##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140243_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7789717 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.412134356100484 31.0 31.0 34.0 30.0 34.0 2 31.53028036833687 31.0 31.0 34.0 30.0 34.0 3 31.642128590807598 31.0 31.0 34.0 30.0 34.0 4 35.30366392001147 37.0 35.0 37.0 33.0 37.0 5 35.425898912630586 37.0 35.0 37.0 33.0 37.0 6 35.57740441661745 37.0 35.0 37.0 33.0 37.0 7 35.550060034273386 37.0 35.0 37.0 33.0 37.0 8 35.49458292258884 37.0 35.0 37.0 33.0 37.0 9 37.17295211109723 39.0 37.0 39.0 34.0 39.0 10-11 37.175543732846776 39.0 37.0 39.0 34.0 39.0 12-13 37.128244260991764 39.0 37.0 39.0 33.0 39.0 14-15 38.519222328616046 40.0 38.0 41.0 34.0 41.0 16-17 38.5180962928435 40.0 38.0 41.0 33.5 41.0 18-19 38.53083873265229 40.0 38.0 41.0 33.5 41.0 20-21 38.586504908220654 40.0 38.0 41.0 34.0 41.0 22-23 38.56482814192161 40.0 38.0 41.0 34.0 41.0 24-25 38.59464097099726 40.0 38.0 41.0 34.0 41.0 26-27 38.58401359363695 40.0 38.0 41.0 34.0 41.0 28-29 38.521571269605474 40.0 38.0 41.0 33.0 41.0 30-31 38.454427257072936 40.0 38.0 41.0 33.0 41.0 32-33 38.41919000263071 40.0 38.0 41.0 33.0 41.0 34-35 38.350406504909785 40.0 38.0 41.0 33.0 41.0 36-37 38.266095121257244 40.0 38.0 41.0 33.0 41.0 38-39 38.17765993579181 40.0 38.0 41.0 33.0 41.0 40-41 38.13219914310089 40.0 38.0 41.0 33.0 41.0 42-43 37.97574303148423 40.0 37.5 41.0 32.5 41.0 44-45 37.787975860976914 40.0 37.0 41.0 32.0 41.0 46-47 37.64124742745152 40.0 37.0 41.0 32.0 41.0 48-49 37.50776449060184 40.0 36.5 41.0 31.0 41.0 50-51 37.37615150302419 39.5 36.0 41.0 31.0 41.0 52-53 37.22658441437362 39.0 36.0 41.0 31.0 41.0 54-55 37.048408336836246 39.0 35.5 40.0 31.0 41.0 56-57 37.01703030163324 39.0 35.5 40.0 30.5 41.0 58-59 37.065077456840285 39.0 35.0 41.0 31.0 41.0 60-61 37.347745562091575 39.0 35.5 41.0 31.5 41.0 62-63 37.2932210230382 39.0 35.0 41.0 32.0 41.0 64-65 37.071424475560036 39.0 35.0 41.0 31.0 41.0 66-67 36.84276941362851 38.0 35.0 40.5 31.0 41.0 68-69 36.54912769957055 37.5 35.0 40.0 31.0 41.0 70-71 36.291437915292576 37.0 35.0 40.0 31.0 41.0 72-73 35.984105634124475 36.5 35.0 39.0 31.0 41.0 74-75 35.67184721710661 36.0 34.5 39.0 31.0 41.0 76-77 35.364746407177805 36.0 34.0 38.5 30.5 40.0 78-79 35.05958329064302 35.0 34.0 37.0 30.0 39.5 80-81 34.76203296067992 35.0 34.0 37.0 30.0 39.0 82-83 34.50940752036219 35.0 34.0 36.5 30.0 39.0 84-85 34.28208526829552 35.0 34.0 36.0 30.0 37.5 86-87 34.0890738390101 35.0 34.0 36.0 30.0 37.0 88-89 33.93656093003881 35.0 34.0 35.5 30.0 37.0 90-91 33.811001488912254 35.0 34.0 35.0 30.0 36.0 92-93 33.73418261136254 35.0 34.0 35.0 30.0 36.0 94-95 33.702825774748646 35.0 34.0 35.0 30.0 36.0 96-97 33.696279368087716 35.0 34.0 35.0 30.0 36.0 98-99 33.7251059856827 35.0 34.0 35.0 30.0 36.0 100 33.03802511655766 34.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 28.0 17 231.0 18 1094.0 19 3404.0 20 8669.0 21 16764.0 22 26875.0 23 38040.0 24 50355.0 25 63101.0 26 70796.0 27 73473.0 28 84942.0 29 104210.0 30 122641.0 31 147326.0 32 187925.0 33 247171.0 34 342291.0 35 495175.0 36 796217.0 37 1464772.0 38 2086034.0 39 1299635.0 40 58547.