991 3.294460416285959E-4 46-47 3.191508528277023E-4 6.177113280536173E-4 0.0 0.1583708893241466 3.397412304294895E-4 48-49 3.294460416285959E-4 6.177113280536173E-4 0.0 0.17010740455716533 3.603316080312768E-4 50-51 3.603316080312768E-4 6.743348664585323E-4 0.0 0.18032023184765178 3.8092198563306404E-4 52-53 3.603316080312768E-4 6.79482460858979E-4 0.0 0.18937485039803775 4.0665995763529807E-4 54-55 3.603316080312768E-4 7.052204328612131E-4 0.0 0.1979919234243857 4.3239792963753216E-4 56-57 3.603316080312768E-4 7.309584048634472E-4 0.0 0.2060839418218881 4.4269311843842576E-4 58-59 3.603316080312768E-4 7.36105999263894E-4 0.0 0.21371782431775072 4.581359016397662E-4 60-61 3.8092198563306404E-4 7.515487824652344E-4 0.0 0.22026556439511905 4.735786848411066E-4 62-63 4.3239792963753216E-4 7.721391600670217E-4 0.0 0.22609264125642484 4.838738736420003E-4 64-65 4.3239792963753216E-4 8.699434536755111E-4 0.0 0.2299481894623595 4.838738736420003E-4 66-67 4.581359016397662E-4 8.750910480759579E-4 0.0 0.23305733648022936 5.044642512437875E-4 68-69 4.63283496040213E-4 8.905338312772983E-4 0.0 0.23605838401568985 5.404974120469152E-4 70-71 4.735786848411067E-4 9.059766144786387E-4 0.0 0.23851893413910344 5.559401952482556E-4 72-73 5.044642512437875E-4 9.214193976799792E-4 0.0 0.24055738152168038 5.919733560513832E-4 74-75 5.044642512437875E-4 9.471573696822133E-4 0.0 0.24238992512823945 6.228589224540642E-4 76-77 5.044642512437875E-4 9.831905304853409E-4 0.0 0.24427394467880298 6.485968944562982E-4 78-79 5.096118456442343E-4 9.986333136866813E-4 0.0 0.2456277620061205 6.485968944562982E-4 80-81 5.147594400446811E-4 0.0010037809080871282 0.0 0.24625062092857455 6.588920832571918E-4 82-83 5.147594400446811E-4 0.001008928502487575 0.0 0.24667787126381163 6.897776496598727E-4 84-85 5.302022232460215E-4 0.001008928502487575 0.0 0.24678082315182057 6.897776496598727E-4 86-87 5.404974120469152E-4 0.0010192236912884686 0.0 0.24685288947342682 7.1036802726166E-4 88 5.456450064473619E-4 0.001039814068890256 0.0 0.24687862744542907 7.412535936643408E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7375 0.0 36.57569 1 GTATCAA 12165 0.0 31.105555 1 TCAACGC 13095 0.0 27.229185 4 ATCAACG 13525 0.0 26.39559 3 CAACGCA 13655 0.0 26.110884 5 AACGCAG 14425 0.0 24.714678 6 TATCAAC 15040 0.0 24.211151 2 ACGCAGA 17255 0.0 20.68467 7 GTACATG 28910 0.0 19.909006 1 CGCAGAG 18085 0.0 19.686039 8 TACATGG 29180 0.0 18.819061 2 ACATGGG 30140 0.0 17.620958 3 CATGGGG 22945 0.0 15.613167 4 GCAGAGT 22695 0.0 15.44672 9 AGAGTAC 19050 0.0 14.737455 10-11 CAGAGTA 21700 0.0 14.126175 10-11 GTGGTAT 5495 0.0 14.047327 1 TATACCG 775 0.0 12.989842 5 TATACTG 5295 0.0 12.675012 5 GAGTACA 22285 0.0 12.593806 1 >>END_MODULE