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.292719619981064 20.30053209891964 14.448162879344654 23.958585401754647 2 14.233529175451231 20.67534010882609 42.13361644226415 22.957514273458525 3 18.112221837579753 25.826795838054334 30.11641398395664 25.94456834040927 4 12.451649343997559 17.827131630756803 38.93451300480974 30.7867060204359 5 13.559462609158077 37.89955832841924 35.40133619743892 13.139642864983767 6 30.298907687912667 37.46149623966027 19.070671276011826 13.168924796415238 7 26.88674206376312 32.585987562098346 23.026745237692932 17.5005251364456 8 24.344455239531104 37.055276092899824 21.114474876090437 17.48579379147864 9 25.192282585211483 17.92808124875557 21.401921792437122 35.47771437359582 10-11 24.04927319837198 27.107133556871776 28.905467166531135 19.938126078225103 12-13 24.60961992230527 24.590151307022566 28.892028458968916 21.90820031170325 14-15 21.94768889806339 26.156764108109886 26.200084111026555 25.695462882800168 16-17 21.96525669975042 29.191348110887045 26.890905390205972 21.952489799156563 18-19 22.04267563336243 28.812750454461455 27.920426351954237 21.22414756022188 20-21 22.907456511586197 27.86717097620318 27.703923870416652 21.52144864179397 22-23 22.68586787689112 27.74322233312348 27.46803171596118 22.10287807402421 24-25 22.359545049559475 27.907356696995965 27.545426599463873 22.187671653980683 26-27 22.33328015475032 28.00963804434013 27.454821747599254 22.202260053310297 28-29 22.2788761592574 28.062030068768877 27.50032748157743 22.158766290396294 30-31 22.567102558895286 27.86934052230378 27.438984792466503 22.124572126334424 32-33 22.297530352866005 27.96483773735411 27.460263553214304 22.277368356565585 34-35 22.45662103955974 27.943284815280716 27.489607240760332 22.110486904399217 36-37 22.447983247850622 27.833720198759533 27.490832470285696 22.22746408310415 38-39 22.30899769806266 27.952131888627253 27.573279301511512 22.165591111798573 40-41 22.48829457166585 27.78608228106854 27.55532444818305 22.17029869908256 42-43 22.329499493152316 27.863004164087858 27.5136095771293 22.29388676563053 44-45 22.372468634306696 27.866522918060948 27.48135083026885 22.27965761736351 46-47 22.344795674276813 27.815835981125826 27.452463932311318 22.386904412286047 48-49 22.289477940861214 27.871787413974715 27.52811910617339 22.31061553899069 50-51 22.210864629507682 27.918616280469184 27.564673613050406 22.30584547697273 52-53 22.3731839242799 27.8725119799014 27.4564982363972 22.2978058594215 54-55 22.404604198471787 27.740339115506885 27.505416769849887 22.349639916171434 56-57 22.31910939917415 27.835992973186336 27.524300452833778 22.32059717480574 58-59 22.31790944202575 27.869632068196186 27.534091404049715 22.27836708572834 60-61 22.377668188395567 27.82019248416048 27.534824318786583 22.26731500865737 62-63 22.36134451710653 27.895597371408375 27.50395125163678 22.239106859848313 64-65 22.3543367488196 27.87964450503026 27.487192383684345 22.2788263624658 66-67 22.384520450167717 27.851183610256918 27.413602634542872 22.350693305032497 68-69 22.328597754735274 27.803560270096867 27.492137946454527 22.375704028713333 70-71 22.304347216267097 27.684168170927236 27.536135056030282 22.475349556775388 72-73 22.363223968073815 27.739518573235195 27.486530636065126 22.410726822625865 74-75 22.217117429918638 27.814005211916825 27.545504596660646 22.42337276150389 76-77 22.340312329553075 27.807394079049104 27.45718933271769 22.395104258680135 78-79 22.244826115188307 27.791061693998977 27.45285271510978 22.51125947570294 80-81 22.30265756743371 27.81153369547273 27.504154127374676 22.381654609718886 82-83 22.30079189897798 27.800029112927177 27.607721250401028 22.29145773769381 84-85 22.366670105471506 27.822011258234824 27.51755499023195 22.293763646061716 86-87 22.206309136582746 27.87352923628299 27.59767681568211 22.322484811452153 88-89 22.25881120932015 27.800002631342725 27.574623130934782 22.366563028402346 90-91 22.258693870618064 27.91629554281128 27.53752360524831 22.287486981322346 92-93 22.30417764388215 27.868771192322185 27.594215449036202 22.232835714759464 94-95 22.155885533512382 27.9691728938612 27.61221741313508 22.262724159491338 96-97 22.209617627960696 28.096788179655768 27.674458553860877 22.01913563852266 98-99 23.288209675795294 30.021573805975255 27.855526791334967 18.834689726894485 100 22.239020106196982 31.0402366768115 21.58022647801593 25.140516738975588 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3036.0 1 2248.0 2 1542.0 3 1586.5 4 1507.0 5 1508.5 6 1738.5 7 2093.5 8 2377.0 9 2714.5 10 3088.0 11 3386.5 12 3724.5 13 4179.5 14 4769.5 15 5567.0 16 6694.5 17 8066.5 18 9793.0 19 12187.5 20 15285.5 21 19436.0 22 25008.0 23 32157.0 24 41586.0 25 53205.5 26 67254.5 27 82991.5 28 99811.5 29 119558.0 30 139193.0 31 158020.0 32 177673.5 33 196124.5 34 213871.0 35 230468.0 36 246704.0 37 261620.5 38 274370.5 39 285442.5 40 295305.5 41 303826.5 42 309035.5 43 314132.5 44 319342.0 45 324237.5 46 327554.0 47 328264.0 48 326860.0 49 323410.5 50 319139.0 51 311597.5 52 299523.0 53 283905.0 54 267827.0 55 251858.5 56 234364.0 57 214781.5 58 192686.5 59 168655.0 60 143289.0 61 119138.5 62 97192.0 63 77635.0 64 61449.5 65 48591.0 66 38181.5 67 29785.0 68 23196.0 69 18205.5 70 14319.0 71 10904.5 72 8239.0 73 6213.5 74 4735.5 75 3590.0 76 2634.0 77 1921.5 78 1444.0 79 1096.0 80 829.5 81 613.5 82 472.0 83 340.0 84 245.0 85 190.5 86 151.5 87 121.5 88 83.5 89 53.5 90 39.0 91 29.0 92 21.0 93 11.0 94 4.5 95 3.0 96 2.5 97 4.0 98 3.5 99 3.5 100 23.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012323939367758803 3 0.02337697248821748 4 0.020026401472608056 5 0.011528018283591047 6 0.015302224714967179 7 0.016239357604390506 8 0.0021181770788335445 9 1.283743684141542E-4 10-11 7.06059026277848E-5 12-13 0.0032992212682437633 14-15 1.6688667893840047E-4 16-17 5.455910657601554E-4 18-19 3.209359210353855E-5 20-21 9.632224955348216E-5 22-23 1.285066575444074E-5 24-25 3.2148692589829235E-5 26-27 0.002509777352502798 28-29 0.003898054722502961 30-31 0.0027821584760071754 32-33 0.004213453148148508 34-35 0.006318808775312252 36-37 0.0012330653319115024 38-39 0.0013327449997278707 40-41 6.741075806966254E-4 42-43 5.322280376266595E-5 44-45 1.0053902321647125E-4 46-47 0.004595927102918826 48-49 9.542842626051237E-4 50-51 2.4056166612735033E-4 52-53 0.004580126753795321 54-55 2.445646040810006E-4 56-57 1.8332746685439399E-4 58-59 7.615190611423654E-4 60-61 7.90134751017047E-5 62-63 0.0 64-65 2.1944309730765262E-5 66-67 0.001972410920714769 68-69 0.0 70-71 3.6949701125932804E-4 72-73 0.001851319960657546 74-75 1.1545420762853671E-4 76-77 7.77852425682229E-6 78-79 5.505468463850819E-5 80-81 0.0031585089355570294 82-83 1.1265354376264286E-4 84-85 6.264660424081713E-4 86-87 0.013766037268851119 88-89 6.994659577412645E-4 90-91 8.602437104166657E-4 92-93 3.4188045876255E-5 94-95 1.9945482924802146E-4 96-97 6.195108024098617E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2303.0 20-21 4442.0 22-23 5133.0 24-25 6215.0 26-27 8606.0 28-29 12423.0 30-31 19858.0 32-33 24095.0 34-35 32288.0 36-37 45602.0 38-39 50777.0 40-41 49853.0 42-43 53172.0 44-45 61337.0 46-47 62760.0 48-49 61528.0 50-51 58748.0 52-53 59259.0 54-55 63737.0 56-57 65859.0 58-59 64842.0 60-61 63079.0 62-63 62134.0 64-65 66029.0 66-67 68700.0 68-69 68971.0 70-71 68453.0 72-73 66776.0 74-75 67297.0 76-77 70137.0 78-79 72619.0 80-81 71685.0 82-83 68419.0 84-85 68452.0 86-87 71142.0 88-89 74852.0 90-91 78198.0 92-93 81620.0 94-95 98551.0 96-97 259805.0 98-99 488201.0 100-101 4941760.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.13809530269239 #Duplication Level Percentage of deduplicated Percentage of total 1 90.26272508221774 77.75059215412794 2 6.91533285960456 11.913472018209157 3 1.630747830874239 4.214085362115122 4 0.5396860988289869 1.8595013045787812 5 0.2535839212014679 1.0921617985841239 6 0.13865264826837057 0.7165965018306953 7 0.07401337747387 0.4462759953762852 8 0.050561895248301694 0.3484244281266368 9 0.031647593801989365 0.24534571059149912 >10 0.1015443917938627 1.3176674344221013 >50 0.0013539071738516274 0.07834625148651404 >100 1.5039351276397274E-4 0.01753104055116821 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.283743684141542E-5 0.0 0.0 0.0 3 0.0 1.283743684141542E-5 0.0 1.283743684141542E-5 0.0 4 0.0 3.8512310524246256E-5 0.0 1.283743684141542E-5 1.283743684141542E-5 5 1.283743684141542E-5 3.8512310524246256E-5 0.0 3.8512310524246256E-5 1.283743684141542E-5 6 2.567487368283084E-5 3.8512310524246256E-5 0.0 3.8512310524246256E-5 1.283743684141542E-5 7 2.567487368283084E-5 3.8512310524246256E-5 0.0 3.8512310524246256E-5 1.283743684141542E-5 8 2.567487368283084E-5 3.8512310524246256E-5 0.0 3.8512310524246256E-5 1.283743684141542E-5 9 2.567487368283084E-5 1.283743684141542E-4 0.0 5.134974736566168E-5 1.283743684141542E-5 10-11 2.567487368283084E-5 1.283743684141542E-4 0.0 9.628077631061564E-5 1.283743684141542E-5 12-13 2.567487368283084E-5 1.283743684141542E-4 0.0 1.1553693157273878E-4 1.283743684141542E-5 14-15 3.8512310524246256E-5 2.4391129998689297E-4 0.0 1.283743684141542E-4 2.567487368283084E-5 16-17 8.986205788990794E-5 2.567487368283084E-4 0.0 1.283743684141542E-4 3.8512310524246256E-5 18-19 9.628077631061565E-5 2.824236105111392E-4 0.0 1.283743684141542E-4 5.134974736566168E-5 20-21 1.0269949473132336E-4 3.0809848419397005E-4 0.0 1.6046796051769275E-4 5.134974736566168E-5 22-23 1.0269949473132336E-4 3.3377335787680094E-4 0.0 2.3749258156618525E-4 5.776846578636939E-5 24-25 1.0269949473132336E-4 3.7870438682175486E-4 0.0 4.300541341874166E-4 6.41871842070771E-5 26-27 1.0269949473132336E-4 4.0437926050458574E-4 0.0 8.85783142057664E-4 8.344333946920022E-5 28-29 1.0269949473132336E-4 4.1079797892529344E-4 0.0 0.0036394133445412716 1.0269949473132336E-4 30-31 1.0269949473132336E-4 4.3647285260812427E-4 0.0 0.013671870236107423 1.0269949473132336E-4 32-33 1.0269949473132336E-4 4.3647285260812427E-4 0.0 0.038608591300556876 1.0269949473132336E-4 34-35 1.0269949473132336E-4 5.134974736566168E-4 0.0 0.064431095507064 1.1553693157273878E-4 36-37 1.0269949473132336E-4 6.033595315465247E-4 0.0 0.097327027413191 1.1553693157273878E-4 38-39 1.0269949473132336E-4 6.41871842070771E-4 0.0 0.12926015155621187 1.1553693157273878E-4 40-41 1.0269949473132336E-4 7.06059026277848E-4 0.0 0.15350365103122487 1.1553693157273878E-4 42-43 1.0269949473132336E-4 7.188964631192635E-4 0.0 0.177503239206251 1.1553693157273878E-4 44-45 1.0269949473132336E-4 8.151772394298792E-4 0.0 0.19404427657641476 1.1553693157273878E-4 46-47 1.0269949473132336E-4 8.986205788990794E-4 0.0 0.20684961982572667 1.1553693157273878E-4 48-49 1.0269949473132336E-4 8.986205788990794E-4 0.0 0.21634290436995338 1.5404924209698503E-4 50-51 1.0911821315203107E-4 0.0010205762288925258 0.0 0.22388489851428495 1.5404924209698503E-4 52-53 1.1553693157273878E-4 0.0010269949473132335 0.0 0.22948843969556276 1.6046796051769275E-4 54-55 1.1553693157273878E-4 0.0010719259762581876 0.0 0.23400079874532026 1.6688667893840047E-4 56-57 1.1553693157273878E-4 0.001104019568361726 0.0 0.23845538932929142 1.6688667893840047E-4 58-59 1.1553693157273878E-4 0.0011296944420445569 0.0 0.24313463505798733 1.6688667893840047E-4 60-61 1.1553693157273878E-4 0.0011553693157273879 0.0 0.24670344249990084 1.6688667893840047E-4 62-63 1.1553693157273878E-4 0.0011810441894102186 0.0 0.2501759691655037 1.6688667893840047E-4 64-65 1.1553693157273878E-4 0.0013094185578243728 0.0 0.2530387175811394 1.6688667893840047E-4 66-67 1.1553693157273878E-4 0.0013350934315072038 0.0 0.25595281574414064 1.6688667893840047E-4 68-69 1.1553693157273878E-4 0.00137360574203145 0.0 0.2588476577518798 1.6688667893840047E-4 70-71 1.1553693157273878E-4 0.001392861897293573 0.0 0.26138305152805935 1.6688667893840047E-4 72-73 1.283743684141542E-4 0.0013992806157142807 0.0 0.2634755537332101 1.7972411577981589E-4 74-75 1.283743684141542E-4 0.0014570490815006502 0.0 0.2652407012989047 1.7972411577981589E-4 76-77 1.412118052555696E-4 0.0015276549841284348 0.0 0.2670892922040685 1.7972411577981589E-4 78-79 1.5404924209698503E-4 0.001572586013073389 0.0 0.2684693166645207 1.7972411577981589E-4 80-81 1.5404924209698503E-4 0.0015854234499148043 0.0 0.26916895697237786 1.7972411577981589E-4 82-83 1.5404924209698503E-4 0.001617517042018343 0.0 0.26959901110656526 1.925615526212313E-4 84-85 1.5404924209698503E-4 0.001617517042018343 0.0 0.26972738547497943 1.925615526212313E-4 86-87 1.6046796051769275E-4 0.001636773197280466 0.0 0.26976589778550364 1.925615526212313E-4 88 1.6688667893840047E-4 0.0017844037209567433 0.0 0.26976589778550364 1.925615526212313E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6170 0.0 34.810844 1 GTATCAA 10140 0.0 31.939402 1 TCAACGC 10415 0.0 29.10577 4 ATCAACG 10750 0.0 28.160149 3 CAACGCA 11030 0.0 27.403795 5 TATCAAC 11985 0.0 25.999525 2 AACGCAG 11660 0.0 25.956236 6 ACGCAGA 13955 0.0 21.626549 7 CGCAGAG 14500 0.0 20.637062 8 GTACATG 23125 0.0 20.367579 1 TACATGG 23845 0.0 19.362494 2 ACATGGG 23865 0.0 18.708237 3 CATGGGG 17935 0.0 16.83124 4 GCAGAGT 18105 0.0 16.293816 9 GTGGTAT 4520 0.0 15.247026 1 AGAGTAC 15345 0.0 14.91421 10-11 CAGAGTA 17655 0.0 14.267477 10-11 GTATAAG 3090 0.0 13.682879 1 TGGTATC 4560 0.0 13.444329 2 ATGGGGG 10800 0.0 13.347835 5 >>END_MODULE